/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
Jun 02, 2026 9:59:50 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Tue Jun 02 21:59:50 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT 659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bQZ-T1-TRNA-1_B23MHV2LT4_1_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Tue Jun 02 21:59:50 GMT 2026] Executing as ?@nf-a7c9972e720f5bae396ec7ec2eb612d9-b3c57-4f5r9 on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
WARNING: BAM index file /tmp/nxf.XXXXmqPGbm/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXXmqPGbm/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
INFO 2026-06-02 21:59:52 CollectRnaSeqMetrics Loaded 58279 genes.
INFO 2026-06-02 22:00:07 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 14s. Last read position: chr1:1,341,966
INFO 2026-06-02 22:00:18 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 11s. Last read position: chr1:2,303,379
INFO 2026-06-02 22:00:29 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 11s. Last read position: chr1:6,595,474
INFO 2026-06-02 22:00:38 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 8s. Last read position: chr1:9,773,266
INFO 2026-06-02 22:00:49 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 11s. Last read position: chr1:11,974,754
INFO 2026-06-02 22:01:02 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 13s. Last read position: chr1:16,125,191
INFO 2026-06-02 22:01:12 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 10s. Last read position: chr1:19,115,534
INFO 2026-06-02 22:01:25 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 12s. Last read position: chr1:20,854,993
INFO 2026-06-02 22:01:43 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 17s. Last read position: chr1:21,852,713
INFO 2026-06-02 22:01:55 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 11s. Last read position: chr1:23,068,653
INFO 2026-06-02 22:02:02 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 7s. Last read position: chr1:25,805,173
INFO 2026-06-02 22:02:11 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 9s. Last read position: chr1:27,102,672
INFO 2026-06-02 22:02:20 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 8s. Last read position: chr1:29,260,673
INFO 2026-06-02 22:02:35 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 15s. Last read position: chr1:32,076,772
INFO 2026-06-02 22:02:47 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 11s. Last read position: chr1:33,092,118
INFO 2026-06-02 22:02:54 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 7s. Last read position: chr1:36,322,322
INFO 2026-06-02 22:03:36 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 41s. Last read position: chr1:39,462,006
INFO 2026-06-02 22:03:54 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 17s. Last read position: chr1:42,767,321
INFO 2026-06-02 22:04:09 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 15s. Last read position: chr1:44,650,718
INFO 2026-06-02 22:04:19 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 9s. Last read position: chr1:46,272,470
INFO 2026-06-02 22:04:32 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 12s. Last read position: chr1:53,038,920
INFO 2026-06-02 22:04:41 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 9s. Last read position: chr1:61,724,967
INFO 2026-06-02 22:04:58 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 16s. Last read position: chr1:77,964,309
INFO 2026-06-02 22:05:05 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 6s. Last read position: chr1:92,736,560
INFO 2026-06-02 22:05:19 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 14s. Last read position: chr1:103,074,721
INFO 2026-06-02 22:05:31 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 12s. Last read position: chr1:112,674,725
INFO 2026-06-02 22:05:42 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 10s. Last read position: chr1:116,388,722
INFO 2026-06-02 22:05:51 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 9s. Last read position: chr1:119,915,594
INFO 2026-06-02 22:06:00 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 8s. Last read position: chr1:120,913,422
INFO 2026-06-02 22:06:08 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 8s. Last read position: chr1:147,624,075
INFO 2026-06-02 22:06:17 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 8s. Last read position: chr1:149,813,451
INFO 2026-06-02 22:06:19 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr1:149,971,179
INFO 2026-06-02 22:06:27 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 8s. Last read position: chr1:151,055,019
INFO 2026-06-02 22:06:34 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 7s. Last read position: chr1:153,638,335
INFO 2026-06-02 22:06:46 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 11s. Last read position: chr1:154,172,972
INFO 2026-06-02 22:07:06 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 20s. Last read position: chr1:155,016,417
INFO 2026-06-02 22:07:25 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 18s. Last read position: chr1:155,192,143
INFO 2026-06-02 22:07:46 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 21s. Last read position: chr1:155,963,021
INFO 2026-06-02 22:08:11 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 25s. Last read position: chr1:156,137,671
INFO 2026-06-02 22:08:25 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 14s. Last read position: chr1:157,544,407
INFO 2026-06-02 22:08:39 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 13s. Last read position: chr1:161,194,119
INFO 2026-06-02 22:08:51 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 12s. Last read position: chr1:167,376,089
INFO 2026-06-02 22:08:58 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 7s. Last read position: chr1:171,557,408
INFO 2026-06-02 22:09:10 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 11s. Last read position: chr1:180,196,465
INFO 2026-06-02 22:09:17 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 7s. Last read position: chr1:185,307,523
INFO 2026-06-02 22:09:28 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 11s. Last read position: chr1:200,853,355
INFO 2026-06-02 22:09:36 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 7s. Last read position: chr1:202,495,291
INFO 2026-06-02 22:09:48 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 12s. Last read position: chr1:204,469,367
INFO 2026-06-02 22:09:54 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 5s. Last read position: chr1:207,321,766
INFO 2026-06-02 22:10:02 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 8s. Last read position: chr1:213,242,144
INFO 2026-06-02 22:10:10 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 7s. Last read position: chr1:224,308,122
INFO 2026-06-02 22:10:22 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 12s. Last read position: chr1:228,145,542
INFO 2026-06-02 22:10:39 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 17s. Last read position: chr1:234,356,922
INFO 2026-06-02 22:10:51 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 11s. Last read position: chr1:244,855,021
INFO 2026-06-02 22:11:07 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 16s. Last read position: chr2:3,575,593
INFO 2026-06-02 22:11:17 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 10s. Last read position: chr2:12,718,437
INFO 2026-06-02 22:11:29 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 11s. Last read position: chr2:24,820,814
INFO 2026-06-02 22:11:38 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 9s. Last read position: chr2:27,322,383
INFO 2026-06-02 22:11:47 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 8s. Last read position: chr2:32,464,706
INFO 2026-06-02 22:11:54 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 7s. Last read position: chr2:32,916,264
INFO 2026-06-02 22:12:00 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 5s. Last read position: chr2:32,916,406
INFO 2026-06-02 22:12:01 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,409
INFO 2026-06-02 22:12:08 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 7s. Last read position: chr2:42,134,259
INFO 2026-06-02 22:12:18 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 9s. Last read position: chr2:43,982,270
INFO 2026-06-02 22:12:27 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 9s. Last read position: chr2:54,599,119
INFO 2026-06-02 22:12:40 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 12s. Last read position: chr2:55,244,126
INFO 2026-06-02 22:13:04 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 24s. Last read position: chr2:65,239,905
INFO 2026-06-02 22:13:24 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 19s. Last read position: chr2:71,433,213
INFO 2026-06-02 22:13:38 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 13s. Last read position: chr2:74,462,627
INFO 2026-06-02 22:13:43 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 5s. Last read position: chr2:85,354,340
INFO 2026-06-02 22:13:50 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 6s. Last read position: chr2:88,700,039
INFO 2026-06-02 22:13:59 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 8s. Last read position: chr2:96,619,601
INFO 2026-06-02 22:14:07 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 8s. Last read position: chr2:101,033,584
INFO 2026-06-02 22:14:14 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 7s. Last read position: chr2:108,753,467
INFO 2026-06-02 22:14:19 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 4s. Last read position: chr2:109,398,757
INFO 2026-06-02 22:14:25 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 5s. Last read position: chr2:112,388,056
INFO 2026-06-02 22:14:31 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 6s. Last read position: chr2:120,222,454
INFO 2026-06-02 22:14:46 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 14s. Last read position: chr2:131,052,820
INFO 2026-06-02 22:14:57 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 10s. Last read position: chr2:152,669,172
INFO 2026-06-02 22:15:10 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 12s. Last read position: chr2:168,129,731
INFO 2026-06-02 22:15:21 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 11s. Last read position: chr2:174,720,449
INFO 2026-06-02 22:15:58 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 36s. Last read position: chr2:182,775,387
INFO 2026-06-02 22:16:05 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 7s. Last read position: chr2:188,995,690
INFO 2026-06-02 22:16:21 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 15s. Last read position: chr2:189,007,896
INFO 2026-06-02 22:16:34 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 12s. Last read position: chr2:190,905,029
INFO 2026-06-02 22:16:54 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 20s. Last read position: chr2:200,853,925
INFO 2026-06-02 22:17:13 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 18s. Last read position: chr2:207,567,466
INFO 2026-06-02 22:17:23 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 10s. Last read position: chr2:215,364,962
INFO 2026-06-02 22:17:45 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 21s. Last read position: chr2:215,372,215
INFO 2026-06-02 22:18:12 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 26s. Last read position: chr2:215,376,599
INFO 2026-06-02 22:18:47 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 34s. Last read position: chr2:215,384,102
INFO 2026-06-02 22:19:28 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 41s. Last read position: chr2:215,397,144
INFO 2026-06-02 22:20:23 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 54s. Last read position: chr2:215,407,269
INFO 2026-06-02 22:21:33 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 70s. Last read position: chr2:215,419,321
INFO 2026-06-02 22:23:01 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:23:08s. Time for last 1,000,000: 87s. Last read position: chr2:215,428,300
INFO 2026-06-02 22:24:30 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:24:37s. Time for last 1,000,000: 89s. Last read position: chr2:216,161,985
INFO 2026-06-02 22:24:43 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:24:51s. Time for last 1,000,000: 13s. Last read position: chr2:218,423,825
INFO 2026-06-02 22:24:52 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:25:00s. Time for last 1,000,000: 9s. Last read position: chr2:219,505,481
INFO 2026-06-02 22:25:04 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:25:12s. Time for last 1,000,000: 11s. Last read position: chr2:230,202,613
INFO 2026-06-02 22:25:23 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:25:31s. Time for last 1,000,000: 19s. Last read position: chr2:231,711,961
INFO 2026-06-02 22:25:35 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:25:42s. Time for last 1,000,000: 11s. Last read position: chr2:237,344,279
INFO 2026-06-02 22:26:05 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:26:12s. Time for last 1,000,000: 30s. Last read position: chr2:237,911,629
INFO 2026-06-02 22:26:21 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:26:29s. Time for last 1,000,000: 16s. Last read position: chr2:241,256,310
INFO 2026-06-02 22:26:38 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:26:46s. Time for last 1,000,000: 16s. Last read position: chr3:9,464,426
INFO 2026-06-02 22:26:53 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:27:00s. Time for last 1,000,000: 14s. Last read position: chr3:12,836,134
INFO 2026-06-02 22:27:01 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:27:09s. Time for last 1,000,000: 8s. Last read position: chr3:23,918,502
INFO 2026-06-02 22:27:14 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:27:22s. Time for last 1,000,000: 13s. Last read position: chr3:37,321,839
INFO 2026-06-02 22:27:22 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:27:29s. Time for last 1,000,000: 7s. Last read position: chr3:40,462,007
INFO 2026-06-02 22:27:42 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:27:49s. Time for last 1,000,000: 20s. Last read position: chr3:45,719,538
INFO 2026-06-02 22:27:55 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:28:02s. Time for last 1,000,000: 12s. Last read position: chr3:47,661,318
INFO 2026-06-02 22:28:10 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:28:18s. Time for last 1,000,000: 15s. Last read position: chr3:48,578,453
INFO 2026-06-02 22:28:32 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:28:40s. Time for last 1,000,000: 21s. Last read position: chr3:49,100,235
INFO 2026-06-02 22:28:47 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:28:54s. Time for last 1,000,000: 14s. Last read position: chr3:49,721,869
INFO 2026-06-02 22:28:57 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:29:05s. Time for last 1,000,000: 10s. Last read position: chr3:51,420,253
INFO 2026-06-02 22:29:07 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:29:14s. Time for last 1,000,000: 9s. Last read position: chr3:52,514,772
INFO 2026-06-02 22:29:20 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:29:28s. Time for last 1,000,000: 13s. Last read position: chr3:57,572,172
INFO 2026-06-02 22:29:39 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:29:47s. Time for last 1,000,000: 19s. Last read position: chr3:65,356,768
INFO 2026-06-02 22:29:54 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:30:02s. Time for last 1,000,000: 14s. Last read position: chr3:99,850,278
INFO 2026-06-02 22:30:09 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:30:16s. Time for last 1,000,000: 14s. Last read position: chr3:112,563,486
INFO 2026-06-02 22:30:16 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:30:24s. Time for last 1,000,000: 7s. Last read position: chr3:122,359,844
INFO 2026-06-02 22:30:25 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:30:32s. Time for last 1,000,000: 8s. Last read position: chr3:126,026,397
INFO 2026-06-02 22:30:33 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:30:41s. Time for last 1,000,000: 8s. Last read position: chr3:129,094,998
INFO 2026-06-02 22:30:46 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:30:53s. Time for last 1,000,000: 12s. Last read position: chr3:133,643,219
INFO 2026-06-02 22:30:59 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:31:07s. Time for last 1,000,000: 13s. Last read position: chr3:146,533,545
INFO 2026-06-02 22:31:08 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:31:16s. Time for last 1,000,000: 9s. Last read position: chr3:160,430,663
INFO 2026-06-02 22:31:18 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:31:26s. Time for last 1,000,000: 10s. Last read position: chr3:179,348,900
INFO 2026-06-02 22:31:35 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:31:42s. Time for last 1,000,000: 16s. Last read position: chr3:184,321,518
INFO 2026-06-02 22:32:00 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:32:07s. Time for last 1,000,000: 25s. Last read position: chr3:187,729,608
INFO 2026-06-02 22:32:11 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:32:18s. Time for last 1,000,000: 10s. Last read position: chr3:195,751,010
INFO 2026-06-02 22:32:35 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:32:43s. Time for last 1,000,000: 24s. Last read position: chr3:195,780,591
INFO 2026-06-02 22:33:06 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:33:13s. Time for last 1,000,000: 30s. Last read position: chr3:195,782,658
INFO 2026-06-02 22:33:34 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:33:42s. Time for last 1,000,000: 28s. Last read position: chr3:195,784,997
INFO 2026-06-02 22:34:09 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:34:17s. Time for last 1,000,000: 34s. Last read position: chr3:195,787,378
INFO 2026-06-02 22:34:34 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:34:41s. Time for last 1,000,000: 24s. Last read position: chr3:196,939,256
INFO 2026-06-02 22:34:52 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:35:00s. Time for last 1,000,000: 18s. Last read position: chr4:1,238,209
INFO 2026-06-02 22:35:06 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:35:13s. Time for last 1,000,000: 13s. Last read position: chr4:2,881,924
INFO 2026-06-02 22:35:20 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:35:28s. Time for last 1,000,000: 14s. Last read position: chr4:7,778,762
INFO 2026-06-02 22:35:31 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:35:39s. Time for last 1,000,000: 11s. Last read position: chr4:24,576,428
INFO 2026-06-02 22:35:41 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:35:48s. Time for last 1,000,000: 9s. Last read position: chr4:40,154,200
INFO 2026-06-02 22:35:54 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:36:01s. Time for last 1,000,000: 12s. Last read position: chr4:56,448,577
INFO 2026-06-02 22:36:02 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:36:10s. Time for last 1,000,000: 8s. Last read position: chr4:73,740,671
INFO 2026-06-02 22:36:10 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:36:18s. Time for last 1,000,000: 8s. Last read position: chr4:76,755,056
INFO 2026-06-02 22:36:28 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:36:36s. Time for last 1,000,000: 17s. Last read position: chr4:86,732,685
INFO 2026-06-02 22:36:38 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:36:46s. Time for last 1,000,000: 10s. Last read position: chr4:102,597,617
INFO 2026-06-02 22:37:05 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:37:12s. Time for last 1,000,000: 26s. Last read position: chr4:118,764,906
INFO 2026-06-02 22:37:17 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:37:24s. Time for last 1,000,000: 12s. Last read position: chr4:139,698,441
INFO 2026-06-02 22:37:34 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:37:42s. Time for last 1,000,000: 17s. Last read position: chr4:151,128,309
INFO 2026-06-02 22:37:51 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:37:58s. Time for last 1,000,000: 16s. Last read position: chr4:168,924,996
INFO 2026-06-02 22:38:00 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:38:08s. Time for last 1,000,000: 9s. Last read position: chr4:186,708,974
INFO 2026-06-02 22:38:09 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:38:16s. Time for last 1,000,000: 8s. Last read position: chr5:10,414,487
INFO 2026-06-02 22:38:34 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:38:42s. Time for last 1,000,000: 25s. Last read position: chr5:16,666,717
INFO 2026-06-02 22:38:46 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:38:54s. Time for last 1,000,000: 12s. Last read position: chr5:38,945,683
INFO 2026-06-02 22:38:56 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:39:03s. Time for last 1,000,000: 9s. Last read position: chr5:56,504,757
INFO 2026-06-02 22:39:06 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:39:14s. Time for last 1,000,000: 10s. Last read position: chr5:71,104,808
INFO 2026-06-02 22:39:17 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:39:25s. Time for last 1,000,000: 11s. Last read position: chr5:77,708,266
INFO 2026-06-02 22:39:26 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:39:34s. Time for last 1,000,000: 9s. Last read position: chr5:86,618,057
INFO 2026-06-02 22:39:47 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:39:55s. Time for last 1,000,000: 20s. Last read position: chr5:109,770,360
INFO 2026-06-02 22:39:59 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:40:06s. Time for last 1,000,000: 11s. Last read position: chr5:128,084,626
INFO 2026-06-02 22:40:09 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:40:17s. Time for last 1,000,000: 10s. Last read position: chr5:134,173,927
INFO 2026-06-02 22:40:18 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:40:25s. Time for last 1,000,000: 8s. Last read position: chr5:138,465,737
INFO 2026-06-02 22:40:30 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:40:37s. Time for last 1,000,000: 12s. Last read position: chr5:139,476,174
INFO 2026-06-02 22:40:39 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:40:46s. Time for last 1,000,000: 9s. Last read position: chr5:141,224,926
INFO 2026-06-02 22:40:45 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:40:53s. Time for last 1,000,000: 6s. Last read position: chr5:142,314,586
INFO 2026-06-02 22:40:58 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:41:06s. Time for last 1,000,000: 13s. Last read position: chr5:150,119,500
INFO 2026-06-02 22:41:08 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:41:16s. Time for last 1,000,000: 9s. Last read position: chr5:150,402,534
INFO 2026-06-02 22:41:17 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:41:24s. Time for last 1,000,000: 8s. Last read position: chr5:150,407,152
INFO 2026-06-02 22:41:26 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:41:33s. Time for last 1,000,000: 9s. Last read position: chr5:151,137,265
INFO 2026-06-02 22:41:37 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:41:45s. Time for last 1,000,000: 11s. Last read position: chr5:157,794,898
INFO 2026-06-02 22:41:48 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:41:56s. Time for last 1,000,000: 11s. Last read position: chr5:171,391,304
INFO 2026-06-02 22:42:18 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:42:25s. Time for last 1,000,000: 29s. Last read position: chr5:171,868,736
INFO 2026-06-02 22:42:24 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:42:32s. Time for last 1,000,000: 6s. Last read position: chr5:177,135,093
INFO 2026-06-02 22:42:33 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:42:40s. Time for last 1,000,000: 8s. Last read position: chr5:178,205,843
INFO 2026-06-02 22:43:08 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:43:16s. Time for last 1,000,000: 35s. Last read position: chr5:179,774,107
INFO 2026-06-02 22:43:18 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:43:26s. Time for last 1,000,000: 9s. Last read position: chr5:180,792,828
INFO 2026-06-02 22:43:31 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:43:38s. Time for last 1,000,000: 12s. Last read position: chr6:3,139,384
INFO 2026-06-02 22:43:39 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:43:47s. Time for last 1,000,000: 8s. Last read position: chr6:7,579,364
INFO 2026-06-02 22:43:47 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:43:54s. Time for last 1,000,000: 7s. Last read position: chr6:18,207,430
INFO 2026-06-02 22:43:51 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:43:58s. Time for last 1,000,000: 3s. Last read position: chr6:26,156,972
INFO 2026-06-02 22:43:54 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:44:01s. Time for last 1,000,000: 2s. Last read position: chr6:27,807,519
INFO 2026-06-02 22:43:57 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:44:05s. Time for last 1,000,000: 3s. Last read position: chr6:29,888,668
INFO 2026-06-02 22:44:02 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:44:09s. Time for last 1,000,000: 4s. Last read position: chr6:30,577,437
INFO 2026-06-02 22:44:14 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:44:22s. Time for last 1,000,000: 12s. Last read position: chr6:31,269,052
INFO 2026-06-02 22:44:20 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:44:27s. Time for last 1,000,000: 5s. Last read position: chr6:31,627,048
INFO 2026-06-02 22:44:34 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:44:42s. Time for last 1,000,000: 14s. Last read position: chr6:31,781,496
INFO 2026-06-02 22:44:36 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:44:43s. Time for last 1,000,000: 1s. Last read position: chr6:31,817,579
INFO 2026-06-02 22:44:37 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:44:45s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,671
INFO 2026-06-02 22:44:49 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:44:57s. Time for last 1,000,000: 12s. Last read position: chr6:32,089,225
INFO 2026-06-02 22:44:55 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:45:03s. Time for last 1,000,000: 6s. Last read position: chr6:32,856,148
INFO 2026-06-02 22:45:04 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:45:12s. Time for last 1,000,000: 9s. Last read position: chr6:33,313,352
INFO 2026-06-02 22:45:14 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:45:22s. Time for last 1,000,000: 9s. Last read position: chr6:34,418,402
INFO 2026-06-02 22:45:20 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:45:27s. Time for last 1,000,000: 5s. Last read position: chr6:36,975,709
INFO 2026-06-02 22:45:24 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:45:32s. Time for last 1,000,000: 4s. Last read position: chr6:42,077,207
INFO 2026-06-02 22:45:33 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:45:41s. Time for last 1,000,000: 8s. Last read position: chr6:43,516,011
INFO 2026-06-02 22:45:43 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:45:51s. Time for last 1,000,000: 9s. Last read position: chr6:44,829,752
INFO 2026-06-02 22:46:20 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:46:28s. Time for last 1,000,000: 37s. Last read position: chr6:57,325,932
INFO 2026-06-02 22:46:44 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:46:52s. Time for last 1,000,000: 23s. Last read position: chr6:75,313,114
INFO 2026-06-02 22:46:58 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:47:05s. Time for last 1,000,000: 13s. Last read position: chr6:89,342,386
INFO 2026-06-02 22:47:07 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:47:15s. Time for last 1,000,000: 9s. Last read position: chr6:108,049,352
INFO 2026-06-02 22:47:18 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:47:26s. Time for last 1,000,000: 11s. Last read position: chr6:117,548,031
INFO 2026-06-02 22:47:30 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:47:38s. Time for last 1,000,000: 11s. Last read position: chr6:131,951,164
INFO 2026-06-02 22:47:50 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:47:57s. Time for last 1,000,000: 19s. Last read position: chr6:138,307,385
INFO 2026-06-02 22:47:58 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:48:05s. Time for last 1,000,000: 7s. Last read position: chr6:149,683,744
INFO 2026-06-02 22:48:19 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:48:26s. Time for last 1,000,000: 21s. Last read position: chr6:158,489,628
INFO 2026-06-02 22:48:24 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:48:32s. Time for last 1,000,000: 5s. Last read position: chr6:159,692,814
INFO 2026-06-02 22:48:43 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:48:50s. Time for last 1,000,000: 18s. Last read position: chr6:169,223,383
INFO 2026-06-02 22:48:58 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:49:06s. Time for last 1,000,000: 15s. Last read position: chr7:1,476,049
INFO 2026-06-02 22:49:06 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:49:13s. Time for last 1,000,000: 7s. Last read position: chr7:4,996,739
INFO 2026-06-02 22:49:14 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:49:22s. Time for last 1,000,000: 8s. Last read position: chr7:5,527,862
INFO 2026-06-02 22:49:25 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:49:32s. Time for last 1,000,000: 10s. Last read position: chr7:5,529,340
INFO 2026-06-02 22:49:34 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:49:41s. Time for last 1,000,000: 8s. Last read position: chr7:11,375,818
INFO 2026-06-02 22:49:39 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:49:47s. Time for last 1,000,000: 5s. Last read position: chr7:22,511,876
INFO 2026-06-02 22:50:06 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:50:14s. Time for last 1,000,000: 26s. Last read position: chr7:30,632,038
INFO 2026-06-02 22:50:16 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:50:23s. Time for last 1,000,000: 9s. Last read position: chr7:44,104,700
INFO 2026-06-02 22:50:25 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:50:33s. Time for last 1,000,000: 9s. Last read position: chr7:45,084,220
INFO 2026-06-02 22:50:35 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:50:42s. Time for last 1,000,000: 9s. Last read position: chr7:65,388,005
INFO 2026-06-02 22:50:42 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:50:49s. Time for last 1,000,000: 7s. Last read position: chr7:73,442,310
INFO 2026-06-02 22:50:50 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:50:58s. Time for last 1,000,000: 8s. Last read position: chr7:74,711,073
INFO 2026-06-02 22:50:56 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:51:04s. Time for last 1,000,000: 5s. Last read position: chr7:76,302,860
INFO 2026-06-02 22:51:03 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:51:11s. Time for last 1,000,000: 7s. Last read position: chr7:87,978,377
INFO 2026-06-02 22:51:50 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:51:58s. Time for last 1,000,000: 46s. Last read position: chr7:94,400,199
INFO 2026-06-02 22:52:02 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:52:10s. Time for last 1,000,000: 11s. Last read position: chr7:94,416,465
INFO 2026-06-02 22:52:25 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:52:32s. Time for last 1,000,000: 22s. Last read position: chr7:96,694,850
INFO 2026-06-02 22:52:41 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:52:49s. Time for last 1,000,000: 16s. Last read position: chr7:99,672,789
INFO 2026-06-02 22:52:51 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:52:58s. Time for last 1,000,000: 9s. Last read position: chr7:100,683,301
INFO 2026-06-02 22:52:57 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:53:05s. Time for last 1,000,000: 6s. Last read position: chr7:100,958,996
INFO 2026-06-02 22:52:59 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:53:07s. Time for last 1,000,000: 2s. Last read position: chr7:100,997,883
INFO 2026-06-02 22:53:01 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:53:08s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,882
INFO 2026-06-02 22:53:09 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:53:16s. Time for last 1,000,000: 7s. Last read position: chr7:102,494,628
INFO 2026-06-02 22:53:21 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:53:28s. Time for last 1,000,000: 12s. Last read position: chr7:107,044,965
INFO 2026-06-02 22:53:44 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:53:51s. Time for last 1,000,000: 22s. Last read position: chr7:121,371,370
INFO 2026-06-02 22:53:53 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:54:00s. Time for last 1,000,000: 9s. Last read position: chr7:128,086,938
INFO 2026-06-02 22:54:02 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:54:09s. Time for last 1,000,000: 9s. Last read position: chr7:134,309,442
INFO 2026-06-02 22:54:10 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:54:18s. Time for last 1,000,000: 8s. Last read position: chr7:139,231,530
INFO 2026-06-02 22:54:20 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:54:27s. Time for last 1,000,000: 9s. Last read position: chr7:143,383,096
INFO 2026-06-02 22:54:24 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:54:32s. Time for last 1,000,000: 4s. Last read position: chr7:149,223,870
INFO 2026-06-02 22:54:32 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:54:40s. Time for last 1,000,000: 8s. Last read position: chr7:151,082,266
INFO 2026-06-02 22:54:51 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:54:59s. Time for last 1,000,000: 18s. Last read position: chr7:158,133,924
INFO 2026-06-02 22:55:01 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:55:08s. Time for last 1,000,000: 9s. Last read position: chr8:11,845,084
INFO 2026-06-02 22:55:26 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:55:34s. Time for last 1,000,000: 25s. Last read position: chr8:22,123,642
INFO 2026-06-02 22:55:36 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:55:44s. Time for last 1,000,000: 10s. Last read position: chr8:23,322,270
INFO 2026-06-02 22:55:46 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:55:53s. Time for last 1,000,000: 9s. Last read position: chr8:30,679,601
INFO 2026-06-02 22:55:53 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:56:00s. Time for last 1,000,000: 6s. Last read position: chr8:38,412,440
INFO 2026-06-02 22:56:16 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:56:24s. Time for last 1,000,000: 23s. Last read position: chr8:42,306,364
INFO 2026-06-02 22:56:29 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:56:37s. Time for last 1,000,000: 13s. Last read position: chr8:56,073,222
INFO 2026-06-02 22:56:44 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:56:51s. Time for last 1,000,000: 14s. Last read position: chr8:69,623,969
INFO 2026-06-02 22:56:52 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:57:00s. Time for last 1,000,000: 8s. Last read position: chr8:85,464,064
INFO 2026-06-02 22:57:00 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:57:08s. Time for last 1,000,000: 7s. Last read position: chr8:99,013,925
INFO 2026-06-02 22:57:38 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:57:45s. Time for last 1,000,000: 37s. Last read position: chr8:100,930,062
INFO 2026-06-02 22:57:53 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:58:00s. Time for last 1,000,000: 14s. Last read position: chr8:120,147,840
INFO 2026-06-02 22:58:01 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:58:08s. Time for last 1,000,000: 8s. Last read position: chr8:131,985,008
INFO 2026-06-02 22:58:17 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:58:24s. Time for last 1,000,000: 15s. Last read position: chr8:143,577,152
INFO 2026-06-02 22:58:29 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:58:37s. Time for last 1,000,000: 12s. Last read position: chr8:143,858,298
INFO 2026-06-02 22:58:30 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:58:38s. Time for last 1,000,000: 0s. Last read position: chr8:143,860,341
INFO 2026-06-02 22:58:31 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:58:38s. Time for last 1,000,000: 0s. Last read position: chr8:143,862,192
INFO 2026-06-02 22:58:32 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:58:40s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,331
INFO 2026-06-02 22:58:33 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:58:40s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,303
INFO 2026-06-02 22:58:36 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:58:44s. Time for last 1,000,000: 3s. Last read position: chr8:143,919,260
INFO 2026-06-02 22:58:45 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:58:52s. Time for last 1,000,000: 8s. Last read position: chr8:143,929,790
INFO 2026-06-02 22:59:06 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:59:14s. Time for last 1,000,000: 21s. Last read position: chr8:144,309,772
INFO 2026-06-02 22:59:15 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:59:23s. Time for last 1,000,000: 9s. Last read position: chr8:144,791,992
INFO 2026-06-02 22:59:30 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:59:38s. Time for last 1,000,000: 14s. Last read position: chr9:14,307,087
INFO 2026-06-02 22:59:39 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:59:47s. Time for last 1,000,000: 8s. Last read position: chr9:33,071,812
INFO 2026-06-02 22:59:49 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:59:57s. Time for last 1,000,000: 10s. Last read position: chr9:35,091,650
INFO 2026-06-02 23:00:00 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 01:00:08s. Time for last 1,000,000: 11s. Last read position: chr9:35,829,796
INFO 2026-06-02 23:00:11 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 01:00:19s. Time for last 1,000,000: 10s. Last read position: chr9:70,278,548
INFO 2026-06-02 23:00:24 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 01:00:31s. Time for last 1,000,000: 12s. Last read position: chr9:83,972,094
INFO 2026-06-02 23:00:35 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 01:00:43s. Time for last 1,000,000: 11s. Last read position: chr9:93,107,808
INFO 2026-06-02 23:00:44 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 01:00:51s. Time for last 1,000,000: 8s. Last read position: chr9:98,080,996
INFO 2026-06-02 23:00:50 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 01:00:57s. Time for last 1,000,000: 5s. Last read position: chr9:101,554,761
INFO 2026-06-02 23:01:05 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 01:01:12s. Time for last 1,000,000: 15s. Last read position: chr9:111,647,222
INFO 2026-06-02 23:01:14 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 01:01:22s. Time for last 1,000,000: 9s. Last read position: chr9:114,788,681
INFO 2026-06-02 23:01:30 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 01:01:38s. Time for last 1,000,000: 16s. Last read position: chr9:122,322,543
INFO 2026-06-02 23:01:40 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 01:01:47s. Time for last 1,000,000: 9s. Last read position: chr9:127,447,934
INFO 2026-06-02 23:01:49 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 01:01:57s. Time for last 1,000,000: 9s. Last read position: chr9:128,152,279
INFO 2026-06-02 23:02:14 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 01:02:22s. Time for last 1,000,000: 24s. Last read position: chr9:128,691,908
INFO 2026-06-02 23:02:23 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 01:02:30s. Time for last 1,000,000: 8s. Last read position: chr9:130,494,936
INFO 2026-06-02 23:02:32 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 01:02:39s. Time for last 1,000,000: 9s. Last read position: chr9:132,300,782
INFO 2026-06-02 23:02:40 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 01:02:47s. Time for last 1,000,000: 8s. Last read position: chr9:134,642,125
INFO 2026-06-02 23:02:53 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 01:03:01s. Time for last 1,000,000: 13s. Last read position: chr9:136,050,168
INFO 2026-06-02 23:03:10 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 01:03:17s. Time for last 1,000,000: 16s. Last read position: chr9:136,506,780
INFO 2026-06-02 23:03:27 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 01:03:34s. Time for last 1,000,000: 16s. Last read position: chr9:137,040,881
INFO 2026-06-02 23:03:32 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 01:03:40s. Time for last 1,000,000: 5s. Last read position: chr9:137,552,101
INFO 2026-06-02 23:03:46 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 01:03:54s. Time for last 1,000,000: 14s. Last read position: chr10:5,813,227
INFO 2026-06-02 23:03:55 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 01:04:03s. Time for last 1,000,000: 9s. Last read position: chr10:17,235,272
INFO 2026-06-02 23:04:11 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 01:04:18s. Time for last 1,000,000: 15s. Last read position: chr10:30,027,565
INFO 2026-06-02 23:04:21 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 01:04:29s. Time for last 1,000,000: 10s. Last read position: chr10:32,929,924
INFO 2026-06-02 23:04:32 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 01:04:40s. Time for last 1,000,000: 10s. Last read position: chr10:46,012,936
INFO 2026-06-02 23:04:39 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 01:04:46s. Time for last 1,000,000: 6s. Last read position: chr10:60,138,964
INFO 2026-06-02 23:04:49 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 01:04:57s. Time for last 1,000,000: 10s. Last read position: chr10:70,404,379
INFO 2026-06-02 23:04:58 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 01:05:05s. Time for last 1,000,000: 8s. Last read position: chr10:73,797,950
INFO 2026-06-02 23:05:22 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 01:05:29s. Time for last 1,000,000: 24s. Last read position: chr10:78,037,199
INFO 2026-06-02 23:05:29 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 01:05:37s. Time for last 1,000,000: 7s. Last read position: chr10:84,214,491
INFO 2026-06-02 23:05:34 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 01:05:42s. Time for last 1,000,000: 5s. Last read position: chr10:91,828,301
INFO 2026-06-02 23:05:49 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 01:05:57s. Time for last 1,000,000: 15s. Last read position: chr10:95,627,484
INFO 2026-06-02 23:06:01 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 01:06:08s. Time for last 1,000,000: 11s. Last read position: chr10:97,461,577
INFO 2026-06-02 23:06:10 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 01:06:17s. Time for last 1,000,000: 9s. Last read position: chr10:100,986,755
INFO 2026-06-02 23:06:27 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 01:06:35s. Time for last 1,000,000: 17s. Last read position: chr10:102,376,338
INFO 2026-06-02 23:06:49 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 01:06:56s. Time for last 1,000,000: 21s. Last read position: chr10:103,897,559
INFO 2026-06-02 23:06:58 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 01:07:05s. Time for last 1,000,000: 9s. Last read position: chr10:119,042,680
INFO 2026-06-02 23:07:12 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 01:07:20s. Time for last 1,000,000: 14s. Last read position: chr10:122,579,713
INFO 2026-06-02 23:07:42 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 01:07:50s. Time for last 1,000,000: 29s. Last read position: chr10:122,598,918
INFO 2026-06-02 23:08:03 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 01:08:11s. Time for last 1,000,000: 21s. Last read position: chr10:122,617,235
INFO 2026-06-02 23:09:02 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 01:09:09s. Time for last 1,000,000: 58s. Last read position: chr10:126,055,153
INFO 2026-06-02 23:09:08 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 01:09:16s. Time for last 1,000,000: 6s. Last read position: chr10:133,352,005
INFO 2026-06-02 23:09:16 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 01:09:24s. Time for last 1,000,000: 8s. Last read position: chr11:403,173
INFO 2026-06-02 23:09:27 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 01:09:34s. Time for last 1,000,000: 10s. Last read position: chr11:821,957
INFO 2026-06-02 23:09:33 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 01:09:41s. Time for last 1,000,000: 6s. Last read position: chr11:1,016,122
INFO 2026-06-02 23:09:35 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 01:09:43s. Time for last 1,000,000: 2s. Last read position: chr11:1,016,725
INFO 2026-06-02 23:09:37 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 01:09:45s. Time for last 1,000,000: 1s. Last read position: chr11:1,017,092
INFO 2026-06-02 23:09:39 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 01:09:47s. Time for last 1,000,000: 1s. Last read position: chr11:1,017,520
INFO 2026-06-02 23:09:41 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:09:48s. Time for last 1,000,000: 1s. Last read position: chr11:1,018,040
INFO 2026-06-02 23:09:43 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:09:51s. Time for last 1,000,000: 2s. Last read position: chr11:1,020,197
INFO 2026-06-02 23:09:48 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:09:56s. Time for last 1,000,000: 5s. Last read position: chr11:1,031,933
INFO 2026-06-02 23:09:52 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:10:00s. Time for last 1,000,000: 4s. Last read position: chr11:1,078,360
INFO 2026-06-02 23:09:58 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:10:05s. Time for last 1,000,000: 5s. Last read position: chr11:1,083,755
INFO 2026-06-02 23:10:05 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:10:13s. Time for last 1,000,000: 7s. Last read position: chr11:1,088,010
INFO 2026-06-02 23:10:16 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:10:24s. Time for last 1,000,000: 10s. Last read position: chr11:1,094,209
INFO 2026-06-02 23:10:22 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:10:30s. Time for last 1,000,000: 6s. Last read position: chr11:1,230,524
INFO 2026-06-02 23:10:31 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:10:38s. Time for last 1,000,000: 8s. Last read position: chr11:1,243,227
INFO 2026-06-02 23:10:37 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:10:44s. Time for last 1,000,000: 5s. Last read position: chr11:1,245,038
INFO 2026-06-02 23:10:42 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:10:50s. Time for last 1,000,000: 5s. Last read position: chr11:1,247,786
INFO 2026-06-02 23:10:50 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:10:57s. Time for last 1,000,000: 7s. Last read position: chr11:1,249,669
INFO 2026-06-02 23:11:00 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:11:07s. Time for last 1,000,000: 9s. Last read position: chr11:1,256,211
INFO 2026-06-02 23:11:11 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:11:19s. Time for last 1,000,000: 11s. Last read position: chr11:2,846,928
INFO 2026-06-02 23:11:22 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:11:29s. Time for last 1,000,000: 10s. Last read position: chr11:6,481,504
INFO 2026-06-02 23:11:37 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:11:45s. Time for last 1,000,000: 15s. Last read position: chr11:9,420,435
INFO 2026-06-02 23:11:51 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:11:58s. Time for last 1,000,000: 13s. Last read position: chr11:14,468,786
INFO 2026-06-02 23:12:02 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:12:10s. Time for last 1,000,000: 11s. Last read position: chr11:20,397,577
INFO 2026-06-02 23:12:13 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:12:20s. Time for last 1,000,000: 10s. Last read position: chr11:35,663,633
INFO 2026-06-02 23:12:19 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:12:26s. Time for last 1,000,000: 6s. Last read position: chr11:46,310,058
INFO 2026-06-02 23:12:30 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:12:37s. Time for last 1,000,000: 11s. Last read position: chr11:47,235,312
INFO 2026-06-02 23:12:40 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:12:47s. Time for last 1,000,000: 9s. Last read position: chr11:57,600,040
INFO 2026-06-02 23:12:55 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:13:03s. Time for last 1,000,000: 15s. Last read position: chr11:60,935,941
INFO 2026-06-02 23:13:07 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:13:15s. Time for last 1,000,000: 11s. Last read position: chr11:61,771,654
INFO 2026-06-02 23:13:15 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:13:22s. Time for last 1,000,000: 7s. Last read position: chr11:62,526,844
INFO 2026-06-02 23:13:21 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:13:28s. Time for last 1,000,000: 5s. Last read position: chr11:62,633,013
INFO 2026-06-02 23:13:35 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:13:43s. Time for last 1,000,000: 14s. Last read position: chr11:63,976,234
INFO 2026-06-02 23:13:42 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:13:50s. Time for last 1,000,000: 7s. Last read position: chr11:64,601,332
INFO 2026-06-02 23:13:52 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:13:59s. Time for last 1,000,000: 9s. Last read position: chr11:65,130,258
INFO 2026-06-02 23:14:03 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:14:10s. Time for last 1,000,000: 11s. Last read position: chr11:65,627,511
INFO 2026-06-02 23:14:13 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:14:21s. Time for last 1,000,000: 10s. Last read position: chr11:66,060,669
INFO 2026-06-02 23:14:24 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:14:32s. Time for last 1,000,000: 11s. Last read position: chr11:67,250,585
INFO 2026-06-02 23:14:33 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:14:41s. Time for last 1,000,000: 9s. Last read position: chr11:68,018,785
INFO 2026-06-02 23:14:43 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:14:50s. Time for last 1,000,000: 9s. Last read position: chr11:69,641,344
INFO 2026-06-02 23:14:58 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:15:05s. Time for last 1,000,000: 15s. Last read position: chr11:72,098,370
INFO 2026-06-02 23:15:18 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:15:26s. Time for last 1,000,000: 20s. Last read position: chr11:74,949,289
INFO 2026-06-02 23:15:28 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:15:35s. Time for last 1,000,000: 9s. Last read position: chr11:77,122,590
INFO 2026-06-02 23:15:43 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:15:51s. Time for last 1,000,000: 15s. Last read position: chr11:93,794,919
INFO 2026-06-02 23:15:56 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:16:03s. Time for last 1,000,000: 12s. Last read position: chr11:108,486,258
INFO 2026-06-02 23:16:05 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:16:12s. Time for last 1,000,000: 9s. Last read position: chr11:117,986,418
INFO 2026-06-02 23:16:15 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:16:22s. Time for last 1,000,000: 10s. Last read position: chr11:119,045,588
INFO 2026-06-02 23:16:28 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:16:36s. Time for last 1,000,000: 13s. Last read position: chr11:123,057,709
INFO 2026-06-02 23:16:40 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:16:47s. Time for last 1,000,000: 11s. Last read position: chr11:126,402,976
INFO 2026-06-02 23:16:49 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:16:57s. Time for last 1,000,000: 9s. Last read position: chr11:130,907,992
INFO 2026-06-02 23:17:05 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:17:13s. Time for last 1,000,000: 16s. Last read position: chr12:3,678,971
INFO 2026-06-02 23:17:15 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:17:23s. Time for last 1,000,000: 10s. Last read position: chr12:6,517,470
INFO 2026-06-02 23:17:46 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:17:53s. Time for last 1,000,000: 30s. Last read position: chr12:6,936,306
INFO 2026-06-02 23:17:55 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:18:02s. Time for last 1,000,000: 8s. Last read position: chr12:8,946,251
INFO 2026-06-02 23:18:00 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:18:08s. Time for last 1,000,000: 5s. Last read position: chr12:12,909,060
INFO 2026-06-02 23:18:09 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:18:17s. Time for last 1,000,000: 8s. Last read position: chr12:26,631,977
INFO 2026-06-02 23:18:22 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:18:30s. Time for last 1,000,000: 12s. Last read position: chr12:45,348,524
INFO 2026-06-02 23:18:36 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:18:44s. Time for last 1,000,000: 13s. Last read position: chr12:49,022,123
INFO 2026-06-02 23:18:43 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:18:50s. Time for last 1,000,000: 6s. Last read position: chr12:49,128,860
INFO 2026-06-02 23:18:51 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:18:59s. Time for last 1,000,000: 8s. Last read position: chr12:50,200,837
INFO 2026-06-02 23:19:01 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:19:09s. Time for last 1,000,000: 9s. Last read position: chr12:52,056,048
INFO 2026-06-02 23:19:12 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:19:19s. Time for last 1,000,000: 10s. Last read position: chr12:52,949,561
INFO 2026-06-02 23:19:23 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:19:31s. Time for last 1,000,000: 11s. Last read position: chr12:53,443,501
INFO 2026-06-02 23:19:43 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:19:51s. Time for last 1,000,000: 19s. Last read position: chr12:54,283,832
INFO 2026-06-02 23:19:59 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:20:06s. Time for last 1,000,000: 15s. Last read position: chr12:56,101,278
INFO 2026-06-02 23:20:12 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:20:20s. Time for last 1,000,000: 13s. Last read position: chr12:56,600,306
INFO 2026-06-02 23:20:25 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:20:33s. Time for last 1,000,000: 12s. Last read position: chr12:57,096,548
INFO 2026-06-02 23:20:42 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:20:50s. Time for last 1,000,000: 17s. Last read position: chr12:57,198,660
INFO 2026-06-02 23:21:01 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:21:09s. Time for last 1,000,000: 18s. Last read position: chr12:57,720,814
INFO 2026-06-02 23:21:11 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:21:18s. Time for last 1,000,000: 9s. Last read position: chr12:68,839,397
INFO 2026-06-02 23:21:22 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:21:29s. Time for last 1,000,000: 10s. Last read position: chr12:76,392,611
INFO 2026-06-02 23:21:32 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:21:39s. Time for last 1,000,000: 9s. Last read position: chr12:95,141,444
INFO 2026-06-02 23:21:42 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:21:49s. Time for last 1,000,000: 9s. Last read position: chr12:102,402,440
INFO 2026-06-02 23:22:14 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:22:21s. Time for last 1,000,000: 31s. Last read position: chr12:105,199,510
INFO 2026-06-02 23:22:22 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:22:29s. Time for last 1,000,000: 8s. Last read position: chr12:109,996,173
INFO 2026-06-02 23:22:35 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:22:43s. Time for last 1,000,000: 13s. Last read position: chr12:112,022,163
INFO 2026-06-02 23:22:51 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:22:58s. Time for last 1,000,000: 15s. Last read position: chr12:113,177,056
INFO 2026-06-02 23:23:06 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:23:13s. Time for last 1,000,000: 14s. Last read position: chr12:119,783,909
INFO 2026-06-02 23:23:18 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:23:26s. Time for last 1,000,000: 12s. Last read position: chr12:120,438,221
INFO 2026-06-02 23:23:27 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:23:35s. Time for last 1,000,000: 9s. Last read position: chr12:121,822,962
INFO 2026-06-02 23:23:38 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:23:46s. Time for last 1,000,000: 10s. Last read position: chr12:122,997,486
INFO 2026-06-02 23:23:51 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:23:58s. Time for last 1,000,000: 12s. Last read position: chr12:124,363,770
INFO 2026-06-02 23:24:05 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:24:12s. Time for last 1,000,000: 13s. Last read position: chr12:131,961,194
INFO 2026-06-02 23:24:15 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:24:22s. Time for last 1,000,000: 9s. Last read position: chr12:132,798,346
INFO 2026-06-02 23:24:23 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:24:30s. Time for last 1,000,000: 8s. Last read position: chr13:24,434,860
INFO 2026-06-02 23:24:30 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:24:37s. Time for last 1,000,000: 6s. Last read position: chr13:32,407,722
INFO 2026-06-02 23:24:40 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:24:47s. Time for last 1,000,000: 9s. Last read position: chr13:44,436,524
INFO 2026-06-02 23:24:50 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:24:57s. Time for last 1,000,000: 10s. Last read position: chr13:52,024,562
INFO 2026-06-02 23:25:02 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:25:09s. Time for last 1,000,000: 11s. Last read position: chr13:79,481,434
INFO 2026-06-02 23:25:16 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:25:23s. Time for last 1,000,000: 13s. Last read position: chr13:106,567,795
INFO 2026-06-02 23:25:30 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:25:37s. Time for last 1,000,000: 13s. Last read position: chr13:110,430,400
INFO 2026-06-02 23:25:43 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:25:51s. Time for last 1,000,000: 13s. Last read position: chr13:113,355,436
INFO 2026-06-02 23:25:56 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:26:04s. Time for last 1,000,000: 12s. Last read position: chr14:21,233,986
INFO 2026-06-02 23:26:07 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:26:15s. Time for last 1,000,000: 10s. Last read position: chr14:23,034,696
INFO 2026-06-02 23:26:19 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:26:26s. Time for last 1,000,000: 11s. Last read position: chr14:24,184,306
INFO 2026-06-02 23:26:37 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:26:44s. Time for last 1,000,000: 18s. Last read position: chr14:32,154,832
INFO 2026-06-02 23:26:46 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:26:54s. Time for last 1,000,000: 9s. Last read position: chr14:49,618,992
INFO 2026-06-02 23:26:54 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:27:02s. Time for last 1,000,000: 7s. Last read position: chr14:55,142,713
INFO 2026-06-02 23:27:19 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:27:27s. Time for last 1,000,000: 24s. Last read position: chr14:64,168,914
INFO 2026-06-02 23:27:38 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:27:45s. Time for last 1,000,000: 18s. Last read position: chr14:68,874,843
INFO 2026-06-02 23:27:51 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:27:59s. Time for last 1,000,000: 13s. Last read position: chr14:73,522,867
INFO 2026-06-02 23:28:00 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:28:08s. Time for last 1,000,000: 8s. Last read position: chr14:75,280,118
INFO 2026-06-02 23:28:08 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:28:16s. Time for last 1,000,000: 8s. Last read position: chr14:90,401,346
INFO 2026-06-02 23:28:17 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:28:25s. Time for last 1,000,000: 9s. Last read position: chr14:94,566,989
INFO 2026-06-02 23:28:41 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:28:48s. Time for last 1,000,000: 23s. Last read position: chr14:102,001,241
INFO 2026-06-02 23:30:22 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:30:29s. Time for last 1,000,000: 101s. Last read position: chr14:102,983,612
INFO 2026-06-02 23:30:52 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:30:59s. Time for last 1,000,000: 30s. Last read position: chr14:104,883,484
INFO 2026-06-02 23:31:00 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:31:07s. Time for last 1,000,000: 8s. Last read position: chr14:105,587,231
INFO 2026-06-02 23:31:01 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:31:09s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,384
INFO 2026-06-02 23:31:03 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:31:10s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,892
INFO 2026-06-02 23:31:04 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:31:12s. Time for last 1,000,000: 1s. Last read position: chr14:105,926,692
INFO 2026-06-02 23:31:33 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 01:31:41s. Time for last 1,000,000: 28s. Last read position: chr15:30,372,977
INFO 2026-06-02 23:31:40 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 01:31:47s. Time for last 1,000,000: 6s. Last read position: chr15:34,531,323
INFO 2026-06-02 23:31:46 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 01:31:53s. Time for last 1,000,000: 6s. Last read position: chr15:40,383,030
INFO 2026-06-02 23:31:55 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 01:32:03s. Time for last 1,000,000: 9s. Last read position: chr15:42,211,706
INFO 2026-06-02 23:32:05 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 01:32:12s. Time for last 1,000,000: 9s. Last read position: chr15:43,768,558
INFO 2026-06-02 23:32:14 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 01:32:21s. Time for last 1,000,000: 8s. Last read position: chr15:45,431,044
INFO 2026-06-02 23:32:27 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 01:32:35s. Time for last 1,000,000: 13s. Last read position: chr15:52,557,100
INFO 2026-06-02 23:32:39 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 01:32:47s. Time for last 1,000,000: 11s. Last read position: chr15:60,349,111
INFO 2026-06-02 23:33:05 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 01:33:12s. Time for last 1,000,000: 25s. Last read position: chr15:63,649,780
INFO 2026-06-02 23:33:13 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 01:33:20s. Time for last 1,000,000: 7s. Last read position: chr15:66,500,069
INFO 2026-06-02 23:33:23 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 01:33:30s. Time for last 1,000,000: 10s. Last read position: chr15:72,199,675
INFO 2026-06-02 23:33:35 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 01:33:42s. Time for last 1,000,000: 12s. Last read position: chr15:74,035,252
INFO 2026-06-02 23:33:46 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 01:33:54s. Time for last 1,000,000: 11s. Last read position: chr15:75,687,636
INFO 2026-06-02 23:33:58 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 01:34:06s. Time for last 1,000,000: 11s. Last read position: chr15:81,323,666
INFO 2026-06-02 23:34:06 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 01:34:14s. Time for last 1,000,000: 8s. Last read position: chr15:88,856,383
INFO 2026-06-02 23:34:18 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 01:34:25s. Time for last 1,000,000: 11s. Last read position: chr15:90,265,749
INFO 2026-06-02 23:34:29 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 01:34:37s. Time for last 1,000,000: 11s. Last read position: chr15:99,712,578
INFO 2026-06-02 23:34:37 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 01:34:45s. Time for last 1,000,000: 7s. Last read position: chr16:552,366
INFO 2026-06-02 23:34:53 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 01:35:01s. Time for last 1,000,000: 16s. Last read position: chr16:1,446,630
INFO 2026-06-02 23:35:05 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 01:35:12s. Time for last 1,000,000: 11s. Last read position: chr16:2,061,856
INFO 2026-06-02 23:35:42 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 01:35:49s. Time for last 1,000,000: 37s. Last read position: chr16:2,514,143
INFO 2026-06-02 23:35:55 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 01:36:02s. Time for last 1,000,000: 13s. Last read position: chr16:2,767,258
INFO 2026-06-02 23:36:08 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 01:36:15s. Time for last 1,000,000: 12s. Last read position: chr16:3,289,504
INFO 2026-06-02 23:36:20 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 01:36:28s. Time for last 1,000,000: 12s. Last read position: chr16:4,875,234
INFO 2026-06-02 23:36:30 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 01:36:38s. Time for last 1,000,000: 9s. Last read position: chr16:14,251,898
INFO 2026-06-02 23:36:40 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 01:36:47s. Time for last 1,000,000: 9s. Last read position: chr16:15,070,077
INFO 2026-06-02 23:36:54 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 01:37:02s. Time for last 1,000,000: 14s. Last read position: chr16:16,320,038
INFO 2026-06-02 23:36:56 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 01:37:04s. Time for last 1,000,000: 2s. Last read position: chr16:18,350,640
INFO 2026-06-02 23:37:02 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 01:37:10s. Time for last 1,000,000: 6s. Last read position: chr16:18,834,230
INFO 2026-06-02 23:37:11 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 01:37:18s. Time for last 1,000,000: 8s. Last read position: chr16:21,404,237
INFO 2026-06-02 23:37:14 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 01:37:22s. Time for last 1,000,000: 3s. Last read position: chr16:21,837,680
INFO 2026-06-02 23:37:19 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 01:37:27s. Time for last 1,000,000: 4s. Last read position: chr16:22,534,582
INFO 2026-06-02 23:37:26 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 01:37:34s. Time for last 1,000,000: 7s. Last read position: chr16:27,362,643
INFO 2026-06-02 23:37:38 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 01:37:46s. Time for last 1,000,000: 12s. Last read position: chr16:28,732,049
INFO 2026-06-02 23:37:49 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 01:37:57s. Time for last 1,000,000: 11s. Last read position: chr16:29,444,434
INFO 2026-06-02 23:37:53 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 01:38:01s. Time for last 1,000,000: 3s. Last read position: chr16:29,817,237
INFO 2026-06-02 23:38:06 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 01:38:14s. Time for last 1,000,000: 13s. Last read position: chr16:30,116,650
INFO 2026-06-02 23:38:10 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 01:38:18s. Time for last 1,000,000: 3s. Last read position: chr16:30,604,789
INFO 2026-06-02 23:38:18 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 01:38:26s. Time for last 1,000,000: 7s. Last read position: chr16:31,090,775
INFO 2026-06-02 23:38:27 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 01:38:35s. Time for last 1,000,000: 9s. Last read position: chr16:31,496,949
INFO 2026-06-02 23:38:36 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 01:38:44s. Time for last 1,000,000: 9s. Last read position: chr16:55,485,332
INFO 2026-06-02 23:38:51 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 01:38:58s. Time for last 1,000,000: 14s. Last read position: chr16:57,562,405
INFO 2026-06-02 23:39:07 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 01:39:15s. Time for last 1,000,000: 16s. Last read position: chr16:66,943,221
INFO 2026-06-02 23:39:18 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 01:39:26s. Time for last 1,000,000: 10s. Last read position: chr16:67,942,704
INFO 2026-06-02 23:39:28 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 01:39:36s. Time for last 1,000,000: 10s. Last read position: chr16:69,937,147
INFO 2026-06-02 23:39:43 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 01:39:51s. Time for last 1,000,000: 14s. Last read position: chr16:72,788,484
INFO 2026-06-02 23:39:51 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 01:39:59s. Time for last 1,000,000: 8s. Last read position: chr16:79,598,785
INFO 2026-06-02 23:40:01 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 01:40:08s. Time for last 1,000,000: 9s. Last read position: chr16:85,805,733
INFO 2026-06-02 23:40:06 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 01:40:14s. Time for last 1,000,000: 5s. Last read position: chr16:88,716,193
INFO 2026-06-02 23:40:22 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 01:40:30s. Time for last 1,000,000: 15s. Last read position: chr16:89,561,708
INFO 2026-06-02 23:40:42 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 01:40:49s. Time for last 1,000,000: 19s. Last read position: chr17:1,345,385
INFO 2026-06-02 23:40:53 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 01:41:01s. Time for last 1,000,000: 11s. Last read position: chr17:1,733,879
INFO 2026-06-02 23:41:04 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 01:41:12s. Time for last 1,000,000: 10s. Last read position: chr17:4,006,918
INFO 2026-06-02 23:41:17 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 01:41:24s. Time for last 1,000,000: 12s. Last read position: chr17:4,945,856
INFO 2026-06-02 23:41:25 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 01:41:33s. Time for last 1,000,000: 8s. Last read position: chr17:7,222,182
INFO 2026-06-02 23:41:36 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 01:41:44s. Time for last 1,000,000: 10s. Last read position: chr17:7,496,275
INFO 2026-06-02 23:41:49 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 01:41:57s. Time for last 1,000,000: 12s. Last read position: chr17:7,845,566
INFO 2026-06-02 23:42:01 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 01:42:08s. Time for last 1,000,000: 11s. Last read position: chr17:8,382,179
INFO 2026-06-02 23:42:15 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 01:42:23s. Time for last 1,000,000: 14s. Last read position: chr17:16,382,190
INFO 2026-06-02 23:42:26 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 01:42:33s. Time for last 1,000,000: 10s. Last read position: chr17:18,245,062
INFO 2026-06-02 23:42:39 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 01:42:46s. Time for last 1,000,000: 13s. Last read position: chr17:27,592,594
INFO 2026-06-02 23:42:50 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 01:42:57s. Time for last 1,000,000: 11s. Last read position: chr17:28,749,028
INFO 2026-06-02 23:43:04 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 01:43:11s. Time for last 1,000,000: 13s. Last read position: chr17:31,305,382
INFO 2026-06-02 23:43:17 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 01:43:25s. Time for last 1,000,000: 13s. Last read position: chr17:35,844,950
INFO 2026-06-02 23:43:26 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 01:43:34s. Time for last 1,000,000: 9s. Last read position: chr17:38,256,896
INFO 2026-06-02 23:43:33 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 01:43:40s. Time for last 1,000,000: 6s. Last read position: chr17:39,462,261
INFO 2026-06-02 23:43:54 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 01:44:02s. Time for last 1,000,000: 21s. Last read position: chr17:39,917,214
INFO 2026-06-02 23:44:02 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 01:44:10s. Time for last 1,000,000: 8s. Last read position: chr17:41,524,845
INFO 2026-06-02 23:44:11 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 01:44:19s. Time for last 1,000,000: 9s. Last read position: chr17:42,121,113
INFO 2026-06-02 23:44:28 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 01:44:36s. Time for last 1,000,000: 17s. Last read position: chr17:42,998,807
INFO 2026-06-02 23:44:42 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 01:44:49s. Time for last 1,000,000: 13s. Last read position: chr17:44,352,461
INFO 2026-06-02 23:44:52 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 01:45:00s. Time for last 1,000,000: 10s. Last read position: chr17:46,425,568
INFO 2026-06-02 23:45:05 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 01:45:12s. Time for last 1,000,000: 12s. Last read position: chr17:48,550,743
INFO 2026-06-02 23:45:12 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 01:45:20s. Time for last 1,000,000: 7s. Last read position: chr17:50,185,551
INFO 2026-06-02 23:45:17 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 01:45:24s. Time for last 1,000,000: 4s. Last read position: chr17:50,186,490
INFO 2026-06-02 23:45:22 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 01:45:29s. Time for last 1,000,000: 4s. Last read position: chr17:50,187,014
INFO 2026-06-02 23:45:27 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 01:45:35s. Time for last 1,000,000: 5s. Last read position: chr17:50,187,527
INFO 2026-06-02 23:45:33 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 01:45:40s. Time for last 1,000,000: 5s. Last read position: chr17:50,188,095
INFO 2026-06-02 23:45:39 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 01:45:47s. Time for last 1,000,000: 6s. Last read position: chr17:50,188,623
INFO 2026-06-02 23:45:45 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 01:45:53s. Time for last 1,000,000: 6s. Last read position: chr17:50,188,980
INFO 2026-06-02 23:45:51 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 01:45:59s. Time for last 1,000,000: 6s. Last read position: chr17:50,189,430
INFO 2026-06-02 23:45:58 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 01:46:06s. Time for last 1,000,000: 6s. Last read position: chr17:50,189,689
INFO 2026-06-02 23:46:05 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 01:46:13s. Time for last 1,000,000: 6s. Last read position: chr17:50,190,041
INFO 2026-06-02 23:46:13 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 01:46:20s. Time for last 1,000,000: 7s. Last read position: chr17:50,190,554
INFO 2026-06-02 23:46:21 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 01:46:28s. Time for last 1,000,000: 7s. Last read position: chr17:50,191,469
INFO 2026-06-02 23:46:29 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 01:46:37s. Time for last 1,000,000: 8s. Last read position: chr17:50,192,494
INFO 2026-06-02 23:46:39 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 01:46:47s. Time for last 1,000,000: 9s. Last read position: chr17:50,192,835
INFO 2026-06-02 23:46:49 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 01:46:57s. Time for last 1,000,000: 10s. Last read position: chr17:50,193,977
INFO 2026-06-02 23:46:59 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 01:47:07s. Time for last 1,000,000: 10s. Last read position: chr17:50,194,170
INFO 2026-06-02 23:47:09 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 01:47:17s. Time for last 1,000,000: 10s. Last read position: chr17:50,194,603
INFO 2026-06-02 23:47:20 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 01:47:28s. Time for last 1,000,000: 10s. Last read position: chr17:50,195,089
INFO 2026-06-02 23:47:31 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 01:47:39s. Time for last 1,000,000: 11s. Last read position: chr17:50,195,590
INFO 2026-06-02 23:47:44 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 01:47:51s. Time for last 1,000,000: 12s. Last read position: chr17:50,196,154
INFO 2026-06-02 23:47:57 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 01:48:04s. Time for last 1,000,000: 13s. Last read position: chr17:50,196,336
INFO 2026-06-02 23:48:11 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 01:48:18s. Time for last 1,000,000: 13s. Last read position: chr17:50,197,019
INFO 2026-06-02 23:48:26 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 01:48:33s. Time for last 1,000,000: 15s. Last read position: chr17:50,197,759
INFO 2026-06-02 23:48:40 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 01:48:48s. Time for last 1,000,000: 14s. Last read position: chr17:50,199,243
INFO 2026-06-02 23:48:55 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 01:49:03s. Time for last 1,000,000: 15s. Last read position: chr17:50,199,576
INFO 2026-06-02 23:49:12 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 01:49:20s. Time for last 1,000,000: 17s. Last read position: chr17:50,388,060
INFO 2026-06-02 23:49:23 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 01:49:31s. Time for last 1,000,000: 11s. Last read position: chr17:57,257,122
INFO 2026-06-02 23:49:34 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 01:49:41s. Time for last 1,000,000: 10s. Last read position: chr17:59,682,717
INFO 2026-06-02 23:49:47 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 01:49:54s. Time for last 1,000,000: 12s. Last read position: chr17:63,746,813
INFO 2026-06-02 23:49:59 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 01:50:06s. Time for last 1,000,000: 11s. Last read position: chr17:67,854,497
INFO 2026-06-02 23:50:12 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 01:50:20s. Time for last 1,000,000: 13s. Last read position: chr17:74,204,178
INFO 2026-06-02 23:50:23 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 01:50:30s. Time for last 1,000,000: 10s. Last read position: chr17:75,543,439
INFO 2026-06-02 23:50:45 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 01:50:53s. Time for last 1,000,000: 22s. Last read position: chr17:75,876,393
INFO 2026-06-02 23:50:54 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 01:51:02s. Time for last 1,000,000: 9s. Last read position: chr17:77,320,315
INFO 2026-06-02 23:51:04 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 01:51:12s. Time for last 1,000,000: 10s. Last read position: chr17:78,993,516
INFO 2026-06-02 23:51:16 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 01:51:24s. Time for last 1,000,000: 11s. Last read position: chr17:80,347,349
INFO 2026-06-02 23:51:32 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 01:51:39s. Time for last 1,000,000: 15s. Last read position: chr17:81,511,433
INFO 2026-06-02 23:52:05 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 01:52:13s. Time for last 1,000,000: 33s. Last read position: chr17:81,855,171
INFO 2026-06-02 23:52:33 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 01:52:40s. Time for last 1,000,000: 27s. Last read position: chr17:82,082,147
INFO 2026-06-02 23:52:45 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 01:52:52s. Time for last 1,000,000: 12s. Last read position: chr17:82,630,879
INFO 2026-06-02 23:52:56 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 01:53:03s. Time for last 1,000,000: 11s. Last read position: chr18:9,208,763
INFO 2026-06-02 23:53:07 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 01:53:14s. Time for last 1,000,000: 10s. Last read position: chr18:26,035,041
INFO 2026-06-02 23:53:14 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 01:53:22s. Time for last 1,000,000: 7s. Last read position: chr18:46,089,606
INFO 2026-06-02 23:53:28 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 01:53:35s. Time for last 1,000,000: 13s. Last read position: chr18:57,436,368
INFO 2026-06-02 23:53:43 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 01:53:50s. Time for last 1,000,000: 14s. Last read position: chr18:74,513,611
INFO 2026-06-02 23:53:52 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 01:53:59s. Time for last 1,000,000: 9s. Last read position: chr19:582,526
INFO 2026-06-02 23:54:01 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 01:54:09s. Time for last 1,000,000: 9s. Last read position: chr19:1,011,767
INFO 2026-06-02 23:54:11 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 01:54:19s. Time for last 1,000,000: 10s. Last read position: chr19:1,295,570
INFO 2026-06-02 23:54:20 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 01:54:27s. Time for last 1,000,000: 8s. Last read position: chr19:1,827,661
INFO 2026-06-02 23:54:28 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 01:54:35s. Time for last 1,000,000: 7s. Last read position: chr19:2,272,970
INFO 2026-06-02 23:54:35 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 01:54:43s. Time for last 1,000,000: 7s. Last read position: chr19:3,578,043
INFO 2026-06-02 23:54:42 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 01:54:49s. Time for last 1,000,000: 6s. Last read position: chr19:4,501,965
INFO 2026-06-02 23:54:50 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 01:54:58s. Time for last 1,000,000: 8s. Last read position: chr19:5,699,026
INFO 2026-06-02 23:54:56 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 01:55:04s. Time for last 1,000,000: 6s. Last read position: chr19:6,420,135
INFO 2026-06-02 23:55:08 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 01:55:15s. Time for last 1,000,000: 11s. Last read position: chr19:7,605,244
INFO 2026-06-02 23:55:16 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 01:55:24s. Time for last 1,000,000: 8s. Last read position: chr19:9,155,975
INFO 2026-06-02 23:55:34 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 01:55:41s. Time for last 1,000,000: 17s. Last read position: chr19:10,393,330
INFO 2026-06-02 23:55:55 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 01:56:02s. Time for last 1,000,000: 21s. Last read position: chr19:11,026,341
INFO 2026-06-02 23:56:19 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 01:56:27s. Time for last 1,000,000: 24s. Last read position: chr19:11,666,578
INFO 2026-06-02 23:56:29 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 01:56:37s. Time for last 1,000,000: 10s. Last read position: chr19:12,940,249
INFO 2026-06-02 23:56:37 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 01:56:44s. Time for last 1,000,000: 7s. Last read position: chr19:14,097,617
INFO 2026-06-02 23:56:46 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 01:56:54s. Time for last 1,000,000: 9s. Last read position: chr19:14,516,904
INFO 2026-06-02 23:56:55 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 01:57:03s. Time for last 1,000,000: 9s. Last read position: chr19:15,244,269
INFO 2026-06-02 23:57:08 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 01:57:16s. Time for last 1,000,000: 12s. Last read position: chr19:16,519,094
INFO 2026-06-02 23:57:19 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 01:57:27s. Time for last 1,000,000: 10s. Last read position: chr19:17,727,421
INFO 2026-06-02 23:57:25 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 01:57:33s. Time for last 1,000,000: 5s. Last read position: chr19:18,386,375
INFO 2026-06-02 23:57:33 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 01:57:40s. Time for last 1,000,000: 7s. Last read position: chr19:18,995,028
INFO 2026-06-02 23:57:40 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 01:57:48s. Time for last 1,000,000: 7s. Last read position: chr19:32,692,296
INFO 2026-06-02 23:57:51 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 01:57:59s. Time for last 1,000,000: 11s. Last read position: chr19:35,250,409
INFO 2026-06-02 23:58:01 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 01:58:09s. Time for last 1,000,000: 9s. Last read position: chr19:36,089,066
INFO 2026-06-02 23:58:11 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 01:58:19s. Time for last 1,000,000: 10s. Last read position: chr19:38,700,686
INFO 2026-06-02 23:58:21 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 01:58:28s. Time for last 1,000,000: 9s. Last read position: chr19:39,388,837
INFO 2026-06-02 23:58:28 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 01:58:36s. Time for last 1,000,000: 7s. Last read position: chr19:39,863,337
INFO 2026-06-02 23:58:30 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 01:58:38s. Time for last 1,000,000: 2s. Last read position: chr19:39,885,709
INFO 2026-06-02 23:58:34 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 01:58:42s. Time for last 1,000,000: 3s. Last read position: chr19:39,894,064
INFO 2026-06-02 23:58:39 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 01:58:47s. Time for last 1,000,000: 5s. Last read position: chr19:39,927,602
INFO 2026-06-02 23:58:57 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 01:59:04s. Time for last 1,000,000: 17s. Last read position: chr19:40,786,707
INFO 2026-06-02 23:59:05 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 01:59:13s. Time for last 1,000,000: 8s. Last read position: chr19:41,720,192
INFO 2026-06-02 23:59:14 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 01:59:22s. Time for last 1,000,000: 9s. Last read position: chr19:42,271,916
INFO 2026-06-02 23:59:23 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 01:59:31s. Time for last 1,000,000: 8s. Last read position: chr19:43,526,274
INFO 2026-06-02 23:59:28 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 01:59:36s. Time for last 1,000,000: 5s. Last read position: chr19:44,909,013
INFO 2026-06-02 23:59:37 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 01:59:45s. Time for last 1,000,000: 8s. Last read position: chr19:45,713,390
INFO 2026-06-02 23:59:46 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 01:59:54s. Time for last 1,000,000: 8s. Last read position: chr19:47,066,817
INFO 2026-06-02 23:59:54 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 02:00:01s. Time for last 1,000,000: 7s. Last read position: chr19:48,478,459
INFO 2026-06-03 00:00:00 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 02:00:07s. Time for last 1,000,000: 5s. Last read position: chr19:48,956,224
INFO 2026-06-03 00:00:11 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 02:00:19s. Time for last 1,000,000: 11s. Last read position: chr19:49,490,833
INFO 2026-06-03 00:00:18 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 02:00:26s. Time for last 1,000,000: 6s. Last read position: chr19:49,686,678
INFO 2026-06-03 00:00:39 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 02:00:46s. Time for last 1,000,000: 20s. Last read position: chr19:50,378,196
INFO 2026-06-03 00:00:45 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 02:00:52s. Time for last 1,000,000: 6s. Last read position: chr19:53,454,908
INFO 2026-06-03 00:00:53 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 02:01:01s. Time for last 1,000,000: 8s. Last read position: chr19:54,456,890
INFO 2026-06-03 00:01:01 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 02:01:09s. Time for last 1,000,000: 8s. Last read position: chr19:55,388,001
INFO 2026-06-03 00:01:06 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 02:01:13s. Time for last 1,000,000: 4s. Last read position: chr19:57,808,680
INFO 2026-06-03 00:01:12 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 02:01:20s. Time for last 1,000,000: 6s. Last read position: chr20:396,208
INFO 2026-06-03 00:01:22 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 02:01:29s. Time for last 1,000,000: 9s. Last read position: chr20:3,690,248
INFO 2026-06-03 00:01:30 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 02:01:37s. Time for last 1,000,000: 7s. Last read position: chr20:17,600,740
INFO 2026-06-03 00:01:44 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 02:01:52s. Time for last 1,000,000: 14s. Last read position: chr20:20,393,164
INFO 2026-06-03 00:01:53 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 02:02:00s. Time for last 1,000,000: 8s. Last read position: chr20:31,782,266
INFO 2026-06-03 00:02:02 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 02:02:09s. Time for last 1,000,000: 8s. Last read position: chr20:34,882,926
INFO 2026-06-03 00:02:17 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 02:02:25s. Time for last 1,000,000: 15s. Last read position: chr20:36,656,364
INFO 2026-06-03 00:02:26 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 02:02:33s. Time for last 1,000,000: 8s. Last read position: chr20:43,460,535
INFO 2026-06-03 00:02:40 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 02:02:48s. Time for last 1,000,000: 14s. Last read position: chr20:45,952,279
INFO 2026-06-03 00:02:50 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 02:02:58s. Time for last 1,000,000: 9s. Last read position: chr20:50,191,075
INFO 2026-06-03 00:03:01 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 02:03:09s. Time for last 1,000,000: 11s. Last read position: chr20:58,909,399
INFO 2026-06-03 00:03:17 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 02:03:24s. Time for last 1,000,000: 15s. Last read position: chr20:62,387,352
INFO 2026-06-03 00:03:22 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 02:03:30s. Time for last 1,000,000: 5s. Last read position: chr20:63,567,380
INFO 2026-06-03 00:03:29 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 02:03:36s. Time for last 1,000,000: 6s. Last read position: chr21:8,208,180
INFO 2026-06-03 00:03:30 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 02:03:37s. Time for last 1,000,000: 0s. Last read position: chr21:8,399,124
INFO 2026-06-03 00:03:31 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 02:03:38s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,708
INFO 2026-06-03 00:03:41 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 02:03:48s. Time for last 1,000,000: 10s. Last read position: chr21:29,062,177
INFO 2026-06-03 00:03:50 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 02:03:58s. Time for last 1,000,000: 9s. Last read position: chr21:34,523,638
INFO 2026-06-03 00:04:08 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 02:04:16s. Time for last 1,000,000: 18s. Last read position: chr21:41,243,483
INFO 2026-06-03 00:04:27 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 02:04:34s. Time for last 1,000,000: 18s. Last read position: chr21:42,363,302
INFO 2026-06-03 00:04:34 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 02:04:42s. Time for last 1,000,000: 7s. Last read position: chr21:44,814,069
INFO 2026-06-03 00:04:46 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 02:04:54s. Time for last 1,000,000: 12s. Last read position: chr21:46,002,270
INFO 2026-06-03 00:04:59 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 02:05:06s. Time for last 1,000,000: 12s. Last read position: chr21:46,425,894
INFO 2026-06-03 00:05:10 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 02:05:18s. Time for last 1,000,000: 11s. Last read position: chr22:20,064,508
INFO 2026-06-03 00:05:23 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 02:05:31s. Time for last 1,000,000: 13s. Last read position: chr22:22,906,535
INFO 2026-06-03 00:05:31 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 02:05:38s. Time for last 1,000,000: 7s. Last read position: chr22:24,119,399
INFO 2026-06-03 00:05:40 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 02:05:47s. Time for last 1,000,000: 8s. Last read position: chr22:29,273,757
INFO 2026-06-03 00:05:58 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 02:06:05s. Time for last 1,000,000: 18s. Last read position: chr22:30,244,844
INFO 2026-06-03 00:06:13 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 02:06:21s. Time for last 1,000,000: 15s. Last read position: chr22:31,956,181
INFO 2026-06-03 00:06:21 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 02:06:28s. Time for last 1,000,000: 7s. Last read position: chr22:36,295,685
INFO 2026-06-03 00:06:28 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 02:06:35s. Time for last 1,000,000: 7s. Last read position: chr22:37,566,786
INFO 2026-06-03 00:06:38 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 02:06:45s. Time for last 1,000,000: 9s. Last read position: chr22:38,300,850
INFO 2026-06-03 00:06:44 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 02:06:52s. Time for last 1,000,000: 6s. Last read position: chr22:40,265,802
INFO 2026-06-03 00:06:57 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 02:07:05s. Time for last 1,000,000: 12s. Last read position: chr22:41,647,063
INFO 2026-06-03 00:07:03 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 02:07:11s. Time for last 1,000,000: 6s. Last read position: chr22:43,173,735
INFO 2026-06-03 00:07:13 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 02:07:21s. Time for last 1,000,000: 9s. Last read position: chr22:49,887,023
INFO 2026-06-03 00:07:25 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 02:07:33s. Time for last 1,000,000: 11s. Last read position: chr22:50,290,486
INFO 2026-06-03 00:07:35 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 02:07:42s. Time for last 1,000,000: 9s. Last read position: chrX:1,386,748
INFO 2026-06-03 00:07:38 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 02:07:45s. Time for last 1,000,000: 3s. Last read position: chrX:11,120,934
INFO 2026-06-03 00:07:46 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 02:07:53s. Time for last 1,000,000: 7s. Last read position: chrX:24,055,025
INFO 2026-06-03 00:07:58 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 02:08:06s. Time for last 1,000,000: 12s. Last read position: chrX:41,197,464
INFO 2026-06-03 00:08:26 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 02:08:34s. Time for last 1,000,000: 28s. Last read position: chrX:47,563,273
INFO 2026-06-03 00:08:37 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 02:08:44s. Time for last 1,000,000: 10s. Last read position: chrX:49,074,888
INFO 2026-06-03 00:08:46 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 02:08:54s. Time for last 1,000,000: 9s. Last read position: chrX:53,548,053
INFO 2026-06-03 00:09:04 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 02:09:12s. Time for last 1,000,000: 17s. Last read position: chrX:68,829,717
INFO 2026-06-03 00:09:19 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 02:09:26s. Time for last 1,000,000: 14s. Last read position: chrX:72,272,626
INFO 2026-06-03 00:09:29 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 02:09:36s. Time for last 1,000,000: 10s. Last read position: chrX:87,703,293
INFO 2026-06-03 00:09:37 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 02:09:44s. Time for last 1,000,000: 7s. Last read position: chrX:118,727,652
INFO 2026-06-03 00:09:47 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 02:09:54s. Time for last 1,000,000: 10s. Last read position: chrX:133,671,151
INFO 2026-06-03 00:09:54 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 02:10:02s. Time for last 1,000,000: 7s. Last read position: chrX:153,797,520
INFO 2026-06-03 00:10:08 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 02:10:15s. Time for last 1,000,000: 13s. Last read position: chrX:154,359,509
INFO 2026-06-03 00:10:36 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 02:10:44s. Time for last 1,000,000: 28s. Last read position: chrX:154,640,422
INFO 2026-06-03 00:10:38 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 02:10:46s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,519
INFO 2026-06-03 00:10:39 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 02:10:47s. Time for last 1,000,000: 0s. Last read position: GL000220.1:159,491
INFO 2026-06-03 00:10:40 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 02:10:47s. Time for last 1,000,000: 0s. Last read position: KI270733.1:133,643
INFO 2026-06-03 00:10:40 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 02:10:48s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 00:10:41 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 02:10:49s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 00:10:42 SinglePassSamProgram Processed 638,000,000 records. Elapsed time: 02:10:49s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 00:10:42 SinglePassSamProgram Processed 639,000,000 records. Elapsed time: 02:10:50s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 00:10:43 SinglePassSamProgram Processed 640,000,000 records. Elapsed time: 02:10:51s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 00:10:44 SinglePassSamProgram Processed 641,000,000 records. Elapsed time: 02:10:51s. Time for last 1,000,000: 0s. Last read position: */*
[Wed Jun 03 00:10:45 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 130.92 minutes.
Runtime.totalMemory()=3436707840