Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/e0eb8cc5fd45a5edca7e4773c20949/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/e0eb8cc5fd45a5edca7e4773c20949/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/9c5f9b00a1f3362d1fa8e3399f49a4/659_bR4-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/f94fc4c8bed99c0ae3ee8dde4566a4/659_bR4-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bR4-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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