File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/4cd7fb5e21a521c17749c8ccacf10a/output/Logs/Info.log
Size
2.8 KB
Attempt
2026-06-02T20:01:06Z thread 386 Sample sheet being processed by common lib? Yes
2026-06-02T20:01:06Z thread 386 SampleSheet Settings: 
2026-06-02T20:01:06Z thread 386   OverrideCycles = Y150;I8;I8;Y150
2026-06-02T20:01:06Z thread 386 
2026-06-02T20:01:06Z thread 386 shared-thread-linux-native-asio output is disabled
2026-06-02T20:01:06Z thread 386 bcl-convert Version 4.4.6
2026-06-02T20:01:06Z thread 386 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-02T20:01:06Z thread 386 Command Line: --tiles s_2 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-02T20:01:06Z thread 386 Conversion Begins.
2026-06-02T20:01:06Z thread 386 Input BCL Information:
2026-06-02T20:01:06Z thread 386     Read Structure: 2026-06-02T20:01:06Z thread 386 Y1502026-06-02T20:01:06Z thread 386 ;2026-06-02T20:01:06Z thread 386 I82026-06-02T20:01:06Z thread 386 ;2026-06-02T20:01:06Z thread 386 I82026-06-02T20:01:06Z thread 386 ;2026-06-02T20:01:06Z thread 386 Y1502026-06-02T20:01:06Z thread 386 
2026-06-02T20:01:06Z thread 386     RunInfo.xml file lists: 4 lanes, 4 tiles
2026-06-02T20:01:06Z thread 386     BCL file format: bcl.gz
2026-06-02T20:01:06Z thread 386     Positions file format: locs
2026-06-02T20:01:06Z thread 386     Filter file format: filter
2026-06-02T20:01:06Z thread 386 Conversion Information:
2026-06-02T20:01:06Z thread 386     Tile filtering: converting 1/4 tiles
2026-06-02T20:01:06Z thread 386     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-02T20:01:06Z thread 386     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-02T20:01:06Z thread 386     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-02T20:01:06Z thread 386     Sample Count: 2
2026-06-02T20:01:06Z thread 386     Expected number of sample FASTQ files to be created: 4
2026-06-02T20:01:06Z thread 386 # CPU hw threads available: 64
2026-06-02T20:01:06Z thread 386 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-02T20:01:06Z thread 386 SW compressors: 64
2026-06-02T20:01:06Z thread 386 SW decompressors: 32
2026-06-02T20:01:06Z thread 386 SW FASTQ compression level: 1
2026-06-02T20:01:09Z thread 386 Lane 2 Post-run Information:
2026-06-02T20:01:09Z thread 386     Total clusters: 5000000
2026-06-02T20:01:09Z thread 386     Total Genomic Reads: 10000000
2026-06-02T20:01:09Z thread 386     Total Genomic Input Gigabases 1.50
2026-06-02T20:01:09Z thread 386     Minimum reads for a sample: 4999236
2026-06-02T20:01:09Z thread 386     Maximum reads for a sample: 5000764
2026-06-02T20:01:09Z thread 386     Average reads per sample: 5000000.00
2026-06-02T20:01:09Z thread 386     Undetermined reads: 0
2026-06-02T20:01:09Z thread 386 Conversion Complete.