File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/4ef4e6a8769e3f708fccb9dadc0e18/output/Logs/Info.log
Size
2.8 KB
Attempt
2026-06-02T20:01:06Z thread 420 Sample sheet being processed by common lib? Yes
2026-06-02T20:01:06Z thread 420 SampleSheet Settings: 
2026-06-02T20:01:06Z thread 420   OverrideCycles = Y150;I8;I8;Y150
2026-06-02T20:01:06Z thread 420 
2026-06-02T20:01:06Z thread 420 shared-thread-linux-native-asio output is disabled
2026-06-02T20:01:06Z thread 420 bcl-convert Version 4.4.6
2026-06-02T20:01:06Z thread 420 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-02T20:01:06Z thread 420 Command Line: --tiles s_1 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-02T20:01:06Z thread 420 Conversion Begins.
2026-06-02T20:01:06Z thread 420 Input BCL Information:
2026-06-02T20:01:06Z thread 420     Read Structure: 2026-06-02T20:01:06Z thread 420 Y1502026-06-02T20:01:06Z thread 420 ;2026-06-02T20:01:06Z thread 420 I82026-06-02T20:01:06Z thread 420 ;2026-06-02T20:01:06Z thread 420 I82026-06-02T20:01:06Z thread 420 ;2026-06-02T20:01:06Z thread 420 Y1502026-06-02T20:01:06Z thread 420 
2026-06-02T20:01:06Z thread 420     RunInfo.xml file lists: 4 lanes, 4 tiles
2026-06-02T20:01:06Z thread 420     BCL file format: bcl.gz
2026-06-02T20:01:06Z thread 420     Positions file format: locs
2026-06-02T20:01:06Z thread 420     Filter file format: filter
2026-06-02T20:01:06Z thread 420 Conversion Information:
2026-06-02T20:01:06Z thread 420     Tile filtering: converting 1/4 tiles
2026-06-02T20:01:06Z thread 420     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-02T20:01:06Z thread 420     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-02T20:01:06Z thread 420     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-02T20:01:06Z thread 420     Sample Count: 2
2026-06-02T20:01:06Z thread 420     Expected number of sample FASTQ files to be created: 4
2026-06-02T20:01:06Z thread 420 # CPU hw threads available: 64
2026-06-02T20:01:06Z thread 420 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-02T20:01:06Z thread 420 SW compressors: 64
2026-06-02T20:01:06Z thread 420 SW decompressors: 32
2026-06-02T20:01:06Z thread 420 SW FASTQ compression level: 1
2026-06-02T20:01:09Z thread 420 Lane 1 Post-run Information:
2026-06-02T20:01:09Z thread 420     Total clusters: 5000000
2026-06-02T20:01:09Z thread 420     Total Genomic Reads: 10000000
2026-06-02T20:01:09Z thread 420     Total Genomic Input Gigabases 1.50
2026-06-02T20:01:09Z thread 420     Minimum reads for a sample: 4999006
2026-06-02T20:01:09Z thread 420     Maximum reads for a sample: 5000994
2026-06-02T20:01:09Z thread 420     Average reads per sample: 5000000.00
2026-06-02T20:01:09Z thread 420     Undetermined reads: 0
2026-06-02T20:01:09Z thread 420 Conversion Complete.