Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ctat_ref_annot.interval_list
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/d7b07eeda4e11d03d706e6270a13c3/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/d7b07eeda4e11d03d706e6270a13c3/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/63b8428081ee8ca9775d7dec767bdd/659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ref_annot.gtf.refflat
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/9884768d1ea642d5ab438e4b794651/659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (6 inputs)
/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
Jun 02, 2026 10:09:48 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Tue Jun 02 22:09:48 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT 659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bKP-T1-TRNA-1_B23MHV2LT4_1_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Tue Jun 02 22:09:48 GMT 2026] Executing as ?@nf-4ed7b07eeda4e11d03d706e6270a13c3-67345-mjbsn on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
WARNING: BAM index file /tmp/nxf.XXXX0vpKw8/659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXX0vpKw8/659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
INFO 2026-06-02 22:09:50 CollectRnaSeqMetrics Loaded 58279 genes.
INFO 2026-06-02 22:10:02 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 11s. Last read position: chr1:1,313,868
INFO 2026-06-02 22:10:14 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 12s. Last read position: chr1:1,815,755
INFO 2026-06-02 22:10:25 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 11s. Last read position: chr1:6,640,054
INFO 2026-06-02 22:10:34 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 8s. Last read position: chr1:10,101,174
INFO 2026-06-02 22:10:46 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 12s. Last read position: chr1:11,974,758
INFO 2026-06-02 22:10:59 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 12s. Last read position: chr1:15,936,059
INFO 2026-06-02 22:11:07 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 8s. Last read position: chr1:19,113,753
INFO 2026-06-02 22:11:20 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 13s. Last read position: chr1:20,744,816
INFO 2026-06-02 22:11:35 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 15s. Last read position: chr1:21,887,479
INFO 2026-06-02 22:11:40 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 4s. Last read position: chr1:23,053,798
INFO 2026-06-02 22:11:47 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 7s. Last read position: chr1:24,929,841
INFO 2026-06-02 22:11:56 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 8s. Last read position: chr1:26,780,428
INFO 2026-06-02 22:12:00 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 4s. Last read position: chr1:28,269,210
INFO 2026-06-02 22:12:12 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 12s. Last read position: chr1:31,915,964
INFO 2026-06-02 22:12:24 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 12s. Last read position: chr1:32,826,264
INFO 2026-06-02 22:12:31 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 6s. Last read position: chr1:35,749,478
INFO 2026-06-02 22:12:37 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 6s. Last read position: chr1:39,250,009
INFO 2026-06-02 22:13:32 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 54s. Last read position: chr1:40,758,167
INFO 2026-06-02 22:13:41 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 9s. Last read position: chr1:43,442,956
INFO 2026-06-02 22:13:53 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 11s. Last read position: chr1:45,515,767
INFO 2026-06-02 22:14:02 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 9s. Last read position: chr1:50,567,114
INFO 2026-06-02 22:14:16 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 13s. Last read position: chr1:54,785,986
INFO 2026-06-02 22:14:31 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 15s. Last read position: chr1:66,847,507
INFO 2026-06-02 22:14:43 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 11s. Last read position: chr1:84,495,385
INFO 2026-06-02 22:14:48 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 5s. Last read position: chr1:89,120,223
INFO 2026-06-02 22:14:53 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 5s. Last read position: chr1:94,530,483
INFO 2026-06-02 22:15:03 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 9s. Last read position: chr1:109,280,200
INFO 2026-06-02 22:15:13 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 10s. Last read position: chr1:112,521,922
INFO 2026-06-02 22:15:22 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 8s. Last read position: chr1:114,716,083
INFO 2026-06-02 22:15:33 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 10s. Last read position: chr1:119,803,119
INFO 2026-06-02 22:15:39 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 5s. Last read position: chr1:144,429,841
INFO 2026-06-02 22:15:47 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 8s. Last read position: chr1:147,936,664
INFO 2026-06-02 22:15:54 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 6s. Last read position: chr1:149,832,817
INFO 2026-06-02 22:15:55 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr1:149,851,442
INFO 2026-06-02 22:15:57 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 2s. Last read position: chr1:150,226,781
INFO 2026-06-02 22:16:05 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 7s. Last read position: chr1:151,166,338
INFO 2026-06-02 22:16:11 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 6s. Last read position: chr1:153,662,774
INFO 2026-06-02 22:16:22 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 10s. Last read position: chr1:154,172,944
INFO 2026-06-02 22:16:48 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 26s. Last read position: chr1:154,602,375
INFO 2026-06-02 22:17:05 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 16s. Last read position: chr1:155,189,472
INFO 2026-06-02 22:17:23 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 18s. Last read position: chr1:155,660,558
INFO 2026-06-02 22:17:41 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 17s. Last read position: chr1:156,136,932
INFO 2026-06-02 22:17:57 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 16s. Last read position: chr1:156,939,735
INFO 2026-06-02 22:18:09 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 11s. Last read position: chr1:160,685,141
INFO 2026-06-02 22:18:21 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 12s. Last read position: chr1:161,766,416
INFO 2026-06-02 22:18:27 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 6s. Last read position: chr1:169,127,365
INFO 2026-06-02 22:18:39 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 11s. Last read position: chr1:172,610,085
INFO 2026-06-02 22:18:47 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 8s. Last read position: chr1:181,089,607
INFO 2026-06-02 22:18:54 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 7s. Last read position: chr1:186,320,298
INFO 2026-06-02 22:19:05 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 10s. Last read position: chr1:197,199,692
INFO 2026-06-02 22:19:13 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 8s. Last read position: chr1:202,148,648
INFO 2026-06-02 22:19:23 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 9s. Last read position: chr1:204,464,474
INFO 2026-06-02 22:19:28 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 5s. Last read position: chr1:206,939,365
INFO 2026-06-02 22:19:36 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 8s. Last read position: chr1:212,686,758
INFO 2026-06-02 22:19:42 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 5s. Last read position: chr1:222,687,611
INFO 2026-06-02 22:19:49 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 7s. Last read position: chr1:226,161,604
INFO 2026-06-02 22:20:05 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 16s. Last read position: chr1:230,255,154
INFO 2026-06-02 22:20:16 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 11s. Last read position: chr1:236,540,630
INFO 2026-06-02 22:20:34 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 17s. Last read position: chr1:244,863,908
INFO 2026-06-02 22:20:45 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 10s. Last read position: chr2:8,860,633
INFO 2026-06-02 22:20:54 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 9s. Last read position: chr2:15,595,149
INFO 2026-06-02 22:21:07 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 13s. Last read position: chr2:24,918,488
INFO 2026-06-02 22:21:17 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 9s. Last read position: chr2:27,367,077
INFO 2026-06-02 22:21:24 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 7s. Last read position: chr2:32,401,620
INFO 2026-06-02 22:21:34 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 9s. Last read position: chr2:32,916,264
INFO 2026-06-02 22:21:40 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 6s. Last read position: chr2:32,916,366
INFO 2026-06-02 22:21:42 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-02 22:21:47 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 5s. Last read position: chr2:38,585,657
INFO 2026-06-02 22:21:56 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 8s. Last read position: chr2:43,527,988
INFO 2026-06-02 22:22:09 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 12s. Last read position: chr2:47,379,933
INFO 2026-06-02 22:22:19 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 10s. Last read position: chr2:54,646,414
INFO 2026-06-02 22:22:40 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 20s. Last read position: chr2:60,953,952
INFO 2026-06-02 22:23:05 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 24s. Last read position: chr2:65,255,563
INFO 2026-06-02 22:23:29 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 23s. Last read position: chr2:71,178,670
INFO 2026-06-02 22:23:43 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 14s. Last read position: chr2:74,460,701
INFO 2026-06-02 22:23:50 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 6s. Last read position: chr2:85,542,155
INFO 2026-06-02 22:23:56 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 6s. Last read position: chr2:88,857,261
INFO 2026-06-02 22:23:59 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 2s. Last read position: chr2:95,927,231
INFO 2026-06-02 22:24:08 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 9s. Last read position: chr2:97,818,645
INFO 2026-06-02 22:24:18 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 9s. Last read position: chr2:106,096,784
INFO 2026-06-02 22:24:22 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 4s. Last read position: chr2:108,766,468
INFO 2026-06-02 22:24:27 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 5s. Last read position: chr2:111,164,133
INFO 2026-06-02 22:24:34 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 6s. Last read position: chr2:117,829,340
INFO 2026-06-02 22:24:46 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 12s. Last read position: chr2:130,182,414
INFO 2026-06-02 22:24:55 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 8s. Last read position: chr2:144,398,319
INFO 2026-06-02 22:25:07 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 11s. Last read position: chr2:159,282,717
INFO 2026-06-02 22:25:20 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 13s. Last read position: chr2:170,929,391
INFO 2026-06-02 22:25:32 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 11s. Last read position: chr2:174,572,310
INFO 2026-06-02 22:26:08 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 35s. Last read position: chr2:181,485,988
INFO 2026-06-02 22:26:22 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 14s. Last read position: chr2:189,006,228
INFO 2026-06-02 22:26:37 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 15s. Last read position: chr2:190,982,473
INFO 2026-06-02 22:27:10 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 32s. Last read position: chr2:197,494,656
INFO 2026-06-02 22:27:31 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 20s. Last read position: chr2:203,107,833
INFO 2026-06-02 22:27:41 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 10s. Last read position: chr2:213,296,080
INFO 2026-06-02 22:28:10 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 28s. Last read position: chr2:215,407,124
INFO 2026-06-02 22:28:51 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 40s. Last read position: chr2:218,217,514
INFO 2026-06-02 22:29:01 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 9s. Last read position: chr2:219,250,473
INFO 2026-06-02 22:29:11 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 9s. Last read position: chr2:227,553,770
INFO 2026-06-02 22:29:35 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 24s. Last read position: chr2:231,458,381
INFO 2026-06-02 22:29:54 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 18s. Last read position: chr2:233,458,377
INFO 2026-06-02 22:30:13 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 18s. Last read position: chr2:238,239,457
INFO 2026-06-02 22:30:31 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 18s. Last read position: chr2:241,262,916
INFO 2026-06-02 22:30:51 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 19s. Last read position: chr3:9,803,984
INFO 2026-06-02 22:31:03 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 12s. Last read position: chr3:12,941,811
INFO 2026-06-02 22:31:11 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 8s. Last read position: chr3:23,134,668
INFO 2026-06-02 22:31:24 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 12s. Last read position: chr3:33,865,297
INFO 2026-06-02 22:31:34 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 9s. Last read position: chr3:39,411,674
INFO 2026-06-02 22:31:56 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 22s. Last read position: chr3:44,579,244
INFO 2026-06-02 22:32:07 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 10s. Last read position: chr3:47,122,402
INFO 2026-06-02 22:32:19 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 11s. Last read position: chr3:48,440,401
INFO 2026-06-02 22:32:35 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:22:44s. Time for last 1,000,000: 15s. Last read position: chr3:49,028,450
INFO 2026-06-02 22:32:48 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 13s. Last read position: chr3:49,713,985
INFO 2026-06-02 22:32:59 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:23:09s. Time for last 1,000,000: 11s. Last read position: chr3:51,420,254
INFO 2026-06-02 22:33:09 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:23:19s. Time for last 1,000,000: 9s. Last read position: chr3:52,524,676
INFO 2026-06-02 22:33:21 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:23:31s. Time for last 1,000,000: 11s. Last read position: chr3:58,077,153
INFO 2026-06-02 22:33:40 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:23:49s. Time for last 1,000,000: 18s. Last read position: chr3:69,044,492
INFO 2026-06-02 22:33:52 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:24:02s. Time for last 1,000,000: 12s. Last read position: chr3:100,713,723
INFO 2026-06-02 22:34:07 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:24:16s. Time for last 1,000,000: 14s. Last read position: chr3:112,558,386
INFO 2026-06-02 22:34:15 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:24:24s. Time for last 1,000,000: 7s. Last read position: chr3:121,729,886
INFO 2026-06-02 22:34:23 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:24:32s. Time for last 1,000,000: 8s. Last read position: chr3:124,773,869
INFO 2026-06-02 22:34:28 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:24:38s. Time for last 1,000,000: 5s. Last read position: chr3:128,055,514
INFO 2026-06-02 22:34:36 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:24:46s. Time for last 1,000,000: 7s. Last read position: chr3:129,451,952
INFO 2026-06-02 22:34:50 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:24:59s. Time for last 1,000,000: 13s. Last read position: chr3:136,369,220
INFO 2026-06-02 22:35:05 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:25:14s. Time for last 1,000,000: 15s. Last read position: chr3:146,517,160
INFO 2026-06-02 22:35:13 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:25:23s. Time for last 1,000,000: 8s. Last read position: chr3:157,148,531
INFO 2026-06-02 22:35:24 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:25:33s. Time for last 1,000,000: 10s. Last read position: chr3:171,167,218
INFO 2026-06-02 22:35:37 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:25:46s. Time for last 1,000,000: 12s. Last read position: chr3:183,747,670
INFO 2026-06-02 22:35:58 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:26:07s. Time for last 1,000,000: 20s. Last read position: chr3:184,326,570
INFO 2026-06-02 22:36:14 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:26:24s. Time for last 1,000,000: 16s. Last read position: chr3:187,729,637
INFO 2026-06-02 22:36:28 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:26:37s. Time for last 1,000,000: 13s. Last read position: chr3:195,778,941
INFO 2026-06-02 22:36:50 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:26:59s. Time for last 1,000,000: 21s. Last read position: chr3:195,782,706
INFO 2026-06-02 22:37:20 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:27:30s. Time for last 1,000,000: 30s. Last read position: chr3:195,786,725
INFO 2026-06-02 22:37:44 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:27:53s. Time for last 1,000,000: 23s. Last read position: chr3:197,682,580
INFO 2026-06-02 22:37:54 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:28:03s. Time for last 1,000,000: 10s. Last read position: chr4:1,717,150
INFO 2026-06-02 22:38:09 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:28:18s. Time for last 1,000,000: 14s. Last read position: chr4:2,907,752
INFO 2026-06-02 22:38:25 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:28:34s. Time for last 1,000,000: 16s. Last read position: chr4:7,772,803
INFO 2026-06-02 22:38:34 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:28:44s. Time for last 1,000,000: 9s. Last read position: chr4:20,704,694
INFO 2026-06-02 22:38:44 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:28:53s. Time for last 1,000,000: 9s. Last read position: chr4:39,291,731
INFO 2026-06-02 22:38:53 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:29:02s. Time for last 1,000,000: 9s. Last read position: chr4:48,543,837
INFO 2026-06-02 22:39:04 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:29:14s. Time for last 1,000,000: 11s. Last read position: chr4:57,110,093
INFO 2026-06-02 22:39:11 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:29:21s. Time for last 1,000,000: 7s. Last read position: chr4:75,012,804
INFO 2026-06-02 22:39:22 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:29:31s. Time for last 1,000,000: 10s. Last read position: chr4:77,056,278
INFO 2026-06-02 22:39:37 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:29:46s. Time for last 1,000,000: 15s. Last read position: chr4:86,751,096
INFO 2026-06-02 22:39:45 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:29:55s. Time for last 1,000,000: 8s. Last read position: chr4:102,305,073
INFO 2026-06-02 22:39:56 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:30:06s. Time for last 1,000,000: 11s. Last read position: chr4:112,618,720
INFO 2026-06-02 22:40:14 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:30:23s. Time for last 1,000,000: 17s. Last read position: chr4:127,823,567
INFO 2026-06-02 22:40:22 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:30:31s. Time for last 1,000,000: 7s. Last read position: chr4:145,902,789
INFO 2026-06-02 22:40:45 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:30:55s. Time for last 1,000,000: 23s. Last read position: chr4:155,710,934
INFO 2026-06-02 22:40:55 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:31:04s. Time for last 1,000,000: 9s. Last read position: chr4:184,418,195
INFO 2026-06-02 22:41:04 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:31:13s. Time for last 1,000,000: 8s. Last read position: chr5:1,280,268
INFO 2026-06-02 22:41:13 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:31:22s. Time for last 1,000,000: 8s. Last read position: chr5:14,293,053
INFO 2026-06-02 22:41:33 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:31:42s. Time for last 1,000,000: 19s. Last read position: chr5:32,599,106
INFO 2026-06-02 22:41:45 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:31:55s. Time for last 1,000,000: 12s. Last read position: chr5:40,834,232
INFO 2026-06-02 22:41:55 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:32:05s. Time for last 1,000,000: 10s. Last read position: chr5:58,459,012
INFO 2026-06-02 22:42:07 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:32:16s. Time for last 1,000,000: 11s. Last read position: chr5:70,219,936
INFO 2026-06-02 22:42:15 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:32:25s. Time for last 1,000,000: 8s. Last read position: chr5:75,350,852
INFO 2026-06-02 22:42:25 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:32:34s. Time for last 1,000,000: 9s. Last read position: chr5:83,539,138
INFO 2026-06-02 22:42:48 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:32:58s. Time for last 1,000,000: 23s. Last read position: chr5:98,876,439
INFO 2026-06-02 22:42:58 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:33:08s. Time for last 1,000,000: 9s. Last read position: chr5:119,493,885
INFO 2026-06-02 22:43:12 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:33:21s. Time for last 1,000,000: 13s. Last read position: chr5:131,439,585
INFO 2026-06-02 22:43:23 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:33:32s. Time for last 1,000,000: 11s. Last read position: chr5:134,608,392
INFO 2026-06-02 22:43:31 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:33:41s. Time for last 1,000,000: 8s. Last read position: chr5:138,558,491
INFO 2026-06-02 22:43:49 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:33:58s. Time for last 1,000,000: 17s. Last read position: chr5:140,567,924
INFO 2026-06-02 22:43:56 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:34:05s. Time for last 1,000,000: 7s. Last read position: chr5:141,625,238
INFO 2026-06-02 22:44:12 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:34:21s. Time for last 1,000,000: 15s. Last read position: chr5:150,045,460
INFO 2026-06-02 22:44:22 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:34:31s. Time for last 1,000,000: 9s. Last read position: chr5:150,402,227
INFO 2026-06-02 22:44:29 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:34:39s. Time for last 1,000,000: 7s. Last read position: chr5:150,406,297
INFO 2026-06-02 22:44:39 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:34:49s. Time for last 1,000,000: 9s. Last read position: chr5:151,253,273
INFO 2026-06-02 22:44:53 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:35:03s. Time for last 1,000,000: 13s. Last read position: chr5:157,791,884
INFO 2026-06-02 22:45:03 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:35:12s. Time for last 1,000,000: 9s. Last read position: chr5:171,387,990
INFO 2026-06-02 22:45:25 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:35:34s. Time for last 1,000,000: 21s. Last read position: chr5:171,400,168
INFO 2026-06-02 22:45:43 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:35:53s. Time for last 1,000,000: 18s. Last read position: chr5:176,397,658
INFO 2026-06-02 22:45:52 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:36:01s. Time for last 1,000,000: 8s. Last read position: chr5:177,592,629
INFO 2026-06-02 22:46:20 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:36:29s. Time for last 1,000,000: 27s. Last read position: chr5:179,724,732
INFO 2026-06-02 22:46:37 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:36:46s. Time for last 1,000,000: 17s. Last read position: chr5:179,879,723
INFO 2026-06-02 22:46:48 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:36:57s. Time for last 1,000,000: 10s. Last read position: chr6:2,115,868
INFO 2026-06-02 22:46:55 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:37:04s. Time for last 1,000,000: 7s. Last read position: chr6:7,231,528
INFO 2026-06-02 22:47:02 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:37:12s. Time for last 1,000,000: 7s. Last read position: chr6:13,616,484
INFO 2026-06-02 22:47:10 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:37:19s. Time for last 1,000,000: 7s. Last read position: chr6:25,969,325
INFO 2026-06-02 22:47:11 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:37:21s. Time for last 1,000,000: 1s. Last read position: chr6:26,158,333
INFO 2026-06-02 22:47:14 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:37:23s. Time for last 1,000,000: 2s. Last read position: chr6:26,598,382
INFO 2026-06-02 22:47:15 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:37:25s. Time for last 1,000,000: 1s. Last read position: chr6:27,810,122
INFO 2026-06-02 22:47:17 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:37:26s. Time for last 1,000,000: 1s. Last read position: chr6:27,893,602
INFO 2026-06-02 22:47:23 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:37:32s. Time for last 1,000,000: 5s. Last read position: chr6:29,945,519
INFO 2026-06-02 22:47:27 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:37:36s. Time for last 1,000,000: 4s. Last read position: chr6:30,730,521
INFO 2026-06-02 22:47:38 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:37:47s. Time for last 1,000,000: 10s. Last read position: chr6:31,355,576
INFO 2026-06-02 22:47:46 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:37:55s. Time for last 1,000,000: 7s. Last read position: chr6:31,639,500
INFO 2026-06-02 22:47:55 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:38:05s. Time for last 1,000,000: 9s. Last read position: chr6:31,829,226
INFO 2026-06-02 22:48:05 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:38:15s. Time for last 1,000,000: 10s. Last read position: chr6:32,197,343
INFO 2026-06-02 22:48:10 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:38:19s. Time for last 1,000,000: 4s. Last read position: chr6:32,848,672
INFO 2026-06-02 22:48:20 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:38:29s. Time for last 1,000,000: 9s. Last read position: chr6:33,201,178
INFO 2026-06-02 22:48:25 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:38:34s. Time for last 1,000,000: 5s. Last read position: chr6:33,414,254
INFO 2026-06-02 22:48:33 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:38:42s. Time for last 1,000,000: 7s. Last read position: chr6:35,017,842
INFO 2026-06-02 22:48:39 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:38:48s. Time for last 1,000,000: 5s. Last read position: chr6:37,929,971
INFO 2026-06-02 22:48:47 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:38:56s. Time for last 1,000,000: 7s. Last read position: chr6:43,171,887
INFO 2026-06-02 22:48:55 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:39:04s. Time for last 1,000,000: 8s. Last read position: chr6:44,259,223
INFO 2026-06-02 22:49:10 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:39:19s. Time for last 1,000,000: 14s. Last read position: chr6:56,562,170
INFO 2026-06-02 22:49:38 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:39:48s. Time for last 1,000,000: 28s. Last read position: chr6:75,647,730
INFO 2026-06-02 22:49:52 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:40:02s. Time for last 1,000,000: 14s. Last read position: chr6:87,675,534
INFO 2026-06-02 22:50:03 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:40:13s. Time for last 1,000,000: 11s. Last read position: chr6:106,098,974
INFO 2026-06-02 22:50:11 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:40:21s. Time for last 1,000,000: 7s. Last read position: chr6:111,367,255
INFO 2026-06-02 22:50:20 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:40:29s. Time for last 1,000,000: 8s. Last read position: chr6:127,325,693
INFO 2026-06-02 22:50:46 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:40:56s. Time for last 1,000,000: 26s. Last read position: chr6:136,275,870
INFO 2026-06-02 22:50:54 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:41:03s. Time for last 1,000,000: 7s. Last read position: chr6:143,774,097
INFO 2026-06-02 22:51:03 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:41:13s. Time for last 1,000,000: 9s. Last read position: chr6:152,219,119
INFO 2026-06-02 22:51:20 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:41:29s. Time for last 1,000,000: 16s. Last read position: chr6:158,769,352
INFO 2026-06-02 22:51:25 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:41:35s. Time for last 1,000,000: 5s. Last read position: chr6:159,779,932
INFO 2026-06-02 22:51:42 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:41:52s. Time for last 1,000,000: 16s. Last read position: chr6:169,702,710
INFO 2026-06-02 22:51:51 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:42:00s. Time for last 1,000,000: 8s. Last read position: chr7:2,355,157
INFO 2026-06-02 22:51:58 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:42:08s. Time for last 1,000,000: 7s. Last read position: chr7:5,387,992
INFO 2026-06-02 22:52:07 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:42:16s. Time for last 1,000,000: 8s. Last read position: chr7:5,528,530
INFO 2026-06-02 22:52:16 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:42:26s. Time for last 1,000,000: 9s. Last read position: chr7:6,402,330
INFO 2026-06-02 22:52:23 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:42:33s. Time for last 1,000,000: 7s. Last read position: chr7:16,797,631
INFO 2026-06-02 22:52:32 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:42:42s. Time for last 1,000,000: 8s. Last read position: chr7:26,185,557
INFO 2026-06-02 22:53:02 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:43:11s. Time for last 1,000,000: 29s. Last read position: chr7:32,559,291
INFO 2026-06-02 22:53:10 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:43:19s. Time for last 1,000,000: 7s. Last read position: chr7:44,062,740
INFO 2026-06-02 22:53:19 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:43:28s. Time for last 1,000,000: 9s. Last read position: chr7:47,291,991
INFO 2026-06-02 22:53:28 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:43:38s. Time for last 1,000,000: 9s. Last read position: chr7:64,669,064
INFO 2026-06-02 22:53:34 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:43:43s. Time for last 1,000,000: 5s. Last read position: chr7:73,205,387
INFO 2026-06-02 22:53:41 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:43:50s. Time for last 1,000,000: 6s. Last read position: chr7:74,736,593
INFO 2026-06-02 22:53:45 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:43:55s. Time for last 1,000,000: 4s. Last read position: chr7:76,048,170
INFO 2026-06-02 22:53:52 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:44:01s. Time for last 1,000,000: 6s. Last read position: chr7:87,516,590
INFO 2026-06-02 22:54:44 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:44:53s. Time for last 1,000,000: 52s. Last read position: chr7:93,105,375
INFO 2026-06-02 22:54:57 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:45:06s. Time for last 1,000,000: 12s. Last read position: chr7:98,192,533
INFO 2026-06-02 22:55:13 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:45:22s. Time for last 1,000,000: 16s. Last read position: chr7:99,892,309
INFO 2026-06-02 22:55:21 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:45:31s. Time for last 1,000,000: 8s. Last read position: chr7:100,678,230
INFO 2026-06-02 22:55:27 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:45:37s. Time for last 1,000,000: 6s. Last read position: chr7:100,997,906
INFO 2026-06-02 22:55:33 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:45:43s. Time for last 1,000,000: 5s. Last read position: chr7:102,474,358
INFO 2026-06-02 22:55:39 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:45:49s. Time for last 1,000,000: 6s. Last read position: chr7:105,111,976
INFO 2026-06-02 22:56:02 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:46:12s. Time for last 1,000,000: 22s. Last read position: chr7:116,699,504
INFO 2026-06-02 22:56:11 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:46:20s. Time for last 1,000,000: 8s. Last read position: chr7:127,703,305
INFO 2026-06-02 22:56:19 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:46:29s. Time for last 1,000,000: 8s. Last read position: chr7:129,001,081
INFO 2026-06-02 22:56:27 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:46:36s. Time for last 1,000,000: 7s. Last read position: chr7:138,001,804
INFO 2026-06-02 22:56:33 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:46:43s. Time for last 1,000,000: 6s. Last read position: chr7:140,753,274
INFO 2026-06-02 22:56:42 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:46:51s. Time for last 1,000,000: 8s. Last read position: chr7:144,269,044
INFO 2026-06-02 22:56:48 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:46:57s. Time for last 1,000,000: 6s. Last read position: chr7:150,572,552
INFO 2026-06-02 22:56:59 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:47:09s. Time for last 1,000,000: 11s. Last read position: chr7:152,176,502
INFO 2026-06-02 22:57:18 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:47:27s. Time for last 1,000,000: 18s. Last read position: chr8:6,730,744
INFO 2026-06-02 22:57:40 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:47:50s. Time for last 1,000,000: 22s. Last read position: chr8:17,646,056
INFO 2026-06-02 22:57:54 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:48:04s. Time for last 1,000,000: 14s. Last read position: chr8:22,608,047
INFO 2026-06-02 22:58:04 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:48:13s. Time for last 1,000,000: 9s. Last read position: chr8:27,822,466
INFO 2026-06-02 22:58:10 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:48:19s. Time for last 1,000,000: 5s. Last read position: chr8:37,872,679
INFO 2026-06-02 22:58:26 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:48:36s. Time for last 1,000,000: 16s. Last read position: chr8:39,077,401
INFO 2026-06-02 22:58:39 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:48:49s. Time for last 1,000,000: 12s. Last read position: chr8:47,836,458
INFO 2026-06-02 22:58:52 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:49:01s. Time for last 1,000,000: 12s. Last read position: chr8:58,570,949
INFO 2026-06-02 22:59:08 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:49:17s. Time for last 1,000,000: 15s. Last read position: chr8:67,228,121
INFO 2026-06-02 22:59:15 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:49:25s. Time for last 1,000,000: 7s. Last read position: chr8:80,171,425
INFO 2026-06-02 22:59:23 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:49:33s. Time for last 1,000,000: 7s. Last read position: chr8:97,644,620
INFO 2026-06-02 22:59:46 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:49:55s. Time for last 1,000,000: 22s. Last read position: chr8:100,717,783
INFO 2026-06-02 23:00:10 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:50:20s. Time for last 1,000,000: 24s. Last read position: chr8:108,239,985
INFO 2026-06-02 23:00:19 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:50:29s. Time for last 1,000,000: 9s. Last read position: chr8:124,522,151
INFO 2026-06-02 23:00:27 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:50:36s. Time for last 1,000,000: 7s. Last read position: chr8:131,955,766
INFO 2026-06-02 23:00:40 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:50:49s. Time for last 1,000,000: 13s. Last read position: chr8:143,574,790
INFO 2026-06-02 23:00:53 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:51:03s. Time for last 1,000,000: 13s. Last read position: chr8:143,858,088
INFO 2026-06-02 23:00:54 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:51:04s. Time for last 1,000,000: 0s. Last read position: chr8:143,860,024
INFO 2026-06-02 23:00:55 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:51:04s. Time for last 1,000,000: 0s. Last read position: chr8:143,862,173
INFO 2026-06-02 23:00:56 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:51:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,577
INFO 2026-06-02 23:00:57 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:51:06s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,408
INFO 2026-06-02 23:01:00 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:51:10s. Time for last 1,000,000: 3s. Last read position: chr8:143,921,319
INFO 2026-06-02 23:01:15 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:51:24s. Time for last 1,000,000: 14s. Last read position: chr8:144,096,219
INFO 2026-06-02 23:01:25 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:51:34s. Time for last 1,000,000: 9s. Last read position: chr8:144,512,183
INFO 2026-06-02 23:01:39 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:51:48s. Time for last 1,000,000: 14s. Last read position: chr9:5,055,761
INFO 2026-06-02 23:01:49 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:51:58s. Time for last 1,000,000: 9s. Last read position: chr9:19,089,430
INFO 2026-06-02 23:01:57 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:52:06s. Time for last 1,000,000: 7s. Last read position: chr9:33,029,883
INFO 2026-06-02 23:02:02 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:52:12s. Time for last 1,000,000: 5s. Last read position: chr9:34,089,545
INFO 2026-06-02 23:02:16 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:52:25s. Time for last 1,000,000: 13s. Last read position: chr9:35,660,913
INFO 2026-06-02 23:02:24 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:52:33s. Time for last 1,000,000: 7s. Last read position: chr9:37,126,877
INFO 2026-06-02 23:02:34 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:52:44s. Time for last 1,000,000: 10s. Last read position: chr9:69,252,878
INFO 2026-06-02 23:02:46 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:52:55s. Time for last 1,000,000: 11s. Last read position: chr9:83,000,189
INFO 2026-06-02 23:02:56 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:53:06s. Time for last 1,000,000: 10s. Last read position: chr9:88,410,902
INFO 2026-06-02 23:03:07 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:53:16s. Time for last 1,000,000: 10s. Last read position: chr9:93,253,070
INFO 2026-06-02 23:03:16 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:53:25s. Time for last 1,000,000: 9s. Last read position: chr9:95,972,107
INFO 2026-06-02 23:03:21 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:53:30s. Time for last 1,000,000: 5s. Last read position: chr9:99,951,259
INFO 2026-06-02 23:03:27 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:53:36s. Time for last 1,000,000: 5s. Last read position: chr9:107,487,888
INFO 2026-06-02 23:03:44 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:53:54s. Time for last 1,000,000: 17s. Last read position: chr9:112,268,143
INFO 2026-06-02 23:03:53 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:54:02s. Time for last 1,000,000: 8s. Last read position: chr9:114,790,209
INFO 2026-06-02 23:04:07 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:54:16s. Time for last 1,000,000: 13s. Last read position: chr9:121,766,626
INFO 2026-06-02 23:04:14 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:54:23s. Time for last 1,000,000: 6s. Last read position: chr9:125,236,927
INFO 2026-06-02 23:04:24 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:54:34s. Time for last 1,000,000: 10s. Last read position: chr9:127,665,310
INFO 2026-06-02 23:04:37 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:54:46s. Time for last 1,000,000: 12s. Last read position: chr9:128,309,467
INFO 2026-06-02 23:04:57 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:55:07s. Time for last 1,000,000: 20s. Last read position: chr9:128,693,975
INFO 2026-06-02 23:05:05 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:55:14s. Time for last 1,000,000: 7s. Last read position: chr9:129,908,915
INFO 2026-06-02 23:05:15 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:55:24s. Time for last 1,000,000: 9s. Last read position: chr9:130,714,396
INFO 2026-06-02 23:05:24 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:55:34s. Time for last 1,000,000: 9s. Last read position: chr9:131,626,393
INFO 2026-06-02 23:05:32 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:55:42s. Time for last 1,000,000: 7s. Last read position: chr9:133,363,416
INFO 2026-06-02 23:05:39 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:55:49s. Time for last 1,000,000: 6s. Last read position: chr9:135,862,575
INFO 2026-06-02 23:05:53 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:56:03s. Time for last 1,000,000: 14s. Last read position: chr9:136,476,936
INFO 2026-06-02 23:06:06 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:56:16s. Time for last 1,000,000: 12s. Last read position: chr9:136,942,181
INFO 2026-06-02 23:06:14 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:56:23s. Time for last 1,000,000: 7s. Last read position: chr9:137,242,898
INFO 2026-06-02 23:06:22 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:56:31s. Time for last 1,000,000: 8s. Last read position: chr10:884,464
INFO 2026-06-02 23:06:37 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:56:46s. Time for last 1,000,000: 14s. Last read position: chr10:6,232,952
INFO 2026-06-02 23:06:44 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:56:53s. Time for last 1,000,000: 7s. Last read position: chr10:18,539,756
INFO 2026-06-02 23:06:59 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:57:09s. Time for last 1,000,000: 15s. Last read position: chr10:29,523,521
INFO 2026-06-02 23:07:06 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:57:15s. Time for last 1,000,000: 6s. Last read position: chr10:32,911,918
INFO 2026-06-02 23:07:18 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:57:28s. Time for last 1,000,000: 12s. Last read position: chr10:45,834,044
INFO 2026-06-02 23:07:24 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:57:34s. Time for last 1,000,000: 6s. Last read position: chr10:51,698,152
INFO 2026-06-02 23:07:32 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:57:42s. Time for last 1,000,000: 8s. Last read position: chr10:68,982,708
INFO 2026-06-02 23:07:40 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:57:50s. Time for last 1,000,000: 7s. Last read position: chr10:73,134,602
INFO 2026-06-02 23:07:57 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:58:07s. Time for last 1,000,000: 17s. Last read position: chr10:77,819,378
INFO 2026-06-02 23:08:05 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:58:14s. Time for last 1,000,000: 7s. Last read position: chr10:84,371,607
INFO 2026-06-02 23:08:10 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:58:20s. Time for last 1,000,000: 5s. Last read position: chr10:90,896,367
INFO 2026-06-02 23:08:25 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:58:34s. Time for last 1,000,000: 14s. Last read position: chr10:95,627,360
INFO 2026-06-02 23:08:37 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:58:46s. Time for last 1,000,000: 12s. Last read position: chr10:97,662,912
INFO 2026-06-02 23:08:44 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:58:53s. Time for last 1,000,000: 6s. Last read position: chr10:102,033,122
INFO 2026-06-02 23:09:09 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:59:19s. Time for last 1,000,000: 25s. Last read position: chr10:103,444,649
INFO 2026-06-02 23:09:19 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:59:28s. Time for last 1,000,000: 9s. Last read position: chr10:113,165,817
INFO 2026-06-02 23:09:26 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:59:35s. Time for last 1,000,000: 7s. Last read position: chr10:119,169,193
INFO 2026-06-02 23:09:36 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:59:46s. Time for last 1,000,000: 10s. Last read position: chr10:125,721,271
INFO 2026-06-02 23:09:41 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:59:51s. Time for last 1,000,000: 4s. Last read position: chr10:131,955,690
INFO 2026-06-02 23:09:49 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:59:58s. Time for last 1,000,000: 7s. Last read position: chr11:319,758
INFO 2026-06-02 23:09:57 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:00:07s. Time for last 1,000,000: 8s. Last read position: chr11:615,005
INFO 2026-06-02 23:10:06 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:00:16s. Time for last 1,000,000: 9s. Last read position: chr11:1,093,024
INFO 2026-06-02 23:10:10 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:00:20s. Time for last 1,000,000: 3s. Last read position: chr11:1,182,996
INFO 2026-06-02 23:10:14 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:00:23s. Time for last 1,000,000: 3s. Last read position: chr11:1,184,645
INFO 2026-06-02 23:10:17 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:00:27s. Time for last 1,000,000: 3s. Last read position: chr11:1,186,224
INFO 2026-06-02 23:10:22 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:00:31s. Time for last 1,000,000: 4s. Last read position: chr11:1,188,287
INFO 2026-06-02 23:10:26 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:00:35s. Time for last 1,000,000: 4s. Last read position: chr11:1,190,525
INFO 2026-06-02 23:10:30 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:00:39s. Time for last 1,000,000: 3s. Last read position: chr11:1,191,795
INFO 2026-06-02 23:10:37 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:00:46s. Time for last 1,000,000: 6s. Last read position: chr11:1,225,687
INFO 2026-06-02 23:10:42 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:00:51s. Time for last 1,000,000: 5s. Last read position: chr11:1,236,975
INFO 2026-06-02 23:10:51 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:01:01s. Time for last 1,000,000: 9s. Last read position: chr11:1,242,699
INFO 2026-06-02 23:10:56 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:01:05s. Time for last 1,000,000: 4s. Last read position: chr11:1,243,230
INFO 2026-06-02 23:11:01 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:01:10s. Time for last 1,000,000: 4s. Last read position: chr11:1,243,698
INFO 2026-06-02 23:11:05 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:01:14s. Time for last 1,000,000: 4s. Last read position: chr11:1,244,323
INFO 2026-06-02 23:11:10 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:01:20s. Time for last 1,000,000: 5s. Last read position: chr11:1,244,846
INFO 2026-06-02 23:11:12 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:01:21s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,163
INFO 2026-06-02 23:11:15 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:01:24s. Time for last 1,000,000: 3s. Last read position: chr11:1,245,808
INFO 2026-06-02 23:11:21 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:01:31s. Time for last 1,000,000: 6s. Last read position: chr11:1,246,907
INFO 2026-06-02 23:11:27 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:01:36s. Time for last 1,000,000: 5s. Last read position: chr11:1,247,545
INFO 2026-06-02 23:11:29 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:01:38s. Time for last 1,000,000: 2s. Last read position: chr11:1,248,218
INFO 2026-06-02 23:11:35 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:01:45s. Time for last 1,000,000: 6s. Last read position: chr11:1,248,815
INFO 2026-06-02 23:11:43 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:01:52s. Time for last 1,000,000: 7s. Last read position: chr11:1,249,161
INFO 2026-06-02 23:11:50 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:01:59s. Time for last 1,000,000: 7s. Last read position: chr11:1,250,091
INFO 2026-06-02 23:11:56 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:02:06s. Time for last 1,000,000: 6s. Last read position: chr11:1,250,722
INFO 2026-06-02 23:12:05 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:02:14s. Time for last 1,000,000: 8s. Last read position: chr11:1,254,770
INFO 2026-06-02 23:12:16 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:02:26s. Time for last 1,000,000: 11s. Last read position: chr11:1,761,332
INFO 2026-06-02 23:12:28 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:02:38s. Time for last 1,000,000: 11s. Last read position: chr11:4,112,050
INFO 2026-06-02 23:12:38 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:02:47s. Time for last 1,000,000: 9s. Last read position: chr11:8,712,583
INFO 2026-06-02 23:12:54 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:03:03s. Time for last 1,000,000: 15s. Last read position: chr11:12,224,758
INFO 2026-06-02 23:13:03 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:03:12s. Time for last 1,000,000: 9s. Last read position: chr11:18,335,797
INFO 2026-06-02 23:13:11 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:03:20s. Time for last 1,000,000: 7s. Last read position: chr11:33,287,229
INFO 2026-06-02 23:13:22 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:03:31s. Time for last 1,000,000: 11s. Last read position: chr11:43,680,852
INFO 2026-06-02 23:13:32 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:03:41s. Time for last 1,000,000: 10s. Last read position: chr11:46,382,357
INFO 2026-06-02 23:13:45 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:03:55s. Time for last 1,000,000: 13s. Last read position: chr11:47,584,362
INFO 2026-06-02 23:13:52 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:04:02s. Time for last 1,000,000: 7s. Last read position: chr11:57,712,092
INFO 2026-06-02 23:14:06 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:04:15s. Time for last 1,000,000: 13s. Last read position: chr11:60,903,489
INFO 2026-06-02 23:14:21 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:04:31s. Time for last 1,000,000: 15s. Last read position: chr11:62,130,472
INFO 2026-06-02 23:14:25 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:04:35s. Time for last 1,000,000: 3s. Last read position: chr11:62,529,362
INFO 2026-06-02 23:14:32 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:04:41s. Time for last 1,000,000: 6s. Last read position: chr11:62,663,094
INFO 2026-06-02 23:14:47 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:04:56s. Time for last 1,000,000: 15s. Last read position: chr11:63,908,273
INFO 2026-06-02 23:14:54 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:05:03s. Time for last 1,000,000: 7s. Last read position: chr11:64,765,452
INFO 2026-06-02 23:15:02 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:05:12s. Time for last 1,000,000: 8s. Last read position: chr11:65,130,101
INFO 2026-06-02 23:15:12 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:05:21s. Time for last 1,000,000: 9s. Last read position: chr11:65,641,441
INFO 2026-06-02 23:15:21 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:05:31s. Time for last 1,000,000: 9s. Last read position: chr11:66,233,025
INFO 2026-06-02 23:15:31 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:05:41s. Time for last 1,000,000: 10s. Last read position: chr11:67,279,861
INFO 2026-06-02 23:15:40 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:05:49s. Time for last 1,000,000: 8s. Last read position: chr11:68,042,644
INFO 2026-06-02 23:15:48 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:05:58s. Time for last 1,000,000: 8s. Last read position: chr11:69,643,092
INFO 2026-06-02 23:16:02 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:06:12s. Time for last 1,000,000: 13s. Last read position: chr11:72,237,606
INFO 2026-06-02 23:16:21 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:06:31s. Time for last 1,000,000: 18s. Last read position: chr11:75,400,751
INFO 2026-06-02 23:16:34 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:06:43s. Time for last 1,000,000: 12s. Last read position: chr11:83,169,193
INFO 2026-06-02 23:16:47 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:06:56s. Time for last 1,000,000: 13s. Last read position: chr11:96,341,597
INFO 2026-06-02 23:16:55 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:07:04s. Time for last 1,000,000: 8s. Last read position: chr11:108,302,968
INFO 2026-06-02 23:17:07 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:07:16s. Time for last 1,000,000: 11s. Last read position: chr11:117,842,725
INFO 2026-06-02 23:17:15 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:07:25s. Time for last 1,000,000: 8s. Last read position: chr11:118,908,488
INFO 2026-06-02 23:17:28 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:07:37s. Time for last 1,000,000: 12s. Last read position: chr11:121,577,354
INFO 2026-06-02 23:17:38 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:07:48s. Time for last 1,000,000: 10s. Last read position: chr11:123,061,126
INFO 2026-06-02 23:17:48 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:07:57s. Time for last 1,000,000: 9s. Last read position: chr11:128,971,037
INFO 2026-06-02 23:17:56 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:08:05s. Time for last 1,000,000: 7s. Last read position: chr12:753,455
INFO 2026-06-02 23:18:10 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:08:19s. Time for last 1,000,000: 14s. Last read position: chr12:4,657,779
INFO 2026-06-02 23:18:19 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:08:29s. Time for last 1,000,000: 9s. Last read position: chr12:6,557,238
INFO 2026-06-02 23:18:47 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:08:56s. Time for last 1,000,000: 27s. Last read position: chr12:6,957,928
INFO 2026-06-02 23:18:56 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:09:05s. Time for last 1,000,000: 9s. Last read position: chr12:9,113,510
INFO 2026-06-02 23:19:01 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:09:10s. Time for last 1,000,000: 4s. Last read position: chr12:12,909,141
INFO 2026-06-02 23:19:09 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:09:19s. Time for last 1,000,000: 8s. Last read position: chr12:22,644,225
INFO 2026-06-02 23:19:20 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:09:29s. Time for last 1,000,000: 10s. Last read position: chr12:32,802,461
INFO 2026-06-02 23:19:33 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:09:42s. Time for last 1,000,000: 12s. Last read position: chr12:48,083,729
INFO 2026-06-02 23:19:41 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:09:51s. Time for last 1,000,000: 8s. Last read position: chr12:49,053,586
INFO 2026-06-02 23:19:46 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:09:55s. Time for last 1,000,000: 4s. Last read position: chr12:49,272,618
INFO 2026-06-02 23:19:57 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:10:06s. Time for last 1,000,000: 11s. Last read position: chr12:51,240,371
INFO 2026-06-02 23:20:04 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:10:14s. Time for last 1,000,000: 7s. Last read position: chr12:52,904,763
INFO 2026-06-02 23:20:14 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:10:24s. Time for last 1,000,000: 9s. Last read position: chr12:53,059,324
INFO 2026-06-02 23:20:27 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:10:37s. Time for last 1,000,000: 12s. Last read position: chr12:53,665,351
INFO 2026-06-02 23:20:52 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:11:02s. Time for last 1,000,000: 25s. Last read position: chr12:54,343,289
INFO 2026-06-02 23:21:02 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:11:12s. Time for last 1,000,000: 9s. Last read position: chr12:56,155,130
INFO 2026-06-02 23:21:16 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:11:26s. Time for last 1,000,000: 14s. Last read position: chr12:56,612,089
INFO 2026-06-02 23:21:29 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:11:38s. Time for last 1,000,000: 12s. Last read position: chr12:57,091,806
INFO 2026-06-02 23:21:46 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:11:56s. Time for last 1,000,000: 17s. Last read position: chr12:57,300,129
INFO 2026-06-02 23:22:00 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:12:10s. Time for last 1,000,000: 14s. Last read position: chr12:62,524,609
INFO 2026-06-02 23:22:11 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:12:21s. Time for last 1,000,000: 11s. Last read position: chr12:69,258,841
INFO 2026-06-02 23:22:18 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:12:28s. Time for last 1,000,000: 6s. Last read position: chr12:76,030,791
INFO 2026-06-02 23:22:30 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:12:40s. Time for last 1,000,000: 11s. Last read position: chr12:94,149,568
INFO 2026-06-02 23:22:39 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:12:49s. Time for last 1,000,000: 9s. Last read position: chr12:101,402,865
INFO 2026-06-02 23:23:07 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:13:16s. Time for last 1,000,000: 27s. Last read position: chr12:104,313,251
INFO 2026-06-02 23:23:16 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:13:25s. Time for last 1,000,000: 8s. Last read position: chr12:109,904,114
INFO 2026-06-02 23:23:29 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:13:38s. Time for last 1,000,000: 12s. Last read position: chr12:112,022,337
INFO 2026-06-02 23:23:49 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:13:59s. Time for last 1,000,000: 20s. Last read position: chr12:112,970,046
INFO 2026-06-02 23:24:04 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:14:13s. Time for last 1,000,000: 14s. Last read position: chr12:120,072,716
INFO 2026-06-02 23:24:12 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:14:22s. Time for last 1,000,000: 8s. Last read position: chr12:120,999,537
INFO 2026-06-02 23:24:23 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:14:32s. Time for last 1,000,000: 10s. Last read position: chr12:122,577,679
INFO 2026-06-02 23:24:33 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:14:43s. Time for last 1,000,000: 10s. Last read position: chr12:124,350,605
INFO 2026-06-02 23:24:44 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:14:54s. Time for last 1,000,000: 10s. Last read position: chr12:132,053,568
INFO 2026-06-02 23:24:54 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:15:03s. Time for last 1,000,000: 9s. Last read position: chr13:19,993,131
INFO 2026-06-02 23:25:00 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:15:09s. Time for last 1,000,000: 6s. Last read position: chr13:25,315,442
INFO 2026-06-02 23:25:08 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:15:17s. Time for last 1,000,000: 8s. Last read position: chr13:32,683,922
INFO 2026-06-02 23:25:15 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:15:25s. Time for last 1,000,000: 7s. Last read position: chr13:44,434,768
INFO 2026-06-02 23:25:24 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:15:34s. Time for last 1,000,000: 8s. Last read position: chr13:49,495,982
INFO 2026-06-02 23:25:34 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:15:43s. Time for last 1,000,000: 9s. Last read position: chr13:75,823,679
INFO 2026-06-02 23:25:51 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:16:00s. Time for last 1,000,000: 16s. Last read position: chr13:98,015,760
INFO 2026-06-02 23:26:04 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:16:14s. Time for last 1,000,000: 13s. Last read position: chr13:110,176,448
INFO 2026-06-02 23:26:18 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:16:27s. Time for last 1,000,000: 13s. Last read position: chr13:113,325,529
INFO 2026-06-02 23:26:29 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:16:39s. Time for last 1,000,000: 11s. Last read position: chr14:21,233,984
INFO 2026-06-02 23:26:41 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:16:50s. Time for last 1,000,000: 11s. Last read position: chr14:23,058,978
INFO 2026-06-02 23:26:52 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:17:01s. Time for last 1,000,000: 10s. Last read position: chr14:24,146,215
INFO 2026-06-02 23:27:10 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:17:19s. Time for last 1,000,000: 18s. Last read position: chr14:31,128,652
INFO 2026-06-02 23:27:22 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:17:32s. Time for last 1,000,000: 12s. Last read position: chr14:39,348,786
INFO 2026-06-02 23:27:29 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 01:17:39s. Time for last 1,000,000: 6s. Last read position: chr14:52,683,806
INFO 2026-06-02 23:27:43 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 01:17:53s. Time for last 1,000,000: 14s. Last read position: chr14:58,487,972
INFO 2026-06-02 23:28:35 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 01:18:44s. Time for last 1,000,000: 51s. Last read position: chr14:64,225,324
INFO 2026-06-02 23:28:49 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 01:18:59s. Time for last 1,000,000: 14s. Last read position: chr14:67,802,178
INFO 2026-06-02 23:29:01 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 01:19:10s. Time for last 1,000,000: 11s. Last read position: chr14:73,198,040
INFO 2026-06-02 23:29:10 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 01:19:20s. Time for last 1,000,000: 9s. Last read position: chr14:75,745,570
INFO 2026-06-02 23:29:19 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 01:19:29s. Time for last 1,000,000: 9s. Last read position: chr14:91,170,075
INFO 2026-06-02 23:29:28 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 01:19:37s. Time for last 1,000,000: 8s. Last read position: chr14:94,111,680
INFO 2026-06-02 23:29:40 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 01:19:50s. Time for last 1,000,000: 12s. Last read position: chr14:100,337,085
INFO 2026-06-02 23:30:12 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 01:20:21s. Time for last 1,000,000: 31s. Last read position: chr14:102,000,947
INFO 2026-06-02 23:32:33 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 01:22:43s. Time for last 1,000,000: 141s. Last read position: chr14:102,086,024
INFO 2026-06-02 23:32:52 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 01:23:02s. Time for last 1,000,000: 19s. Last read position: chr14:104,707,688
INFO 2026-06-02 23:33:13 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 01:23:22s. Time for last 1,000,000: 20s. Last read position: chr14:105,469,849
INFO 2026-06-02 23:33:14 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 01:23:24s. Time for last 1,000,000: 1s. Last read position: chr14:105,625,894
INFO 2026-06-02 23:33:16 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 01:23:25s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,425
INFO 2026-06-02 23:33:18 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 01:23:27s. Time for last 1,000,000: 1s. Last read position: chr14:105,668,256
INFO 2026-06-02 23:33:20 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 01:23:29s. Time for last 1,000,000: 2s. Last read position: chr14:105,741,472
INFO 2026-06-02 23:33:21 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 01:23:30s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,583
INFO 2026-06-02 23:33:23 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 01:23:32s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,698
INFO 2026-06-02 23:33:24 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 01:23:34s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,991
INFO 2026-06-02 23:33:26 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 01:23:35s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,170
INFO 2026-06-02 23:33:27 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 01:23:37s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,837
INFO 2026-06-02 23:33:29 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 01:23:38s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,967
INFO 2026-06-02 23:33:30 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 01:23:40s. Time for last 1,000,000: 1s. Last read position: chr14:105,769,966
INFO 2026-06-02 23:33:31 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 01:23:41s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,353
INFO 2026-06-02 23:33:34 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 01:23:43s. Time for last 1,000,000: 2s. Last read position: chr15:22,866,224
INFO 2026-06-02 23:34:10 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 01:24:19s. Time for last 1,000,000: 36s. Last read position: chr15:31,372,241
INFO 2026-06-02 23:34:16 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 01:24:26s. Time for last 1,000,000: 6s. Last read position: chr15:36,618,949
INFO 2026-06-02 23:34:24 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 01:24:34s. Time for last 1,000,000: 7s. Last read position: chr15:41,087,628
INFO 2026-06-02 23:34:35 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 01:24:44s. Time for last 1,000,000: 10s. Last read position: chr15:43,189,221
INFO 2026-06-02 23:34:42 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 01:24:52s. Time for last 1,000,000: 7s. Last read position: chr15:43,793,780
INFO 2026-06-02 23:34:52 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 01:25:01s. Time for last 1,000,000: 9s. Last read position: chr15:49,134,009
INFO 2026-06-02 23:35:04 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 01:25:13s. Time for last 1,000,000: 11s. Last read position: chr15:55,915,841
INFO 2026-06-02 23:35:18 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 01:25:27s. Time for last 1,000,000: 13s. Last read position: chr15:60,357,222
INFO 2026-06-02 23:35:42 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 01:25:51s. Time for last 1,000,000: 24s. Last read position: chr15:64,156,105
INFO 2026-06-02 23:35:49 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 01:25:58s. Time for last 1,000,000: 6s. Last read position: chr15:66,500,312
INFO 2026-06-02 23:35:59 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 01:26:09s. Time for last 1,000,000: 10s. Last read position: chr15:72,045,874
INFO 2026-06-02 23:36:10 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 01:26:20s. Time for last 1,000,000: 10s. Last read position: chr15:74,033,208
INFO 2026-06-02 23:36:22 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 01:26:32s. Time for last 1,000,000: 12s. Last read position: chr15:75,206,971
INFO 2026-06-02 23:36:33 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 01:26:42s. Time for last 1,000,000: 10s. Last read position: chr15:78,493,919
INFO 2026-06-02 23:36:43 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 01:26:52s. Time for last 1,000,000: 10s. Last read position: chr15:84,645,516
INFO 2026-06-02 23:36:56 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 01:27:05s. Time for last 1,000,000: 12s. Last read position: chr15:89,908,285
INFO 2026-06-02 23:37:06 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 01:27:16s. Time for last 1,000,000: 10s. Last read position: chr15:92,946,103
INFO 2026-06-02 23:37:16 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 01:27:25s. Time for last 1,000,000: 9s. Last read position: chr16:426,399
INFO 2026-06-02 23:37:30 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 01:27:39s. Time for last 1,000,000: 13s. Last read position: chr16:910,923
INFO 2026-06-02 23:37:38 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 01:27:48s. Time for last 1,000,000: 8s. Last read position: chr16:2,000,069
INFO 2026-06-02 23:38:05 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 01:28:14s. Time for last 1,000,000: 26s. Last read position: chr16:2,519,636
INFO 2026-06-02 23:38:17 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 01:28:27s. Time for last 1,000,000: 12s. Last read position: chr16:2,769,002
INFO 2026-06-02 23:38:30 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 01:28:40s. Time for last 1,000,000: 12s. Last read position: chr16:3,592,749
INFO 2026-06-02 23:38:42 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 01:28:51s. Time for last 1,000,000: 11s. Last read position: chr16:8,801,872
INFO 2026-06-02 23:38:54 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 01:29:03s. Time for last 1,000,000: 11s. Last read position: chr16:11,873,063
INFO 2026-06-02 23:39:02 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 01:29:11s. Time for last 1,000,000: 7s. Last read position: chr16:14,945,583
INFO 2026-06-02 23:39:17 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 01:29:26s. Time for last 1,000,000: 15s. Last read position: chr16:16,285,454
INFO 2026-06-02 23:39:19 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 01:29:29s. Time for last 1,000,000: 2s. Last read position: chr16:18,350,655
INFO 2026-06-02 23:39:25 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 01:29:35s. Time for last 1,000,000: 5s. Last read position: chr16:18,815,226
INFO 2026-06-02 23:39:34 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 01:29:44s. Time for last 1,000,000: 9s. Last read position: chr16:21,405,031
INFO 2026-06-02 23:39:38 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 01:29:47s. Time for last 1,000,000: 3s. Last read position: chr16:21,891,905
INFO 2026-06-02 23:39:43 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 01:29:52s. Time for last 1,000,000: 5s. Last read position: chr16:22,536,043
INFO 2026-06-02 23:39:51 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 01:30:00s. Time for last 1,000,000: 7s. Last read position: chr16:28,121,682
INFO 2026-06-02 23:40:03 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 01:30:13s. Time for last 1,000,000: 12s. Last read position: chr16:28,833,334
INFO 2026-06-02 23:40:11 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 01:30:21s. Time for last 1,000,000: 8s. Last read position: chr16:29,483,901
INFO 2026-06-02 23:40:17 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 01:30:26s. Time for last 1,000,000: 5s. Last read position: chr16:29,859,491
INFO 2026-06-02 23:40:27 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 01:30:37s. Time for last 1,000,000: 10s. Last read position: chr16:30,223,104
INFO 2026-06-02 23:40:32 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 01:30:41s. Time for last 1,000,000: 4s. Last read position: chr16:30,716,416
INFO 2026-06-02 23:40:40 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 01:30:49s. Time for last 1,000,000: 7s. Last read position: chr16:31,182,606
INFO 2026-06-02 23:40:49 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 01:30:58s. Time for last 1,000,000: 9s. Last read position: chr16:46,680,763
INFO 2026-06-02 23:40:58 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 01:31:08s. Time for last 1,000,000: 9s. Last read position: chr16:53,498,581
INFO 2026-06-02 23:41:11 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 01:31:21s. Time for last 1,000,000: 13s. Last read position: chr16:57,054,795
INFO 2026-06-02 23:41:32 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 01:31:42s. Time for last 1,000,000: 21s. Last read position: chr16:58,708,083
INFO 2026-06-02 23:41:42 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 01:31:51s. Time for last 1,000,000: 9s. Last read position: chr16:67,658,313
INFO 2026-06-02 23:41:52 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 01:32:01s. Time for last 1,000,000: 9s. Last read position: chr16:69,150,590
INFO 2026-06-02 23:42:08 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 01:32:17s. Time for last 1,000,000: 15s. Last read position: chr16:70,555,078
INFO 2026-06-02 23:42:17 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 01:32:26s. Time for last 1,000,000: 9s. Last read position: chr16:75,166,817
INFO 2026-06-02 23:42:25 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 01:32:34s. Time for last 1,000,000: 7s. Last read position: chr16:84,566,751
INFO 2026-06-02 23:42:31 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 01:32:40s. Time for last 1,000,000: 6s. Last read position: chr16:88,577,179
INFO 2026-06-02 23:42:39 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 01:32:48s. Time for last 1,000,000: 7s. Last read position: chr16:89,279,705
INFO 2026-06-02 23:42:57 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 01:33:06s. Time for last 1,000,000: 17s. Last read position: chr16:89,911,166
INFO 2026-06-02 23:43:10 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 01:33:19s. Time for last 1,000,000: 13s. Last read position: chr17:1,365,037
INFO 2026-06-02 23:43:21 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 01:33:30s. Time for last 1,000,000: 11s. Last read position: chr17:2,324,155
INFO 2026-06-02 23:43:31 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 01:33:41s. Time for last 1,000,000: 10s. Last read position: chr17:4,499,127
INFO 2026-06-02 23:43:41 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 01:33:50s. Time for last 1,000,000: 9s. Last read position: chr17:4,946,764
INFO 2026-06-02 23:43:50 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 01:33:59s. Time for last 1,000,000: 8s. Last read position: chr17:7,223,105
INFO 2026-06-02 23:44:00 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 01:34:09s. Time for last 1,000,000: 10s. Last read position: chr17:7,496,294
INFO 2026-06-02 23:44:11 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 01:34:21s. Time for last 1,000,000: 11s. Last read position: chr17:7,579,656
INFO 2026-06-02 23:44:21 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 01:34:31s. Time for last 1,000,000: 9s. Last read position: chr17:8,377,570
INFO 2026-06-02 23:44:36 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 01:34:46s. Time for last 1,000,000: 14s. Last read position: chr17:16,381,160
INFO 2026-06-02 23:44:45 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 01:34:54s. Time for last 1,000,000: 8s. Last read position: chr17:18,246,206
INFO 2026-06-02 23:44:57 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 01:35:06s. Time for last 1,000,000: 12s. Last read position: chr17:27,640,573
INFO 2026-06-02 23:45:07 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 01:35:17s. Time for last 1,000,000: 10s. Last read position: chr17:28,696,858
INFO 2026-06-02 23:45:19 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 01:35:28s. Time for last 1,000,000: 11s. Last read position: chr17:30,455,355
INFO 2026-06-02 23:45:33 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 01:35:43s. Time for last 1,000,000: 14s. Last read position: chr17:34,255,267
INFO 2026-06-02 23:45:43 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 01:35:52s. Time for last 1,000,000: 9s. Last read position: chr17:36,103,948
INFO 2026-06-02 23:45:52 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 01:36:02s. Time for last 1,000,000: 9s. Last read position: chr17:38,707,502
INFO 2026-06-02 23:45:58 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 01:36:08s. Time for last 1,000,000: 5s. Last read position: chr17:39,511,573
INFO 2026-06-02 23:46:13 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 01:36:22s. Time for last 1,000,000: 14s. Last read position: chr17:40,291,508
INFO 2026-06-02 23:46:19 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 01:36:28s. Time for last 1,000,000: 5s. Last read position: chr17:41,524,893
INFO 2026-06-02 23:46:28 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 01:36:37s. Time for last 1,000,000: 9s. Last read position: chr17:42,309,377
INFO 2026-06-02 23:46:48 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 01:36:57s. Time for last 1,000,000: 19s. Last read position: chr17:43,490,397
INFO 2026-06-02 23:46:59 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 01:37:08s. Time for last 1,000,000: 11s. Last read position: chr17:44,934,605
INFO 2026-06-02 23:47:08 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 01:37:17s. Time for last 1,000,000: 9s. Last read position: chr17:47,049,558
INFO 2026-06-02 23:47:20 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 01:37:30s. Time for last 1,000,000: 12s. Last read position: chr17:48,895,640
INFO 2026-06-02 23:47:26 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 01:37:36s. Time for last 1,000,000: 6s. Last read position: chr17:50,186,769
INFO 2026-06-02 23:47:32 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 01:37:41s. Time for last 1,000,000: 5s. Last read position: chr17:50,188,941
INFO 2026-06-02 23:47:38 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 01:37:47s. Time for last 1,000,000: 6s. Last read position: chr17:50,190,835
INFO 2026-06-02 23:47:46 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 01:37:56s. Time for last 1,000,000: 8s. Last read position: chr17:50,194,179
INFO 2026-06-02 23:47:57 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 01:38:06s. Time for last 1,000,000: 10s. Last read position: chr17:50,196,188
INFO 2026-06-02 23:48:10 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 01:38:19s. Time for last 1,000,000: 13s. Last read position: chr17:50,199,570
INFO 2026-06-02 23:48:21 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 01:38:31s. Time for last 1,000,000: 11s. Last read position: chr17:51,260,614
INFO 2026-06-02 23:48:30 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 01:38:39s. Time for last 1,000,000: 8s. Last read position: chr17:59,644,302
INFO 2026-06-02 23:48:43 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 01:38:53s. Time for last 1,000,000: 13s. Last read position: chr17:59,707,747
INFO 2026-06-02 23:48:53 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 01:39:03s. Time for last 1,000,000: 9s. Last read position: chr17:63,813,355
INFO 2026-06-02 23:49:05 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 01:39:14s. Time for last 1,000,000: 11s. Last read position: chr17:67,188,353
INFO 2026-06-02 23:49:19 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 01:39:28s. Time for last 1,000,000: 14s. Last read position: chr17:72,124,306
INFO 2026-06-02 23:49:27 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 01:39:37s. Time for last 1,000,000: 8s. Last read position: chr17:75,502,169
INFO 2026-06-02 23:49:51 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 01:40:01s. Time for last 1,000,000: 23s. Last read position: chr17:75,753,753
INFO 2026-06-02 23:50:04 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 01:40:14s. Time for last 1,000,000: 13s. Last read position: chr17:76,473,297
INFO 2026-06-02 23:50:16 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 01:40:26s. Time for last 1,000,000: 11s. Last read position: chr17:78,392,485
INFO 2026-06-02 23:50:24 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 01:40:33s. Time for last 1,000,000: 7s. Last read position: chr17:80,287,974
INFO 2026-06-02 23:50:41 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 01:40:50s. Time for last 1,000,000: 16s. Last read position: chr17:80,346,308
INFO 2026-06-02 23:51:06 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 01:41:15s. Time for last 1,000,000: 25s. Last read position: chr17:81,199,437
INFO 2026-06-02 23:51:25 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 01:41:34s. Time for last 1,000,000: 18s. Last read position: chr17:81,704,308
INFO 2026-06-02 23:51:58 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 01:42:07s. Time for last 1,000,000: 33s. Last read position: chr17:81,933,333
INFO 2026-06-02 23:52:09 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 01:42:19s. Time for last 1,000,000: 11s. Last read position: chr17:82,315,305
INFO 2026-06-02 23:52:20 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 01:42:29s. Time for last 1,000,000: 10s. Last read position: chr18:1,678,073
INFO 2026-06-02 23:52:28 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 01:42:38s. Time for last 1,000,000: 8s. Last read position: chr18:10,471,547
INFO 2026-06-02 23:52:40 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 01:42:49s. Time for last 1,000,000: 11s. Last read position: chr18:23,903,972
INFO 2026-06-02 23:52:52 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 01:43:01s. Time for last 1,000,000: 12s. Last read position: chr18:35,687,013
INFO 2026-06-02 23:53:02 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 01:43:12s. Time for last 1,000,000: 10s. Last read position: chr18:49,490,884
INFO 2026-06-02 23:53:15 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 01:43:25s. Time for last 1,000,000: 13s. Last read position: chr18:57,668,523
INFO 2026-06-02 23:53:33 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 01:43:42s. Time for last 1,000,000: 17s. Last read position: chr18:70,150,031
INFO 2026-06-02 23:53:42 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 01:43:51s. Time for last 1,000,000: 9s. Last read position: chr19:581,434
INFO 2026-06-02 23:53:53 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 01:44:02s. Time for last 1,000,000: 10s. Last read position: chr19:1,047,268
INFO 2026-06-02 23:54:04 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 01:44:13s. Time for last 1,000,000: 11s. Last read position: chr19:1,407,785
INFO 2026-06-02 23:54:12 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 01:44:21s. Time for last 1,000,000: 7s. Last read position: chr19:1,948,278
INFO 2026-06-02 23:54:19 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 01:44:28s. Time for last 1,000,000: 7s. Last read position: chr19:2,422,098
INFO 2026-06-02 23:54:26 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 01:44:35s. Time for last 1,000,000: 6s. Last read position: chr19:3,759,860
INFO 2026-06-02 23:54:32 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 01:44:41s. Time for last 1,000,000: 5s. Last read position: chr19:4,859,845
INFO 2026-06-02 23:54:40 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 01:44:49s. Time for last 1,000,000: 8s. Last read position: chr19:5,951,497
INFO 2026-06-02 23:54:49 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 01:44:58s. Time for last 1,000,000: 8s. Last read position: chr19:7,527,615
INFO 2026-06-02 23:54:58 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 01:45:08s. Time for last 1,000,000: 9s. Last read position: chr19:8,544,411
INFO 2026-06-02 23:55:26 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 01:45:35s. Time for last 1,000,000: 27s. Last read position: chr19:10,259,149
INFO 2026-06-02 23:55:37 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 01:45:47s. Time for last 1,000,000: 11s. Last read position: chr19:10,805,953
INFO 2026-06-02 23:56:09 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 01:46:19s. Time for last 1,000,000: 31s. Last read position: chr19:11,513,161
INFO 2026-06-02 23:56:18 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 01:46:27s. Time for last 1,000,000: 8s. Last read position: chr19:12,918,206
INFO 2026-06-02 23:56:25 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 01:46:34s. Time for last 1,000,000: 7s. Last read position: chr19:14,092,664
INFO 2026-06-02 23:56:34 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 01:46:44s. Time for last 1,000,000: 9s. Last read position: chr19:15,119,229
INFO 2026-06-02 23:56:44 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 01:46:53s. Time for last 1,000,000: 9s. Last read position: chr19:15,427,321
INFO 2026-06-02 23:56:55 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 01:47:05s. Time for last 1,000,000: 11s. Last read position: chr19:17,330,951
INFO 2026-06-02 23:57:01 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 01:47:11s. Time for last 1,000,000: 6s. Last read position: chr19:18,145,844
INFO 2026-06-02 23:57:07 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 01:47:17s. Time for last 1,000,000: 5s. Last read position: chr19:18,768,516
INFO 2026-06-02 23:57:16 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 01:47:25s. Time for last 1,000,000: 8s. Last read position: chr19:20,805,809
INFO 2026-06-02 23:57:23 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 01:47:32s. Time for last 1,000,000: 7s. Last read position: chr19:34,428,409
INFO 2026-06-02 23:57:33 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 01:47:43s. Time for last 1,000,000: 10s. Last read position: chr19:35,654,600
INFO 2026-06-02 23:57:45 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 01:47:54s. Time for last 1,000,000: 11s. Last read position: chr19:38,130,733
INFO 2026-06-02 23:57:53 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 01:48:03s. Time for last 1,000,000: 8s. Last read position: chr19:38,838,939
INFO 2026-06-02 23:58:01 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 01:48:11s. Time for last 1,000,000: 8s. Last read position: chr19:39,474,650
INFO 2026-06-02 23:58:05 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 01:48:14s. Time for last 1,000,000: 3s. Last read position: chr19:39,886,404
INFO 2026-06-02 23:58:09 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 01:48:18s. Time for last 1,000,000: 3s. Last read position: chr19:39,913,858
INFO 2026-06-02 23:58:18 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 01:48:28s. Time for last 1,000,000: 9s. Last read position: chr19:40,583,395
INFO 2026-06-02 23:58:31 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 01:48:40s. Time for last 1,000,000: 12s. Last read position: chr19:41,715,020
INFO 2026-06-02 23:58:37 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 01:48:46s. Time for last 1,000,000: 6s. Last read position: chr19:41,897,787
INFO 2026-06-02 23:58:47 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 01:48:56s. Time for last 1,000,000: 10s. Last read position: chr19:42,292,968
INFO 2026-06-02 23:58:54 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 01:49:03s. Time for last 1,000,000: 7s. Last read position: chr19:44,907,855
INFO 2026-06-02 23:59:01 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 01:49:10s. Time for last 1,000,000: 6s. Last read position: chr19:45,786,145
INFO 2026-06-02 23:59:09 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 01:49:18s. Time for last 1,000,000: 8s. Last read position: chr19:47,209,248
INFO 2026-06-02 23:59:17 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 01:49:26s. Time for last 1,000,000: 7s. Last read position: chr19:48,617,792
INFO 2026-06-02 23:59:26 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 01:49:35s. Time for last 1,000,000: 8s. Last read position: chr19:49,490,550
INFO 2026-06-02 23:59:33 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 01:49:42s. Time for last 1,000,000: 7s. Last read position: chr19:49,803,361
INFO 2026-06-02 23:59:50 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 01:50:00s. Time for last 1,000,000: 17s. Last read position: chr19:50,963,354
INFO 2026-06-02 23:59:56 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 01:50:06s. Time for last 1,000,000: 6s. Last read position: chr19:54,201,201
INFO 2026-06-03 00:00:05 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 01:50:14s. Time for last 1,000,000: 8s. Last read position: chr19:55,091,426
INFO 2026-06-03 00:00:10 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 01:50:20s. Time for last 1,000,000: 5s. Last read position: chr19:55,685,605
INFO 2026-06-03 00:00:15 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 01:50:25s. Time for last 1,000,000: 5s. Last read position: chr19:58,548,313
INFO 2026-06-03 00:00:25 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 01:50:35s. Time for last 1,000,000: 9s. Last read position: chr20:2,656,529
INFO 2026-06-03 00:00:32 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 01:50:41s. Time for last 1,000,000: 6s. Last read position: chr20:5,118,769
INFO 2026-06-03 00:00:43 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 01:50:52s. Time for last 1,000,000: 11s. Last read position: chr20:17,660,070
INFO 2026-06-03 00:00:50 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 01:50:59s. Time for last 1,000,000: 7s. Last read position: chr20:25,282,134
INFO 2026-06-03 00:01:00 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 01:51:09s. Time for last 1,000,000: 9s. Last read position: chr20:34,077,138
INFO 2026-06-03 00:01:12 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 01:51:21s. Time for last 1,000,000: 12s. Last read position: chr20:35,654,478
INFO 2026-06-03 00:01:26 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 01:51:35s. Time for last 1,000,000: 13s. Last read position: chr20:38,011,768
INFO 2026-06-03 00:01:33 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 01:51:42s. Time for last 1,000,000: 7s. Last read position: chr20:44,905,976
INFO 2026-06-03 00:01:49 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 01:51:59s. Time for last 1,000,000: 16s. Last read position: chr20:47,663,093
INFO 2026-06-03 00:01:57 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 01:52:06s. Time for last 1,000,000: 7s. Last read position: chr20:50,960,079
INFO 2026-06-03 00:02:14 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 01:52:23s. Time for last 1,000,000: 16s. Last read position: chr20:59,006,441
INFO 2026-06-03 00:02:20 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 01:52:30s. Time for last 1,000,000: 6s. Last read position: chr20:62,813,271
INFO 2026-06-03 00:02:28 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 01:52:38s. Time for last 1,000,000: 7s. Last read position: chr20:63,696,841
INFO 2026-06-03 00:02:32 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 01:52:41s. Time for last 1,000,000: 3s. Last read position: chr21:8,214,741
INFO 2026-06-03 00:02:33 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 01:52:42s. Time for last 1,000,000: 0s. Last read position: chr21:8,260,263
INFO 2026-06-03 00:02:34 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 01:52:43s. Time for last 1,000,000: 0s. Last read position: chr21:8,441,943
INFO 2026-06-03 00:02:35 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 01:52:45s. Time for last 1,000,000: 1s. Last read position: chr21:25,592,813
INFO 2026-06-03 00:02:44 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 01:52:53s. Time for last 1,000,000: 8s. Last read position: chr21:33,432,323
INFO 2026-06-03 00:02:53 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 01:53:03s. Time for last 1,000,000: 9s. Last read position: chr21:36,741,816
INFO 2026-06-03 00:03:27 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 01:53:37s. Time for last 1,000,000: 34s. Last read position: chr21:41,489,507
INFO 2026-06-03 00:03:35 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 01:53:44s. Time for last 1,000,000: 7s. Last read position: chr21:44,136,067
INFO 2026-06-03 00:03:44 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 01:53:53s. Time for last 1,000,000: 9s. Last read position: chr21:45,997,458
INFO 2026-06-03 00:03:55 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 01:54:05s. Time for last 1,000,000: 11s. Last read position: chr22:17,738,158
INFO 2026-06-03 00:04:05 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 01:54:14s. Time for last 1,000,000: 9s. Last read position: chr22:20,582,865
INFO 2026-06-03 00:04:15 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 01:54:25s. Time for last 1,000,000: 10s. Last read position: chr22:22,906,436
INFO 2026-06-03 00:04:22 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 01:54:31s. Time for last 1,000,000: 6s. Last read position: chr22:24,064,061
INFO 2026-06-03 00:04:29 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 01:54:39s. Time for last 1,000,000: 7s. Last read position: chr22:28,795,674
INFO 2026-06-03 00:04:44 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 01:54:53s. Time for last 1,000,000: 14s. Last read position: chr22:29,299,285
INFO 2026-06-03 00:04:57 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 01:55:06s. Time for last 1,000,000: 12s. Last read position: chr22:31,126,393
INFO 2026-06-03 00:05:12 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 01:55:22s. Time for last 1,000,000: 15s. Last read position: chr22:36,141,313
INFO 2026-06-03 00:05:19 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 01:55:28s. Time for last 1,000,000: 6s. Last read position: chr22:36,326,567
INFO 2026-06-03 00:05:24 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 01:55:33s. Time for last 1,000,000: 5s. Last read position: chr22:37,632,043
INFO 2026-06-03 00:05:33 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 01:55:43s. Time for last 1,000,000: 9s. Last read position: chr22:38,726,006
INFO 2026-06-03 00:05:41 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 01:55:51s. Time for last 1,000,000: 7s. Last read position: chr22:40,830,881
INFO 2026-06-03 00:05:52 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 01:56:02s. Time for last 1,000,000: 10s. Last read position: chr22:41,867,066
INFO 2026-06-03 00:05:57 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 01:56:06s. Time for last 1,000,000: 4s. Last read position: chr22:44,726,607
INFO 2026-06-03 00:06:05 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 01:56:14s. Time for last 1,000,000: 7s. Last read position: chr22:50,233,303
INFO 2026-06-03 00:06:18 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 01:56:27s. Time for last 1,000,000: 12s. Last read position: chr22:50,506,883
INFO 2026-06-03 00:06:26 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 01:56:35s. Time for last 1,000,000: 8s. Last read position: chrX:1,427,865
INFO 2026-06-03 00:06:31 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 01:56:40s. Time for last 1,000,000: 5s. Last read position: chrX:14,574,479
INFO 2026-06-03 00:06:38 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 01:56:47s. Time for last 1,000,000: 6s. Last read position: chrX:24,071,604
INFO 2026-06-03 00:06:51 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 01:57:00s. Time for last 1,000,000: 12s. Last read position: chrX:41,171,871
INFO 2026-06-03 00:07:21 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 01:57:31s. Time for last 1,000,000: 30s. Last read position: chrX:47,210,073
INFO 2026-06-03 00:07:31 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 01:57:41s. Time for last 1,000,000: 10s. Last read position: chrX:49,030,249
INFO 2026-06-03 00:07:39 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 01:57:49s. Time for last 1,000,000: 8s. Last read position: chrX:53,535,422
INFO 2026-06-03 00:08:00 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 01:58:10s. Time for last 1,000,000: 20s. Last read position: chrX:65,733,185
INFO 2026-06-03 00:08:14 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 01:58:24s. Time for last 1,000,000: 14s. Last read position: chrX:71,563,001
INFO 2026-06-03 00:08:26 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 01:58:35s. Time for last 1,000,000: 11s. Last read position: chrX:78,118,153
INFO 2026-06-03 00:08:31 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 01:58:41s. Time for last 1,000,000: 5s. Last read position: chrX:103,676,478
INFO 2026-06-03 00:08:38 SinglePassSamProgram Processed 638,000,000 records. Elapsed time: 01:58:48s. Time for last 1,000,000: 6s. Last read position: chrX:119,870,731
INFO 2026-06-03 00:08:52 SinglePassSamProgram Processed 639,000,000 records. Elapsed time: 01:59:01s. Time for last 1,000,000: 13s. Last read position: chrX:134,781,874
INFO 2026-06-03 00:09:00 SinglePassSamProgram Processed 640,000,000 records. Elapsed time: 01:59:09s. Time for last 1,000,000: 8s. Last read position: chrX:153,797,503
INFO 2026-06-03 00:09:10 SinglePassSamProgram Processed 641,000,000 records. Elapsed time: 01:59:20s. Time for last 1,000,000: 10s. Last read position: chrX:154,352,208
INFO 2026-06-03 00:09:37 SinglePassSamProgram Processed 642,000,000 records. Elapsed time: 01:59:47s. Time for last 1,000,000: 27s. Last read position: chrX:154,466,463
INFO 2026-06-03 00:09:41 SinglePassSamProgram Processed 643,000,000 records. Elapsed time: 01:59:50s. Time for last 1,000,000: 3s. Last read position: GL000220.1:114,178
INFO 2026-06-03 00:09:42 SinglePassSamProgram Processed 644,000,000 records. Elapsed time: 01:59:51s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,355
INFO 2026-06-03 00:09:42 SinglePassSamProgram Processed 645,000,000 records. Elapsed time: 01:59:52s. Time for last 1,000,000: 0s. Last read position: KI270733.1:131,292
INFO 2026-06-03 00:09:43 SinglePassSamProgram Processed 646,000,000 records. Elapsed time: 01:59:52s. Time for last 1,000,000: 0s. Last read position: KI270733.1:177,440
INFO 2026-06-03 00:09:44 SinglePassSamProgram Processed 647,000,000 records. Elapsed time: 01:59:53s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 00:09:44 SinglePassSamProgram Processed 648,000,000 records. Elapsed time: 01:59:54s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 00:09:45 SinglePassSamProgram Processed 649,000,000 records. Elapsed time: 01:59:54s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-06-03 00:09:46 SinglePassSamProgram Processed 650,000,000 records. Elapsed time: 01:59:55s. Time for last 1,000,000: 0s. Last read position: */*
[Wed Jun 03 00:09:47 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 119.98 minutes.
Runtime.totalMemory()=3425173504