File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/2f2ab2daf10787a78aa3b4fa17f837/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 02 21:41:24
                             Started mapping on |	Jun 02 21:47:47
                                    Finished on |	Jun 02 21:59:58
       Mapping speed, Million of reads per hour |	353.37

                          Number of input reads |	71753783
                      Average input read length |	218
                                    UNIQUE READS:
                   Uniquely mapped reads number |	67890890
                        Uniquely mapped reads % |	94.62%
                          Average mapped length |	218.23
                       Number of splices: Total |	49960564
            Number of splices: Annotated (sjdb) |	49024697
                       Number of splices: GT/AG |	49243877
                       Number of splices: GC/AG |	374099
                       Number of splices: AT/AC |	35311
               Number of splices: Non-canonical |	307277
                      Mismatch rate per base, % |	0.52%
                         Deletion rate per base |	0.03%
                        Deletion average length |	1.98
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.75
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	2924683
             % of reads mapped to multiple loci |	4.08%
        Number of reads mapped to too many loci |	167481
             % of reads mapped to too many loci |	0.23%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	671506
                 % of reads unmapped: too short |	0.94%
                Number of reads unmapped: other |	99223
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%