File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/7d505e3eaf018b2195d9f87f064adc/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 02 23:35:50
                             Started mapping on |	Jun 02 23:42:36
                                    Finished on |	Jun 03 01:01:07
       Mapping speed, Million of reads per hour |	226.30

                          Number of input reads |	296142999
                      Average input read length |	272
                                    UNIQUE READS:
                   Uniquely mapped reads number |	282793509
                        Uniquely mapped reads % |	95.49%
                          Average mapped length |	271.95
                       Number of splices: Total |	361129262
            Number of splices: Annotated (sjdb) |	357182583
                       Number of splices: GT/AG |	356841318
                       Number of splices: GC/AG |	2896199
                       Number of splices: AT/AC |	298150
               Number of splices: Non-canonical |	1093595
                      Mismatch rate per base, % |	0.16%
                         Deletion rate per base |	0.01%
                        Deletion average length |	2.13
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.90
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10349510
             % of reads mapped to multiple loci |	3.49%
        Number of reads mapped to too many loci |	328715
             % of reads mapped to too many loci |	0.11%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2412867
                 % of reads unmapped: too short |	0.81%
                Number of reads unmapped: other |	258398
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%