/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
INFO 2026-06-02 22:09:47 RExecutor Executing R script via command: Rscript /tmp/script13265844842584333926.R
ERROR 2026-06-02 22:09:47 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 22:09:47 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 22:09:47 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 22:09:47 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-02 22:09:47 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-02 22:09:47 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-02 22:09:47 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-02 22:09:47 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-02 22:09:47 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-02 22:09:47 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-02 22:09:47 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-02 22:09:47 ProcessExecutor [1] "Checking if R is installed"
ERROR 2026-06-02 22:09:47 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
Jun 02, 2026 10:09:47 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Tue Jun 02 22:09:47 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE 659_bTq-T1-TRNA-1_B23MHV2LT4_1_collectinsertsize.pdf --INPUT 659_bTq-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bTq-T1-TRNA-1_B23MHV2LT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Tue Jun 02 22:09:47 GMT 2026] Executing as ?@nf-c8b7ffc9ee693fc449292374b0bf431d-3c029-62zrf on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
INFO 2026-06-02 22:09:48 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,641,923
INFO 2026-06-02 22:09:49 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 0s. Last read position: chr1:6,644,578
INFO 2026-06-02 22:09:50 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 0s. Last read position: chr1:11,098,123
INFO 2026-06-02 22:09:51 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 0s. Last read position: chr1:15,934,759
INFO 2026-06-02 22:09:51 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 0s. Last read position: chr1:19,197,772
INFO 2026-06-02 22:09:52 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 0s. Last read position: chr1:21,842,260
INFO 2026-06-02 22:09:53 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 0s. Last read position: chr1:23,088,832
INFO 2026-06-02 22:09:54 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 0s. Last read position: chr1:26,184,146
INFO 2026-06-02 22:09:54 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 0s. Last read position: chr1:27,882,686
INFO 2026-06-02 22:09:55 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 0s. Last read position: chr1:32,036,924
INFO 2026-06-02 22:09:56 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 0s. Last read position: chr1:35,192,589
INFO 2026-06-02 22:09:57 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 0s. Last read position: chr1:39,349,521
INFO 2026-06-02 22:09:57 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 0s. Last read position: chr1:42,696,856
INFO 2026-06-02 22:09:58 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 0s. Last read position: chr1:44,803,972
INFO 2026-06-02 22:09:59 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 0s. Last read position: chr1:51,790,533
INFO 2026-06-02 22:10:00 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 0s. Last read position: chr1:61,082,784
INFO 2026-06-02 22:10:00 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 0s. Last read position: chr1:77,728,305
INFO 2026-06-02 22:10:01 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 0s. Last read position: chr1:90,940,072
INFO 2026-06-02 22:10:02 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 0s. Last read position: chr1:93,215,037
INFO 2026-06-02 22:10:03 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 0s. Last read position: chr1:108,148,300
INFO 2026-06-02 22:10:04 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 0s. Last read position: chr1:109,629,353
INFO 2026-06-02 22:10:04 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 0s. Last read position: chr1:111,192,278
INFO 2026-06-02 22:10:05 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 0s. Last read position: chr1:113,619,806
INFO 2026-06-02 22:10:06 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 0s. Last read position: chr1:114,718,154
INFO 2026-06-02 22:10:07 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 0s. Last read position: chr1:116,403,915
INFO 2026-06-02 22:10:07 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 0s. Last read position: chr1:119,916,429
INFO 2026-06-02 22:10:08 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 0s. Last read position: chr1:145,669,939
INFO 2026-06-02 22:10:09 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 0s. Last read position: chr1:147,619,390
INFO 2026-06-02 22:10:10 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 0s. Last read position: chr1:149,840,848
INFO 2026-06-02 22:10:10 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 0s. Last read position: chr1:150,512,416
INFO 2026-06-02 22:10:11 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 0s. Last read position: chr1:151,428,039
INFO 2026-06-02 22:10:12 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 0s. Last read position: chr1:153,941,241
INFO 2026-06-02 22:10:12 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 0s. Last read position: chr1:154,176,116
INFO 2026-06-02 22:10:13 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 0s. Last read position: chr1:155,015,543
INFO 2026-06-02 22:10:14 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 0s. Last read position: chr1:155,480,006
INFO 2026-06-02 22:10:15 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 0s. Last read position: chr1:156,134,401
INFO 2026-06-02 22:10:15 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 0s. Last read position: chr1:156,652,242
INFO 2026-06-02 22:10:16 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 0s. Last read position: chr1:160,311,920
INFO 2026-06-02 22:10:17 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 0s. Last read position: chr1:161,998,001
INFO 2026-06-02 22:10:18 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 0s. Last read position: chr1:169,127,228
INFO 2026-06-02 22:10:18 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 0s. Last read position: chr1:171,577,576
INFO 2026-06-02 22:10:19 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 0s. Last read position: chr1:179,863,473
INFO 2026-06-02 22:10:20 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 0s. Last read position: chr1:183,243,223
INFO 2026-06-02 22:10:21 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 0s. Last read position: chr1:186,335,430
INFO 2026-06-02 22:10:21 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 0s. Last read position: chr1:198,297,143
INFO 2026-06-02 22:10:22 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 0s. Last read position: chr1:202,010,678
INFO 2026-06-02 22:10:23 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 0s. Last read position: chr1:203,848,368
INFO 2026-06-02 22:10:24 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 0s. Last read position: chr1:206,021,058
INFO 2026-06-02 22:10:24 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 0s. Last read position: chr1:208,098,912
INFO 2026-06-02 22:10:25 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 0s. Last read position: chr1:214,483,250
INFO 2026-06-02 22:10:26 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 0s. Last read position: chr1:223,609,230
INFO 2026-06-02 22:10:27 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 0s. Last read position: chr1:226,065,702
INFO 2026-06-02 22:10:27 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 0s. Last read position: chr1:230,753,688
INFO 2026-06-02 22:10:28 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 0s. Last read position: chr1:235,743,981
INFO 2026-06-02 22:10:29 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 0s. Last read position: chr1:244,857,603
INFO 2026-06-02 22:10:30 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 0s. Last read position: chr2:3,580,141
INFO 2026-06-02 22:10:31 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 0s. Last read position: chr2:10,802,548
INFO 2026-06-02 22:10:31 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 0s. Last read position: chr2:20,255,252
INFO 2026-06-02 22:10:32 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 0s. Last read position: chr2:26,109,879
INFO 2026-06-02 22:10:33 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 0s. Last read position: chr2:27,583,043
INFO 2026-06-02 22:10:34 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 0s. Last read position: chr2:32,463,328
INFO 2026-06-02 22:10:34 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,264
INFO 2026-06-02 22:10:35 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,264
INFO 2026-06-02 22:10:36 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,406
INFO 2026-06-02 22:10:36 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,406
INFO 2026-06-02 22:10:37 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 0s. Last read position: chr2:36,849,736
INFO 2026-06-02 22:10:38 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 0s. Last read position: chr2:42,261,161
INFO 2026-06-02 22:10:39 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 0s. Last read position: chr2:43,943,806
INFO 2026-06-02 22:10:39 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 0s. Last read position: chr2:47,379,899
INFO 2026-06-02 22:10:40 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 0s. Last read position: chr2:54,629,606
INFO 2026-06-02 22:10:41 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 0s. Last read position: chr2:55,050,236
INFO 2026-06-02 22:10:42 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 0s. Last read position: chr2:61,868,431
INFO 2026-06-02 22:10:42 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 0s. Last read position: chr2:69,519,116
INFO 2026-06-02 22:10:43 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 0s. Last read position: chr2:73,252,708
INFO 2026-06-02 22:10:44 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 0s. Last read position: chr2:74,867,638
INFO 2026-06-02 22:10:45 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 0s. Last read position: chr2:86,108,510
INFO 2026-06-02 22:10:45 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 0s. Last read position: chr2:95,087,425
INFO 2026-06-02 22:10:46 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 0s. Last read position: chr2:97,158,621
INFO 2026-06-02 22:10:47 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 0s. Last read position: chr2:101,004,259
INFO 2026-06-02 22:10:48 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 0s. Last read position: chr2:108,470,870
INFO 2026-06-02 22:10:48 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 0s. Last read position: chr2:108,768,353
INFO 2026-06-02 22:10:49 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 0s. Last read position: chr2:111,780,370
INFO 2026-06-02 22:10:50 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 0s. Last read position: chr2:113,931,373
INFO 2026-06-02 22:10:51 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 0s. Last read position: chr2:127,633,256
INFO 2026-06-02 22:10:51 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 0s. Last read position: chr2:135,162,838
INFO 2026-06-02 22:10:52 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 0s. Last read position: chr2:152,673,011
INFO 2026-06-02 22:10:53 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 0s. Last read position: chr2:160,045,012
INFO 2026-06-02 22:10:54 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 0s. Last read position: chr2:170,949,715
INFO 2026-06-02 22:10:54 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 0s. Last read position: chr2:174,571,705
INFO 2026-06-02 22:10:55 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 0s. Last read position: chr2:178,612,937
INFO 2026-06-02 22:10:56 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 0s. Last read position: chr2:186,646,847
INFO 2026-06-02 22:10:57 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 0s. Last read position: chr2:190,927,449
INFO 2026-06-02 22:10:58 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 0s. Last read position: chr2:197,501,124
INFO 2026-06-02 22:10:58 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 0s. Last read position: chr2:202,514,892
INFO 2026-06-02 22:10:59 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 0s. Last read position: chr2:207,575,382
INFO 2026-06-02 22:11:00 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 0s. Last read position: chr2:215,376,522
INFO 2026-06-02 22:11:01 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 0s. Last read position: chr2:215,419,241
INFO 2026-06-02 22:11:01 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 0s. Last read position: chr2:218,234,388
INFO 2026-06-02 22:11:02 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 0s. Last read position: chr2:219,176,232
INFO 2026-06-02 22:11:03 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 0s. Last read position: chr2:224,001,841
INFO 2026-06-02 22:11:04 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 0s. Last read position: chr2:230,878,484
INFO 2026-06-02 22:11:04 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 0s. Last read position: chr2:232,566,876
INFO 2026-06-02 22:11:05 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 0s. Last read position: chr2:237,396,727
INFO 2026-06-02 22:11:06 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 0s. Last read position: chr2:241,096,018
INFO 2026-06-02 22:11:07 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 0s. Last read position: chr3:5,195,209
INFO 2026-06-02 22:11:08 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 0s. Last read position: chr3:11,601,848
INFO 2026-06-02 22:11:08 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 0s. Last read position: chr3:15,053,412
INFO 2026-06-02 22:11:09 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 0s. Last read position: chr3:30,606,936
INFO 2026-06-02 22:11:10 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 0s. Last read position: chr3:36,856,318
INFO 2026-06-02 22:11:11 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 0s. Last read position: chr3:39,410,812
INFO 2026-06-02 22:11:11 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 0s. Last read position: chr3:42,202,485
INFO 2026-06-02 22:11:12 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 0s. Last read position: chr3:46,373,149
INFO 2026-06-02 22:11:13 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 0s. Last read position: chr3:47,420,693
INFO 2026-06-02 22:11:14 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 0s. Last read position: chr3:48,469,755
INFO 2026-06-02 22:11:14 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 0s. Last read position: chr3:49,111,654
INFO 2026-06-02 22:11:15 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 0s. Last read position: chr3:49,902,685
INFO 2026-06-02 22:11:16 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 0s. Last read position: chr3:51,959,074
INFO 2026-06-02 22:11:17 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 0s. Last read position: chr3:52,523,903
INFO 2026-06-02 22:11:17 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 0s. Last read position: chr3:57,278,745
INFO 2026-06-02 22:11:18 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 0s. Last read position: chr3:58,149,912
INFO 2026-06-02 22:11:19 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 0s. Last read position: chr3:69,180,873
INFO 2026-06-02 22:11:20 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 0s. Last read position: chr3:100,748,172
INFO 2026-06-02 22:11:21 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 0s. Last read position: chr3:114,351,649
INFO 2026-06-02 22:11:21 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 0s. Last read position: chr3:124,659,390
INFO 2026-06-02 22:11:22 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 0s. Last read position: chr3:129,171,179
INFO 2026-06-02 22:11:23 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 0s. Last read position: chr3:138,508,463
INFO 2026-06-02 22:11:24 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 0s. Last read position: chr3:150,545,730
INFO 2026-06-02 22:11:24 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 0s. Last read position: chr3:169,774,497
INFO 2026-06-02 22:11:25 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 0s. Last read position: chr3:172,133,480
INFO 2026-06-02 22:11:26 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 0s. Last read position: chr3:179,364,339
INFO 2026-06-02 22:11:27 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 0s. Last read position: chr3:183,807,056
INFO 2026-06-02 22:11:27 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 0s. Last read position: chr3:184,321,893
INFO 2026-06-02 22:11:28 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 0s. Last read position: chr3:185,918,370
INFO 2026-06-02 22:11:29 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 0s. Last read position: chr3:191,375,498
INFO 2026-06-02 22:11:30 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 0s. Last read position: chr3:195,618,854
INFO 2026-06-02 22:11:30 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 0s. Last read position: chr3:195,725,154
INFO 2026-06-02 22:11:31 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 0s. Last read position: chr3:195,729,667
INFO 2026-06-02 22:11:32 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 0s. Last read position: chr3:195,780,882
INFO 2026-06-02 22:11:32 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 0s. Last read position: chr3:195,784,915
INFO 2026-06-02 22:11:33 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 0s. Last read position: chr3:195,791,436
INFO 2026-06-02 22:11:34 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 0s. Last read position: chr3:196,947,386
INFO 2026-06-02 22:11:35 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 0s. Last read position: chr4:1,025,231
INFO 2026-06-02 22:11:35 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 0s. Last read position: chr4:3,516,116
INFO 2026-06-02 22:11:36 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 0s. Last read position: chr4:17,584,989
INFO 2026-06-02 22:11:37 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 0s. Last read position: chr4:39,457,610
INFO 2026-06-02 22:11:38 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 0s. Last read position: chr4:55,370,067
INFO 2026-06-02 22:11:38 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 0s. Last read position: chr4:73,177,409
INFO 2026-06-02 22:11:39 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 0s. Last read position: chr4:82,426,066
INFO 2026-06-02 22:11:40 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 0s. Last read position: chr4:88,056,160
INFO 2026-06-02 22:11:41 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 0s. Last read position: chr4:108,622,014
INFO 2026-06-02 22:11:41 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 0s. Last read position: chr4:123,401,908
INFO 2026-06-02 22:11:42 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 0s. Last read position: chr4:147,879,328
INFO 2026-06-02 22:11:43 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 0s. Last read position: chr4:159,329,871
INFO 2026-06-02 22:11:44 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 0s. Last read position: chr4:186,603,373
INFO 2026-06-02 22:11:44 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 0s. Last read position: chr5:1,321,784
INFO 2026-06-02 22:11:45 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 0s. Last read position: chr5:14,358,301
INFO 2026-06-02 22:11:46 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 0s. Last read position: chr5:32,088,156
INFO 2026-06-02 22:11:47 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 0s. Last read position: chr5:38,869,036
INFO 2026-06-02 22:11:47 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 0s. Last read position: chr5:52,915,509
INFO 2026-06-02 22:11:48 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 0s. Last read position: chr5:62,512,277
INFO 2026-06-02 22:11:49 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 0s. Last read position: chr5:69,618,313
INFO 2026-06-02 22:11:50 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 0s. Last read position: chr5:73,502,512
INFO 2026-06-02 22:11:50 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 0s. Last read position: chr5:78,089,468
INFO 2026-06-02 22:11:51 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 0s. Last read position: chr5:86,619,388
INFO 2026-06-02 22:11:52 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 0s. Last read position: chr5:96,781,172
INFO 2026-06-02 22:11:53 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 0s. Last read position: chr5:112,892,810
INFO 2026-06-02 22:11:53 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 0s. Last read position: chr5:128,134,170
INFO 2026-06-02 22:11:54 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 0s. Last read position: chr5:133,956,921
INFO 2026-06-02 22:11:55 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 0s. Last read position: chr5:136,054,725
INFO 2026-06-02 22:11:56 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 0s. Last read position: chr5:138,929,252
INFO 2026-06-02 22:11:56 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 0s. Last read position: chr5:140,676,764
INFO 2026-06-02 22:11:57 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 0s. Last read position: chr5:141,427,797
INFO 2026-06-02 22:11:58 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 0s. Last read position: chr5:142,314,756
INFO 2026-06-02 22:11:58 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 0s. Last read position: chr5:149,977,690
INFO 2026-06-02 22:11:59 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 0s. Last read position: chr5:150,402,575
INFO 2026-06-02 22:12:00 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 0s. Last read position: chr5:150,648,743
INFO 2026-06-02 22:12:01 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 0s. Last read position: chr5:154,811,284
INFO 2026-06-02 22:12:02 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 0s. Last read position: chr5:169,601,587
INFO 2026-06-02 22:12:02 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 0s. Last read position: chr5:171,400,907
INFO 2026-06-02 22:12:03 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 0s. Last read position: chr5:177,135,611
INFO 2026-06-02 22:12:04 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 0s. Last read position: chr5:178,713,116
INFO 2026-06-02 22:12:05 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 0s. Last read position: chr5:179,820,997
INFO 2026-06-02 22:12:05 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 0s. Last read position: chr5:180,850,327
INFO 2026-06-02 22:12:06 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 0s. Last read position: chr6:2,970,717
INFO 2026-06-02 22:12:07 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 0s. Last read position: chr6:7,541,945
INFO 2026-06-02 22:12:08 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 0s. Last read position: chr6:7,910,592
INFO 2026-06-02 22:12:08 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 0s. Last read position: chr6:18,258,299
INFO 2026-06-02 22:12:09 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 0s. Last read position: chr6:26,156,704
INFO 2026-06-02 22:12:10 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 0s. Last read position: chr6:27,146,643
INFO 2026-06-02 22:12:10 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 0s. Last read position: chr6:28,232,641
INFO 2026-06-02 22:12:11 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 0s. Last read position: chr6:30,198,944
INFO 2026-06-02 22:12:12 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 0s. Last read position: chr6:30,897,397
INFO 2026-06-02 22:12:13 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 0s. Last read position: chr6:31,632,172
INFO 2026-06-02 22:12:13 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 0s. Last read position: chr6:31,815,898
INFO 2026-06-02 22:12:14 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 0s. Last read position: chr6:32,115,727
INFO 2026-06-02 22:12:15 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 0s. Last read position: chr6:33,005,094
INFO 2026-06-02 22:12:16 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 0s. Last read position: chr6:33,662,549
INFO 2026-06-02 22:12:16 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 0s. Last read position: chr6:35,290,290
INFO 2026-06-02 22:12:17 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 0s. Last read position: chr6:41,079,089
INFO 2026-06-02 22:12:18 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 0s. Last read position: chr6:43,066,487
INFO 2026-06-02 22:12:19 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 0s. Last read position: chr6:44,251,563
INFO 2026-06-02 22:12:19 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 0s. Last read position: chr6:53,065,627
INFO 2026-06-02 22:12:20 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 0s. Last read position: chr6:56,619,963
INFO 2026-06-02 22:12:21 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 0s. Last read position: chr6:73,519,459
INFO 2026-06-02 22:12:22 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 0s. Last read position: chr6:82,200,211
INFO 2026-06-02 22:12:22 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 0s. Last read position: chr6:87,609,182
INFO 2026-06-02 22:12:23 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 0s. Last read position: chr6:105,281,787
INFO 2026-06-02 22:12:24 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 0s. Last read position: chr6:110,212,156
INFO 2026-06-02 22:12:25 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 0s. Last read position: chr6:118,815,059
INFO 2026-06-02 22:12:25 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 0s. Last read position: chr6:131,869,377
INFO 2026-06-02 22:12:26 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 0s. Last read position: chr6:136,388,393
INFO 2026-06-02 22:12:27 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 0s. Last read position: chr6:142,773,233
INFO 2026-06-02 22:12:28 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 0s. Last read position: chr6:149,742,509
INFO 2026-06-02 22:12:28 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 0s. Last read position: chr6:154,410,967
INFO 2026-06-02 22:12:29 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 0s. Last read position: chr6:158,767,321
INFO 2026-06-02 22:12:30 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 0s. Last read position: chr6:159,748,252
INFO 2026-06-02 22:12:31 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 0s. Last read position: chr6:167,914,654
INFO 2026-06-02 22:12:31 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 0s. Last read position: chr7:832,558
INFO 2026-06-02 22:12:32 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 0s. Last read position: chr7:2,379,392
INFO 2026-06-02 22:12:33 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 0s. Last read position: chr7:5,356,976
INFO 2026-06-02 22:12:34 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 0s. Last read position: chr7:5,528,019
INFO 2026-06-02 22:12:34 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 0s. Last read position: chr7:5,529,387
INFO 2026-06-02 22:12:35 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 0s. Last read position: chr7:6,691,971
INFO 2026-06-02 22:12:36 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 0s. Last read position: chr7:16,801,162
INFO 2026-06-02 22:12:37 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 0s. Last read position: chr7:23,260,656
INFO 2026-06-02 22:12:37 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 0s. Last read position: chr7:27,769,735
INFO 2026-06-02 22:12:38 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 0s. Last read position: chr7:35,882,537
INFO 2026-06-02 22:12:39 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 0s. Last read position: chr7:44,115,320
INFO 2026-06-02 22:12:40 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 0s. Last read position: chr7:48,335,521
INFO 2026-06-02 22:12:40 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 0s. Last read position: chr7:64,991,431
INFO 2026-06-02 22:12:41 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 0s. Last read position: chr7:73,184,687
INFO 2026-06-02 22:12:42 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 0s. Last read position: chr7:74,376,439
INFO 2026-06-02 22:12:42 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 0s. Last read position: chr7:75,883,785
INFO 2026-06-02 22:12:43 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 0s. Last read position: chr7:77,583,622
INFO 2026-06-02 22:12:44 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 0s. Last read position: chr7:92,022,930
INFO 2026-06-02 22:12:45 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 0s. Last read position: chr7:94,405,221
INFO 2026-06-02 22:12:45 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 0s. Last read position: chr7:98,948,221
INFO 2026-06-02 22:12:46 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 0s. Last read position: chr7:100,096,147
INFO 2026-06-02 22:12:47 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 0s. Last read position: chr7:101,001,691
INFO 2026-06-02 22:12:48 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 0s. Last read position: chr7:102,668,945
INFO 2026-06-02 22:12:48 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 0s. Last read position: chr7:112,773,012
INFO 2026-06-02 22:12:49 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 0s. Last read position: chr7:127,807,521
INFO 2026-06-02 22:12:50 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 0s. Last read position: chr7:134,960,008
INFO 2026-06-02 22:12:51 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 0s. Last read position: chr7:140,687,093
INFO 2026-06-02 22:12:51 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 0s. Last read position: chr7:150,372,017
INFO 2026-06-02 22:12:52 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 0s. Last read position: chr7:155,644,906
INFO 2026-06-02 22:12:53 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 0s. Last read position: chr8:9,706,987
INFO 2026-06-02 22:12:54 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 0s. Last read position: chr8:18,014,610
INFO 2026-06-02 22:12:54 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 0s. Last read position: chr8:22,608,040
INFO 2026-06-02 22:12:55 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 0s. Last read position: chr8:26,652,286
INFO 2026-06-02 22:12:56 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 0s. Last read position: chr8:30,812,319
INFO 2026-06-02 22:12:57 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 0s. Last read position: chr8:38,326,820
INFO 2026-06-02 22:12:57 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 0s. Last read position: chr8:41,932,934
INFO 2026-06-02 22:12:58 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 0s. Last read position: chr8:47,943,266
INFO 2026-06-02 22:12:59 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 0s. Last read position: chr8:60,741,793
INFO 2026-06-02 22:13:00 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 0s. Last read position: chr8:69,589,038
INFO 2026-06-02 22:13:00 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 0s. Last read position: chr8:75,560,412
INFO 2026-06-02 22:13:01 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 0s. Last read position: chr8:94,160,016
INFO 2026-06-02 22:13:02 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 0s. Last read position: chr8:98,767,337
INFO 2026-06-02 22:13:03 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 0s. Last read position: chr8:100,718,105
INFO 2026-06-02 22:13:04 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 0s. Last read position: chr8:103,375,837
INFO 2026-06-02 22:13:04 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 0s. Last read position: chr8:119,240,169
INFO 2026-06-02 22:13:05 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 0s. Last read position: chr8:125,018,191
INFO 2026-06-02 22:13:06 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 0s. Last read position: chr8:129,842,147
INFO 2026-06-02 22:13:06 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 0s. Last read position: chr8:140,744,670
INFO 2026-06-02 22:13:07 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 0s. Last read position: chr8:143,599,534
INFO 2026-06-02 22:13:08 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 0s. Last read position: chr8:143,858,185
INFO 2026-06-02 22:13:09 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 0s. Last read position: chr8:143,858,778
INFO 2026-06-02 22:13:09 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 0s. Last read position: chr8:143,859,911
INFO 2026-06-02 22:13:10 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,280
INFO 2026-06-02 22:13:11 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,674
INFO 2026-06-02 22:13:11 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 0s. Last read position: chr8:143,862,909
INFO 2026-06-02 22:13:12 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 0s. Last read position: chr8:143,863,389
INFO 2026-06-02 22:13:13 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 0s. Last read position: chr8:143,864,679
INFO 2026-06-02 22:13:14 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 0s. Last read position: chr8:143,865,784
INFO 2026-06-02 22:13:14 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,318
INFO 2026-06-02 22:13:15 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 0s. Last read position: chr8:143,871,042
INFO 2026-06-02 22:13:16 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 0s. Last read position: chr8:143,919,124
INFO 2026-06-02 22:13:16 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 0s. Last read position: chr8:143,923,002
INFO 2026-06-02 22:13:17 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 0s. Last read position: chr8:143,932,817
INFO 2026-06-02 22:13:18 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 0s. Last read position: chr8:144,357,690
INFO 2026-06-02 22:13:19 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 0s. Last read position: chr9:5,081,748
INFO 2026-06-02 22:13:19 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 0s. Last read position: chr9:19,346,541
INFO 2026-06-02 22:13:20 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 0s. Last read position: chr9:20,820,409
INFO 2026-06-02 22:13:21 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 0s. Last read position: chr9:33,675,463
INFO 2026-06-02 22:13:22 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 0s. Last read position: chr9:35,660,770
INFO 2026-06-02 22:13:23 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 0s. Last read position: chr9:37,885,961
INFO 2026-06-02 22:13:23 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 0s. Last read position: chr9:70,282,507
INFO 2026-06-02 22:13:24 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 0s. Last read position: chr9:83,686,114
INFO 2026-06-02 22:13:25 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 0s. Last read position: chr9:89,318,591
INFO 2026-06-02 22:13:26 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 0s. Last read position: chr9:93,259,232
INFO 2026-06-02 22:13:26 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 0s. Last read position: chr9:96,938,954
INFO 2026-06-02 22:13:27 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 0s. Last read position: chr9:104,113,359
INFO 2026-06-02 22:13:28 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 0s. Last read position: chr9:110,136,693
INFO 2026-06-02 22:13:29 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 0s. Last read position: chr9:114,168,344
INFO 2026-06-02 22:13:30 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 0s. Last read position: chr9:122,159,628
INFO 2026-06-02 22:13:31 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 0s. Last read position: chr9:125,238,139
INFO 2026-06-02 22:13:31 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 0s. Last read position: chr9:127,710,717
INFO 2026-06-02 22:13:32 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 0s. Last read position: chr9:128,322,878
INFO 2026-06-02 22:13:33 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 0s. Last read position: chr9:128,689,604
INFO 2026-06-02 22:13:34 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 0s. Last read position: chr9:129,134,834
INFO 2026-06-02 22:13:35 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 0s. Last read position: chr9:131,144,696
INFO 2026-06-02 22:13:35 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 0s. Last read position: chr9:132,264,681
INFO 2026-06-02 22:13:36 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 0s. Last read position: chr9:133,262,043
INFO 2026-06-02 22:13:37 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 0s. Last read position: chr9:134,050,421
INFO 2026-06-02 22:13:38 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 0s. Last read position: chr9:136,216,630
INFO 2026-06-02 22:13:38 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 0s. Last read position: chr9:136,496,715
INFO 2026-06-02 22:13:39 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 0s. Last read position: chr9:136,837,357
INFO 2026-06-02 22:13:40 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 0s. Last read position: chr9:137,040,514
INFO 2026-06-02 22:13:41 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 0s. Last read position: chr9:137,242,761
INFO 2026-06-02 22:13:41 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 0s. Last read position: chr9:137,614,721
INFO 2026-06-02 22:13:42 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 0s. Last read position: chr10:5,454,406
INFO 2026-06-02 22:13:43 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 0s. Last read position: chr10:13,109,240
INFO 2026-06-02 22:13:44 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 0s. Last read position: chr10:23,037,349
INFO 2026-06-02 22:13:45 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 0s. Last read position: chr10:27,537,908
INFO 2026-06-02 22:13:45 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 0s. Last read position: chr10:32,021,261
INFO 2026-06-02 22:13:46 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 0s. Last read position: chr10:32,929,883
INFO 2026-06-02 22:13:47 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 0s. Last read position: chr10:45,699,479
INFO 2026-06-02 22:13:48 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 0s. Last read position: chr10:48,011,512
INFO 2026-06-02 22:13:49 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 0s. Last read position: chr10:60,785,769
INFO 2026-06-02 22:13:49 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 0s. Last read position: chr10:69,088,155
INFO 2026-06-02 22:13:50 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 0s. Last read position: chr10:73,163,880
INFO 2026-06-02 22:13:51 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 0s. Last read position: chr10:75,150,531
INFO 2026-06-02 22:13:52 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 0s. Last read position: chr10:80,164,064
INFO 2026-06-02 22:13:53 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 0s. Last read position: chr10:87,965,349
INFO 2026-06-02 22:13:53 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 0s. Last read position: chr10:93,381,272
INFO 2026-06-02 22:13:54 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 0s. Last read position: chr10:96,645,497
INFO 2026-06-02 22:13:55 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 0s. Last read position: chr10:100,348,171
INFO 2026-06-02 22:13:56 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 0s. Last read position: chr10:102,148,370
INFO 2026-06-02 22:13:57 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr10:104,018,200
INFO 2026-06-02 22:13:58 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 0s. Last read position: chr10:111,078,358
INFO 2026-06-02 22:13:59 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 0s. Last read position: chr10:116,929,946
INFO 2026-06-02 22:13:59 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 0s. Last read position: chr10:120,354,827
INFO 2026-06-02 22:14:00 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 0s. Last read position: chr10:125,026,571
INFO 2026-06-02 22:14:01 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 0s. Last read position: chr10:130,160,060
INFO 2026-06-02 22:14:02 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 0s. Last read position: chr11:314,992
INFO 2026-06-02 22:14:02 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 0s. Last read position: chr11:610,748
INFO 2026-06-02 22:14:03 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 0s. Last read position: chr11:986,920
INFO 2026-06-02 22:14:04 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 0s. Last read position: chr11:1,088,018
INFO 2026-06-02 22:14:05 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 0s. Last read position: chr11:1,243,119
INFO 2026-06-02 22:14:06 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 0s. Last read position: chr11:1,248,036
INFO 2026-06-02 22:14:06 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 0s. Last read position: chr11:1,757,450
INFO 2026-06-02 22:14:07 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 0s. Last read position: chr11:3,824,270
INFO 2026-06-02 22:14:08 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 0s. Last read position: chr11:8,081,399
INFO 2026-06-02 22:14:09 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 0s. Last read position: chr11:10,799,734
INFO 2026-06-02 22:14:09 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 0s. Last read position: chr11:14,819,144
INFO 2026-06-02 22:14:10 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 0s. Last read position: chr11:18,519,599
INFO 2026-06-02 22:14:11 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 0s. Last read position: chr11:33,748,788
INFO 2026-06-02 22:14:12 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 0s. Last read position: chr11:43,492,065
INFO 2026-06-02 22:14:13 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 0s. Last read position: chr11:46,682,039
INFO 2026-06-02 22:14:14 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 0s. Last read position: chr11:57,302,455
INFO 2026-06-02 22:14:14 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 0s. Last read position: chr11:57,815,476
INFO 2026-06-02 22:14:15 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 0s. Last read position: chr11:61,329,384
INFO 2026-06-02 22:14:16 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 0s. Last read position: chr11:62,517,442
INFO 2026-06-02 22:14:17 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 0s. Last read position: chr11:62,526,397
INFO 2026-06-02 22:14:17 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 0s. Last read position: chr11:62,535,990
INFO 2026-06-02 22:14:18 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 0s. Last read position: chr11:62,801,975
INFO 2026-06-02 22:14:19 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 0s. Last read position: chr11:64,263,576
INFO 2026-06-02 22:14:20 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 0s. Last read position: chr11:65,120,686
INFO 2026-06-02 22:14:20 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 0s. Last read position: chr11:65,576,394
INFO 2026-06-02 22:14:21 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 0s. Last read position: chr11:65,863,682
INFO 2026-06-02 22:14:22 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 0s. Last read position: chr11:66,694,168
INFO 2026-06-02 22:14:23 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 0s. Last read position: chr11:67,497,237
INFO 2026-06-02 22:14:23 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 0s. Last read position: chr11:68,436,924
INFO 2026-06-02 22:14:24 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 0s. Last read position: chr11:70,414,638
INFO 2026-06-02 22:14:25 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 0s. Last read position: chr11:72,759,196
INFO 2026-06-02 22:14:26 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 0s. Last read position: chr11:75,566,456
INFO 2026-06-02 22:14:27 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 0s. Last read position: chr11:85,654,223
INFO 2026-06-02 22:14:28 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 0s. Last read position: chr11:94,969,995
INFO 2026-06-02 22:14:29 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr11:102,401,608
INFO 2026-06-02 22:14:30 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 0s. Last read position: chr11:111,875,375
INFO 2026-06-02 22:14:31 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 0s. Last read position: chr11:118,369,520
INFO 2026-06-02 22:14:31 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 0s. Last read position: chr11:118,901,141
INFO 2026-06-02 22:14:32 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 0s. Last read position: chr11:120,442,133
INFO 2026-06-02 22:14:33 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 0s. Last read position: chr11:124,753,566
INFO 2026-06-02 22:14:34 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 0s. Last read position: chr11:128,976,623
INFO 2026-06-02 22:14:34 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 0s. Last read position: chr11:134,371,079
INFO 2026-06-02 22:14:35 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 0s. Last read position: chr12:4,299,915
INFO 2026-06-02 22:14:36 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 0s. Last read position: chr12:6,492,899
INFO 2026-06-02 22:14:37 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 0s. Last read position: chr12:6,936,708
INFO 2026-06-02 22:14:37 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 0s. Last read position: chr12:9,079,252
INFO 2026-06-02 22:14:38 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 0s. Last read position: chr12:12,477,928
INFO 2026-06-02 22:14:39 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 0s. Last read position: chr12:15,650,899
INFO 2026-06-02 22:14:40 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 0s. Last read position: chr12:27,963,248
INFO 2026-06-02 22:14:41 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 0s. Last read position: chr12:34,026,242
INFO 2026-06-02 22:14:42 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 0s. Last read position: chr12:47,078,319
INFO 2026-06-02 22:14:43 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr12:49,040,426
INFO 2026-06-02 22:14:44 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 0s. Last read position: chr12:49,323,602
INFO 2026-06-02 22:14:45 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 0s. Last read position: chr12:51,116,356
INFO 2026-06-02 22:14:45 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 0s. Last read position: chr12:52,904,915
INFO 2026-06-02 22:14:46 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr12:53,060,995
INFO 2026-06-02 22:14:48 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr12:53,543,433
INFO 2026-06-02 22:14:49 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr12:55,726,735
INFO 2026-06-02 22:14:50 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr12:56,133,837
INFO 2026-06-02 22:14:51 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr12:56,605,166
INFO 2026-06-02 22:14:52 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr12:57,091,903
INFO 2026-06-02 22:14:53 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 0s. Last read position: chr12:57,185,755
INFO 2026-06-02 22:14:54 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 0s. Last read position: chr12:57,727,998
INFO 2026-06-02 22:14:55 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 0s. Last read position: chr12:67,657,590
INFO 2026-06-02 22:14:56 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 0s. Last read position: chr12:71,632,346
INFO 2026-06-02 22:14:56 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 0s. Last read position: chr12:89,611,194
INFO 2026-06-02 22:14:57 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 0s. Last read position: chr12:98,594,057
INFO 2026-06-02 22:14:58 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr12:104,327,658
INFO 2026-06-02 22:14:59 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr12:110,342,403
INFO 2026-06-02 22:15:00 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 0s. Last read position: chr12:112,408,546
INFO 2026-06-02 22:15:01 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 0s. Last read position: chr12:118,161,958
INFO 2026-06-02 22:15:02 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 0s. Last read position: chr12:120,694,874
INFO 2026-06-02 22:15:02 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 0s. Last read position: chr12:122,702,152
INFO 2026-06-02 22:15:03 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 0s. Last read position: chr12:124,362,191
INFO 2026-06-02 22:15:04 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 0s. Last read position: chr12:132,570,166
INFO 2026-06-02 22:15:05 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 0s. Last read position: chr13:19,993,501
INFO 2026-06-02 22:15:06 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 0s. Last read position: chr13:20,800,214
INFO 2026-06-02 22:15:06 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 0s. Last read position: chr13:24,434,982
INFO 2026-06-02 22:15:07 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 0s. Last read position: chr13:27,256,185
INFO 2026-06-02 22:15:08 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 0s. Last read position: chr13:29,523,351
INFO 2026-06-02 22:15:09 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr13:32,770,244
INFO 2026-06-02 22:15:10 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr13:40,560,434
INFO 2026-06-02 22:15:11 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr13:42,964,071
INFO 2026-06-02 22:15:12 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr13:45,340,737
INFO 2026-06-02 22:15:13 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr13:48,347,830
INFO 2026-06-02 22:15:14 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 0s. Last read position: chr13:52,153,955
INFO 2026-06-02 22:15:15 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 0s. Last read position: chr13:73,063,823
INFO 2026-06-02 22:15:16 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 0s. Last read position: chr13:75,853,205
INFO 2026-06-02 22:15:17 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 0s. Last read position: chr13:81,690,431
INFO 2026-06-02 22:15:18 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 0s. Last read position: chr13:98,888,158
INFO 2026-06-02 22:15:19 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr13:102,872,204
INFO 2026-06-02 22:15:19 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 0s. Last read position: chr13:110,508,198
INFO 2026-06-02 22:15:20 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 0s. Last read position: chr13:113,260,741
INFO 2026-06-02 22:15:21 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 0s. Last read position: chr14:20,407,926
INFO 2026-06-02 22:15:22 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 0s. Last read position: chr14:22,564,965
INFO 2026-06-02 22:15:23 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 0s. Last read position: chr14:23,097,933
INFO 2026-06-02 22:15:23 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 0s. Last read position: chr14:24,240,735
INFO 2026-06-02 22:15:24 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 0s. Last read position: chr14:32,093,323
INFO 2026-06-02 22:15:25 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 0s. Last read position: chr14:44,931,448
INFO 2026-06-02 22:15:26 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 0s. Last read position: chr14:51,727,767
INFO 2026-06-02 22:15:26 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 0s. Last read position: chr14:55,351,140
INFO 2026-06-02 22:15:27 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 0s. Last read position: chr14:61,720,520
INFO 2026-06-02 22:15:28 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 0s. Last read position: chr14:64,942,520
INFO 2026-06-02 22:15:29 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 0s. Last read position: chr14:69,116,466
INFO 2026-06-02 22:15:30 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 0s. Last read position: chr14:73,713,091
INFO 2026-06-02 22:15:30 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 0s. Last read position: chr14:75,622,124
INFO 2026-06-02 22:15:31 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 0s. Last read position: chr14:90,268,300
INFO 2026-06-02 22:15:32 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 0s. Last read position: chr14:94,062,441
INFO 2026-06-02 22:15:33 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 0s. Last read position: chr14:100,277,505
INFO 2026-06-02 22:15:34 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 0s. Last read position: chr14:102,050,428
INFO 2026-06-02 22:15:34 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 0s. Last read position: chr14:103,657,648
INFO 2026-06-02 22:15:35 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 0s. Last read position: chr14:104,887,890
INFO 2026-06-02 22:15:36 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 0s. Last read position: chr14:104,946,514
INFO 2026-06-02 22:15:37 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 0s. Last read position: chr14:105,314,867
INFO 2026-06-02 22:15:38 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 0s. Last read position: chr14:105,707,343
INFO 2026-06-02 22:15:39 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,344
INFO 2026-06-02 22:15:40 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr15:22,943,289
INFO 2026-06-02 22:15:41 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr15:30,913,870
INFO 2026-06-02 22:15:42 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr15:34,944,327
INFO 2026-06-02 22:15:43 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr15:40,844,666
INFO 2026-06-02 22:15:44 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr15:41,862,219
INFO 2026-06-02 22:15:45 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 0s. Last read position: chr15:43,596,483
INFO 2026-06-02 22:15:46 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 0s. Last read position: chr15:44,584,209
INFO 2026-06-02 22:15:47 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 0s. Last read position: chr15:50,471,757
INFO 2026-06-02 22:15:48 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 0s. Last read position: chr15:56,631,686
INFO 2026-06-02 22:15:48 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 0s. Last read position: chr15:59,650,718
INFO 2026-06-02 22:15:49 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 0s. Last read position: chr15:63,056,997
INFO 2026-06-02 22:15:50 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 0s. Last read position: chr15:65,607,282
INFO 2026-06-02 22:15:51 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 0s. Last read position: chr15:68,780,099
INFO 2026-06-02 22:15:52 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 0s. Last read position: chr15:72,266,849
INFO 2026-06-02 22:15:53 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr15:74,929,128
INFO 2026-06-02 22:15:54 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr15:77,615,054
INFO 2026-06-02 22:15:55 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr15:82,524,043
INFO 2026-06-02 22:15:56 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr15:85,719,313
INFO 2026-06-02 22:15:58 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr15:90,433,770
INFO 2026-06-02 22:15:59 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 0s. Last read position: chr15:97,970,623
INFO 2026-06-02 22:15:59 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 0s. Last read position: chr16:377,059
INFO 2026-06-02 22:16:00 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 0s. Last read position: chr16:1,315,692
INFO 2026-06-02 22:16:01 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 0s. Last read position: chr16:2,103,375
INFO 2026-06-02 22:16:02 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 0s. Last read position: chr16:2,762,843
INFO 2026-06-02 22:16:03 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 0s. Last read position: chr16:2,772,011
INFO 2026-06-02 22:16:03 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 0s. Last read position: chr16:4,340,291
INFO 2026-06-02 22:16:04 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 0s. Last read position: chr16:10,941,679
INFO 2026-06-02 22:16:05 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr16:14,844,690
INFO 2026-06-02 22:16:06 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr16:15,635,924
INFO 2026-06-02 22:16:08 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr16:16,393,513
INFO 2026-06-02 22:16:09 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 0s. Last read position: chr16:18,554,807
INFO 2026-06-02 22:16:09 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 0s. Last read position: chr16:21,161,271
INFO 2026-06-02 22:16:10 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 0s. Last read position: chr16:21,452,611
INFO 2026-06-02 22:16:11 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 0s. Last read position: chr16:21,837,563
INFO 2026-06-02 22:16:12 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 0s. Last read position: chr16:22,527,874
INFO 2026-06-02 22:16:13 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 0s. Last read position: chr16:22,536,280
INFO 2026-06-02 22:16:14 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 0s. Last read position: chr16:28,379,783
INFO 2026-06-02 22:16:15 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr16:29,382,620
INFO 2026-06-02 22:16:16 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr16:29,807,802
INFO 2026-06-02 22:16:17 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr16:30,225,400
INFO 2026-06-02 22:16:18 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr16:30,958,098
INFO 2026-06-02 22:16:19 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr16:31,190,749
INFO 2026-06-02 22:16:20 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 0s. Last read position: chr16:50,305,572
INFO 2026-06-02 22:16:21 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 0s. Last read position: chr16:57,025,645
INFO 2026-06-02 22:16:22 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 0s. Last read position: chr16:58,543,681
INFO 2026-06-02 22:16:22 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 0s. Last read position: chr16:67,232,106
INFO 2026-06-02 22:16:23 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 0s. Last read position: chr16:68,339,403
INFO 2026-06-02 22:16:24 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 0s. Last read position: chr16:69,693,641
INFO 2026-06-02 22:16:25 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 0s. Last read position: chr16:70,988,401
INFO 2026-06-02 22:16:26 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 0s. Last read position: chr16:74,462,614
INFO 2026-06-02 22:16:26 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 0s. Last read position: chr16:83,032,172
INFO 2026-06-02 22:16:27 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr16:88,715,690
INFO 2026-06-02 22:16:28 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 0s. Last read position: chr16:89,935,566
INFO 2026-06-02 22:16:29 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 0s. Last read position: chr17:1,364,921
INFO 2026-06-02 22:16:30 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 0s. Last read position: chr17:1,800,921
INFO 2026-06-02 22:16:31 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 0s. Last read position: chr17:4,076,963
INFO 2026-06-02 22:16:31 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 0s. Last read position: chr17:5,489,304
INFO 2026-06-02 22:16:33 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,149
INFO 2026-06-02 22:16:34 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr17:8,377,603
INFO 2026-06-02 22:16:35 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr17:17,138,178
INFO 2026-06-02 22:16:36 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr17:21,042,784
INFO 2026-06-02 22:16:37 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr17:29,166,557
INFO 2026-06-02 22:16:38 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr17:32,444,550
INFO 2026-06-02 22:16:39 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr17:37,467,476
INFO 2026-06-02 22:16:41 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr17:39,278,479
INFO 2026-06-02 22:16:42 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr17:40,126,396
INFO 2026-06-02 22:16:43 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr17:41,755,789
INFO 2026-06-02 22:16:44 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr17:42,838,135
INFO 2026-06-02 22:16:45 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr17:44,400,682
INFO 2026-06-02 22:16:46 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr17:46,548,636
INFO 2026-06-02 22:16:47 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr17:48,916,109
INFO 2026-06-02 22:16:48 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,530
INFO 2026-06-02 22:16:50 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,731
INFO 2026-06-02 22:16:51 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr17:50,394,955
INFO 2026-06-02 22:16:52 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr17:58,311,897
INFO 2026-06-02 22:16:53 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr17:59,737,458
INFO 2026-06-02 22:16:54 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr17:64,377,823
INFO 2026-06-02 22:16:55 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr17:68,515,526
INFO 2026-06-02 22:16:56 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr17:75,233,133
INFO 2026-06-02 22:16:58 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr17:75,754,787
INFO 2026-06-02 22:16:59 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr17:76,629,252
INFO 2026-06-02 22:17:00 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr17:80,010,641
INFO 2026-06-02 22:17:01 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 0s. Last read position: chr17:81,511,982
INFO 2026-06-02 22:17:01 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 0s. Last read position: chr17:82,236,772
INFO 2026-06-02 22:17:02 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 0s. Last read position: chr18:3,685,467
INFO 2026-06-02 22:17:03 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 0s. Last read position: chr18:12,794,347
INFO 2026-06-02 22:17:04 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 0s. Last read position: chr18:23,950,148
INFO 2026-06-02 22:17:05 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 0s. Last read position: chr18:31,538,849
INFO 2026-06-02 22:17:05 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 0s. Last read position: chr18:45,954,864
INFO 2026-06-02 22:17:06 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 0s. Last read position: chr18:57,602,447
INFO 2026-06-02 22:17:07 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 0s. Last read position: chr18:74,633,780
INFO 2026-06-02 22:17:08 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 0s. Last read position: chr19:651,833
INFO 2026-06-02 22:17:09 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 0s. Last read position: chr19:1,037,681
INFO 2026-06-02 22:17:10 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 0s. Last read position: chr19:1,418,715
INFO 2026-06-02 22:17:10 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 0s. Last read position: chr19:2,050,832
INFO 2026-06-02 22:17:12 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr19:3,198,888
INFO 2026-06-02 22:17:13 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr19:4,457,627
INFO 2026-06-02 22:17:14 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 0s. Last read position: chr19:5,843,976
INFO 2026-06-02 22:17:14 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 0s. Last read position: chr19:7,395,219
INFO 2026-06-02 22:17:15 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 0s. Last read position: chr19:8,511,649
INFO 2026-06-02 22:17:16 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 0s. Last read position: chr19:10,148,906
INFO 2026-06-02 22:17:17 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 0s. Last read position: chr19:10,772,513
INFO 2026-06-02 22:17:18 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr19:11,436,107
INFO 2026-06-02 22:17:19 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr19:12,792,536
INFO 2026-06-02 22:17:20 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr19:14,106,844
INFO 2026-06-02 22:17:21 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr19:15,239,948
INFO 2026-06-02 22:17:22 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr19:16,185,698
INFO 2026-06-02 22:17:24 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr19:17,727,410
INFO 2026-06-02 22:17:25 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr19:18,539,696
INFO 2026-06-02 22:17:26 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 0s. Last read position: chr19:19,649,788
INFO 2026-06-02 22:17:27 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr19:34,172,658
INFO 2026-06-02 22:17:28 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr19:35,266,465
INFO 2026-06-02 22:17:29 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr19:36,149,578
INFO 2026-06-02 22:17:30 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 0s. Last read position: chr19:38,706,114
INFO 2026-06-02 22:17:31 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 0s. Last read position: chr19:39,177,701
INFO 2026-06-02 22:17:31 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 0s. Last read position: chr19:40,233,756
INFO 2026-06-02 22:17:32 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 0s. Last read position: chr19:41,294,427
INFO 2026-06-02 22:17:33 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 0s. Last read position: chr19:41,710,032
INFO 2026-06-02 22:17:34 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 0s. Last read position: chr19:41,717,567
INFO 2026-06-02 22:17:35 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 0s. Last read position: chr19:41,720,193
INFO 2026-06-02 22:17:36 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr19:41,762,028
INFO 2026-06-02 22:17:37 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 0s. Last read position: chr19:42,290,296
INFO 2026-06-02 22:17:38 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 0s. Last read position: chr19:44,328,282
INFO 2026-06-02 22:17:38 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 0s. Last read position: chr19:45,507,734
INFO 2026-06-02 22:17:40 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr19:46,920,178
INFO 2026-06-02 22:17:41 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr19:48,479,127
INFO 2026-06-02 22:17:42 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr19:49,210,254
INFO 2026-06-02 22:17:43 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr19:49,614,984
INFO 2026-06-02 22:17:44 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 0s. Last read position: chr19:50,259,231
INFO 2026-06-02 22:17:45 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 0s. Last read position: chr19:52,067,121
INFO 2026-06-02 22:17:46 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 0s. Last read position: chr19:54,148,164
INFO 2026-06-02 22:17:46 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 0s. Last read position: chr19:55,112,555
INFO 2026-06-02 22:17:47 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 0s. Last read position: chr19:55,689,352
INFO 2026-06-02 22:17:48 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 0s. Last read position: chr19:58,393,064
INFO 2026-06-02 22:17:49 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 0s. Last read position: chr20:2,116,946
INFO 2026-06-02 22:17:50 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr20:5,115,126
INFO 2026-06-02 22:17:51 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr20:17,629,882
INFO 2026-06-02 22:17:53 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr20:21,339,056
INFO 2026-06-02 22:17:54 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr20:32,196,714
INFO 2026-06-02 22:17:55 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr20:34,534,677
INFO 2026-06-02 22:17:56 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 0s. Last read position: chr20:35,729,320
INFO 2026-06-02 22:17:57 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 0s. Last read position: chr20:38,535,128
INFO 2026-06-02 22:17:59 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr20:44,906,432
INFO 2026-06-02 22:18:00 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr20:46,355,081
INFO 2026-06-02 22:18:02 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr20:50,082,774
INFO 2026-06-02 22:18:03 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr20:57,652,139
INFO 2026-06-02 22:18:04 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 0s. Last read position: chr20:62,309,318
INFO 2026-06-02 22:18:04 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 0s. Last read position: chr20:63,202,347
INFO 2026-06-02 22:18:06 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr21:5,035,862
INFO 2026-06-02 22:18:06 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 0s. Last read position: chr21:8,399,137
INFO 2026-06-02 22:18:07 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr21:24,377,428
INFO 2026-06-02 22:18:09 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr21:32,347,446
INFO 2026-06-02 22:18:10 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr21:33,767,786
INFO 2026-06-02 22:18:11 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr21:38,392,441
INFO 2026-06-02 22:18:12 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr21:42,312,186
INFO 2026-06-02 22:18:13 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr21:44,325,242
INFO 2026-06-02 22:18:14 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr21:46,117,439
INFO 2026-06-02 22:18:15 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr22:19,452,877
INFO 2026-06-02 22:18:16 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr22:23,268,485
INFO 2026-06-02 22:18:17 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr22:29,049,589
INFO 2026-06-02 22:18:18 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr22:30,346,369
INFO 2026-06-02 22:18:19 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,857
INFO 2026-06-02 22:18:21 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr22:37,877,673
INFO 2026-06-02 22:18:21 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 0s. Last read position: chr22:40,315,962
INFO 2026-06-02 22:18:22 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 0s. Last read position: chr22:42,212,202
INFO 2026-06-02 22:18:24 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr22:48,576,453
INFO 2026-06-02 22:18:25 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr22:50,626,745
INFO 2026-06-02 22:18:26 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chrX:11,144,187
INFO 2026-06-02 22:18:27 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 0s. Last read position: chrX:21,978,071
INFO 2026-06-02 22:18:28 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chrX:40,073,780
INFO 2026-06-02 22:18:29 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 0s. Last read position: chrX:45,061,506
INFO 2026-06-02 22:18:30 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 0s. Last read position: chrX:48,478,657
INFO 2026-06-02 22:18:31 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chrX:52,907,461
INFO 2026-06-02 22:18:32 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chrX:53,604,753
INFO 2026-06-02 22:18:33 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 0s. Last read position: chrX:70,498,530
INFO 2026-06-02 22:18:33 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 0s. Last read position: chrX:72,272,623
INFO 2026-06-02 22:18:34 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 0s. Last read position: chrX:78,109,895
INFO 2026-06-02 22:18:35 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 0s. Last read position: chrX:102,602,191
INFO 2026-06-02 22:18:36 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 0s. Last read position: chrX:119,789,910
INFO 2026-06-02 22:18:37 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 0s. Last read position: chrX:133,671,159
INFO 2026-06-02 22:18:38 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 0s. Last read position: chrX:153,787,472
INFO 2026-06-02 22:18:38 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 0s. Last read position: chrX:154,361,482
INFO 2026-06-02 22:18:39 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chrX:155,458,079
INFO 2026-06-02 22:18:40 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 0s. Last read position: GL000220.1:155,305
INFO 2026-06-02 22:18:41 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: KI270733.1:174,733
INFO 2026-06-02 22:18:42 RExecutor Executing R script via command: Rscript /tmp/script18177027831671912099.R /tmp/nxf.XXXXsEyibD/659_bTq-T1-TRNA-1_B23MHV2LT4_1_collectinsertsize.txt /tmp/nxf.XXXXsEyibD/659_bTq-T1-TRNA-1_B23MHV2LT4_1_collectinsertsize.pdf 659_bTq-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
ERROR 2026-06-02 22:18:42 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 22:18:42 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 22:18:42 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 22:18:42 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-02 22:18:42 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-02 22:18:42 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-02 22:18:42 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-02 22:18:42 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-02 22:18:42 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-02 22:18:42 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-02 22:18:42 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-02 22:18:42 ProcessExecutor null device
INFO 2026-06-02 22:18:42 ProcessExecutor 1
ERROR 2026-06-02 22:18:42 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
[Tue Jun 02 22:18:43 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 8.93 minutes.
Runtime.totalMemory()=373293056