/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
INFO 2026-06-02 22:06:52 RExecutor Executing R script via command: Rscript /tmp/script7513107577547894483.R
ERROR 2026-06-02 22:06:52 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 22:06:52 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 22:06:52 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 22:06:52 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-02 22:06:52 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-02 22:06:52 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-02 22:06:52 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-02 22:06:52 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-02 22:06:52 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-02 22:06:52 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-02 22:06:52 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-02 22:06:52 ProcessExecutor [1] "Checking if R is installed"
ERROR 2026-06-02 22:06:52 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
Jun 02, 2026 10:06:52 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Tue Jun 02 22:06:52 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE 659_bua-T1-TRNA-1_B23MHV2LT4_1_collectinsertsize.pdf --INPUT 659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bua-T1-TRNA-1_B23MHV2LT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Tue Jun 02 22:06:52 GMT 2026] Executing as ?@nf-ed43983b4b3dca7f21dd6559f7c428f1-fc0f9-zpfjg on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
INFO 2026-06-02 22:06:53 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,232,830
INFO 2026-06-02 22:06:54 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 0s. Last read position: chr1:1,646,057
INFO 2026-06-02 22:06:55 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 0s. Last read position: chr1:6,532,669
INFO 2026-06-02 22:06:56 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 0s. Last read position: chr1:8,364,824
INFO 2026-06-02 22:06:57 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 0s. Last read position: chr1:10,119,588
INFO 2026-06-02 22:06:57 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 0s. Last read position: chr1:11,964,706
INFO 2026-06-02 22:06:58 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 0s. Last read position: chr1:15,932,041
INFO 2026-06-02 22:06:59 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 0s. Last read position: chr1:19,096,544
INFO 2026-06-02 22:07:00 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 0s. Last read position: chr1:20,637,939
INFO 2026-06-02 22:07:01 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 0s. Last read position: chr1:21,844,265
INFO 2026-06-02 22:07:01 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 0s. Last read position: chr1:22,661,254
INFO 2026-06-02 22:07:02 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 0s. Last read position: chr1:24,669,223
INFO 2026-06-02 22:07:03 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 0s. Last read position: chr1:26,772,953
INFO 2026-06-02 22:07:04 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 0s. Last read position: chr1:28,150,706
INFO 2026-06-02 22:07:05 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 0s. Last read position: chr1:31,668,829
INFO 2026-06-02 22:07:05 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 0s. Last read position: chr1:32,366,611
INFO 2026-06-02 22:07:06 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 0s. Last read position: chr1:35,192,636
INFO 2026-06-02 22:07:07 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 0s. Last read position: chr1:36,455,847
INFO 2026-06-02 22:07:08 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 0s. Last read position: chr1:39,447,818
INFO 2026-06-02 22:07:09 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 0s. Last read position: chr1:41,580,185
INFO 2026-06-02 22:07:10 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 0s. Last read position: chr1:43,971,092
INFO 2026-06-02 22:07:10 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 0s. Last read position: chr1:46,032,238
INFO 2026-06-02 22:07:11 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 0s. Last read position: chr1:52,353,630
INFO 2026-06-02 22:07:12 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 0s. Last read position: chr1:58,782,937
INFO 2026-06-02 22:07:13 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 0s. Last read position: chr1:67,424,249
INFO 2026-06-02 22:07:14 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 0s. Last read position: chr1:78,662,738
INFO 2026-06-02 22:07:15 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 0s. Last read position: chr1:86,031,877
INFO 2026-06-02 22:07:15 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 0s. Last read position: chr1:93,210,823
INFO 2026-06-02 22:07:16 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 0s. Last read position: chr1:102,878,047
INFO 2026-06-02 22:07:17 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 0s. Last read position: chr1:109,397,769
INFO 2026-06-02 22:07:18 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 0s. Last read position: chr1:112,688,968
INFO 2026-06-02 22:07:19 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 0s. Last read position: chr1:114,405,680
INFO 2026-06-02 22:07:20 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 0s. Last read position: chr1:118,884,820
INFO 2026-06-02 22:07:20 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 0s. Last read position: chr1:119,940,579
INFO 2026-06-02 22:07:21 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 0s. Last read position: chr1:120,813,967
INFO 2026-06-02 22:07:22 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 0s. Last read position: chr1:145,900,159
INFO 2026-06-02 22:07:23 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 0s. Last read position: chr1:147,179,139
INFO 2026-06-02 22:07:24 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 0s. Last read position: chr1:148,615,803
INFO 2026-06-02 22:07:25 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 0s. Last read position: chr1:149,842,281
INFO 2026-06-02 22:07:25 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 0s. Last read position: chr1:150,364,656
INFO 2026-06-02 22:07:26 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 0s. Last read position: chr1:150,836,397
INFO 2026-06-02 22:07:27 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 0s. Last read position: chr1:152,213,641
INFO 2026-06-02 22:07:28 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 0s. Last read position: chr1:153,936,713
INFO 2026-06-02 22:07:29 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 0s. Last read position: chr1:154,183,049
INFO 2026-06-02 22:07:29 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 0s. Last read position: chr1:154,967,984
INFO 2026-06-02 22:07:30 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 0s. Last read position: chr1:155,717,106
INFO 2026-06-02 22:07:31 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 0s. Last read position: chr1:156,130,643
INFO 2026-06-02 22:07:32 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 0s. Last read position: chr1:156,138,802
INFO 2026-06-02 22:07:33 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 0s. Last read position: chr1:156,672,488
INFO 2026-06-02 22:07:33 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 0s. Last read position: chr1:158,087,836
INFO 2026-06-02 22:07:34 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 0s. Last read position: chr1:160,332,465
INFO 2026-06-02 22:07:35 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 0s. Last read position: chr1:161,542,576
INFO 2026-06-02 22:07:36 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 0s. Last read position: chr1:166,858,121
INFO 2026-06-02 22:07:37 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 0s. Last read position: chr1:171,557,544
INFO 2026-06-02 22:07:38 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 0s. Last read position: chr1:178,458,387
INFO 2026-06-02 22:07:38 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 0s. Last read position: chr1:182,603,256
INFO 2026-06-02 22:07:39 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 0s. Last read position: chr1:184,708,275
INFO 2026-06-02 22:07:40 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 0s. Last read position: chr1:186,306,880
INFO 2026-06-02 22:07:41 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 0s. Last read position: chr1:186,307,338
INFO 2026-06-02 22:07:42 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 0s. Last read position: chr1:186,308,488
INFO 2026-06-02 22:07:42 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 0s. Last read position: chr1:186,350,325
INFO 2026-06-02 22:07:43 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 0s. Last read position: chr1:196,726,489
INFO 2026-06-02 22:07:44 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 0s. Last read position: chr1:201,809,984
INFO 2026-06-02 22:07:45 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 0s. Last read position: chr1:203,800,013
INFO 2026-06-02 22:07:46 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 0s. Last read position: chr1:206,406,511
INFO 2026-06-02 22:07:46 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 0s. Last read position: chr1:214,642,283
INFO 2026-06-02 22:07:47 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 0s. Last read position: chr1:223,747,075
INFO 2026-06-02 22:07:48 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 0s. Last read position: chr1:226,736,653
INFO 2026-06-02 22:07:49 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 0s. Last read position: chr1:231,528,802
INFO 2026-06-02 22:07:49 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 0s. Last read position: chr1:235,664,466
INFO 2026-06-02 22:07:50 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 0s. Last read position: chr1:243,200,548
INFO 2026-06-02 22:07:51 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 0s. Last read position: chr1:246,744,108
INFO 2026-06-02 22:07:52 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 0s. Last read position: chr2:6,849,861
INFO 2026-06-02 22:07:53 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 0s. Last read position: chr2:15,277,026
INFO 2026-06-02 22:07:53 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 0s. Last read position: chr2:26,188,152
INFO 2026-06-02 22:07:54 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 0s. Last read position: chr2:27,458,133
INFO 2026-06-02 22:07:55 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,258
INFO 2026-06-02 22:07:56 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,264
INFO 2026-06-02 22:07:56 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,406
INFO 2026-06-02 22:07:57 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 0s. Last read position: chr2:37,213,888
INFO 2026-06-02 22:07:58 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 0s. Last read position: chr2:43,899,477
INFO 2026-06-02 22:07:59 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 0s. Last read position: chr2:54,629,208
INFO 2026-06-02 22:07:59 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 0s. Last read position: chr2:55,349,582
INFO 2026-06-02 22:08:00 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 0s. Last read position: chr2:65,253,728
INFO 2026-06-02 22:08:01 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 0s. Last read position: chr2:71,426,535
INFO 2026-06-02 22:08:02 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 0s. Last read position: chr2:84,906,008
INFO 2026-06-02 22:08:02 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 0s. Last read position: chr2:95,893,566
INFO 2026-06-02 22:08:03 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 0s. Last read position: chr2:99,319,799
INFO 2026-06-02 22:08:04 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 0s. Last read position: chr2:106,423,383
INFO 2026-06-02 22:08:05 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 0s. Last read position: chr2:108,767,854
INFO 2026-06-02 22:08:05 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 0s. Last read position: chr2:110,535,202
INFO 2026-06-02 22:08:06 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 0s. Last read position: chr2:112,647,136
INFO 2026-06-02 22:08:07 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 0s. Last read position: chr2:127,286,874
INFO 2026-06-02 22:08:08 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 0s. Last read position: chr2:135,983,423
INFO 2026-06-02 22:08:08 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 0s. Last read position: chr2:156,326,896
INFO 2026-06-02 22:08:09 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 0s. Last read position: chr2:169,604,186
INFO 2026-06-02 22:08:10 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 0s. Last read position: chr2:174,585,564
INFO 2026-06-02 22:08:11 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 0s. Last read position: chr2:181,457,733
INFO 2026-06-02 22:08:11 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 0s. Last read position: chr2:188,974,599
INFO 2026-06-02 22:08:12 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 0s. Last read position: chr2:188,995,696
INFO 2026-06-02 22:08:13 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 0s. Last read position: chr2:189,005,400
INFO 2026-06-02 22:08:14 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 0s. Last read position: chr2:189,034,943
INFO 2026-06-02 22:08:14 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 0s. Last read position: chr2:189,752,693
INFO 2026-06-02 22:08:15 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 0s. Last read position: chr2:196,139,790
INFO 2026-06-02 22:08:16 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 0s. Last read position: chr2:200,822,180
INFO 2026-06-02 22:08:17 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 0s. Last read position: chr2:206,126,803
INFO 2026-06-02 22:08:17 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 0s. Last read position: chr2:215,361,552
INFO 2026-06-02 22:08:18 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 0s. Last read position: chr2:215,364,958
INFO 2026-06-02 22:08:19 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 0s. Last read position: chr2:215,370,391
INFO 2026-06-02 22:08:20 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 0s. Last read position: chr2:215,372,126
INFO 2026-06-02 22:08:20 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 0s. Last read position: chr2:215,372,341
INFO 2026-06-02 22:08:21 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 0s. Last read position: chr2:215,375,338
INFO 2026-06-02 22:08:22 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 0s. Last read position: chr2:215,376,548
INFO 2026-06-02 22:08:23 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 0s. Last read position: chr2:215,379,194
INFO 2026-06-02 22:08:23 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 0s. Last read position: chr2:215,382,225
INFO 2026-06-02 22:08:24 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 0s. Last read position: chr2:215,384,177
INFO 2026-06-02 22:08:25 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 0s. Last read position: chr2:215,386,955
INFO 2026-06-02 22:08:26 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 0s. Last read position: chr2:215,393,136
INFO 2026-06-02 22:08:26 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 0s. Last read position: chr2:215,397,712
INFO 2026-06-02 22:08:27 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 0s. Last read position: chr2:215,404,588
INFO 2026-06-02 22:08:28 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 0s. Last read position: chr2:215,407,271
INFO 2026-06-02 22:08:29 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 0s. Last read position: chr2:215,409,618
INFO 2026-06-02 22:08:29 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 0s. Last read position: chr2:215,414,837
INFO 2026-06-02 22:08:30 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 0s. Last read position: chr2:215,422,101
INFO 2026-06-02 22:08:31 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 0s. Last read position: chr2:215,424,233
INFO 2026-06-02 22:08:32 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 0s. Last read position: chr2:215,428,321
INFO 2026-06-02 22:08:32 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 0s. Last read position: chr2:215,433,414
INFO 2026-06-02 22:08:33 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 0s. Last read position: chr2:216,500,038
INFO 2026-06-02 22:08:34 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 0s. Last read position: chr2:216,679,049
INFO 2026-06-02 22:08:35 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 0s. Last read position: chr2:218,265,108
INFO 2026-06-02 22:08:35 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 0s. Last read position: chr2:222,918,065
INFO 2026-06-02 22:08:36 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 0s. Last read position: chr2:230,875,687
INFO 2026-06-02 22:08:37 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 0s. Last read position: chr2:233,511,746
INFO 2026-06-02 22:08:38 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 0s. Last read position: chr2:237,340,588
INFO 2026-06-02 22:08:38 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 0s. Last read position: chr2:237,350,157
INFO 2026-06-02 22:08:39 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 0s. Last read position: chr2:237,363,313
INFO 2026-06-02 22:08:40 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 0s. Last read position: chr2:237,371,890
INFO 2026-06-02 22:08:41 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 0s. Last read position: chr2:237,378,825
INFO 2026-06-02 22:08:42 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 0s. Last read position: chr2:237,763,826
INFO 2026-06-02 22:08:42 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 0s. Last read position: chr2:241,264,569
INFO 2026-06-02 22:08:43 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 0s. Last read position: chr3:9,445,123
INFO 2026-06-02 22:08:44 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 0s. Last read position: chr3:12,600,257
INFO 2026-06-02 22:08:45 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 0s. Last read position: chr3:24,143,564
INFO 2026-06-02 22:08:45 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 0s. Last read position: chr3:36,738,402
INFO 2026-06-02 22:08:46 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 0s. Last read position: chr3:40,529,327
INFO 2026-06-02 22:08:47 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 0s. Last read position: chr3:45,973,127
INFO 2026-06-02 22:08:48 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 0s. Last read position: chr3:47,917,082
INFO 2026-06-02 22:08:48 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 0s. Last read position: chr3:49,110,710
INFO 2026-06-02 22:08:49 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 0s. Last read position: chr3:49,909,174
INFO 2026-06-02 22:08:50 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 0s. Last read position: chr3:52,206,632
INFO 2026-06-02 22:08:51 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 0s. Last read position: chr3:53,228,087
INFO 2026-06-02 22:08:51 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 0s. Last read position: chr3:63,995,986
INFO 2026-06-02 22:08:52 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 0s. Last read position: chr3:75,214,975
INFO 2026-06-02 22:08:53 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 0s. Last read position: chr3:98,800,675
INFO 2026-06-02 22:08:54 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 0s. Last read position: chr3:101,459,041
INFO 2026-06-02 22:08:55 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 0s. Last read position: chr3:112,605,316
INFO 2026-06-02 22:08:55 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 0s. Last read position: chr3:120,596,439
INFO 2026-06-02 22:08:56 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 0s. Last read position: chr3:124,796,511
INFO 2026-06-02 22:08:57 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 0s. Last read position: chr3:128,098,932
INFO 2026-06-02 22:08:58 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 0s. Last read position: chr3:129,571,509
INFO 2026-06-02 22:08:58 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 0s. Last read position: chr3:136,151,192
INFO 2026-06-02 22:08:59 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 0s. Last read position: chr3:146,072,563
INFO 2026-06-02 22:09:00 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 0s. Last read position: chr3:151,213,996
INFO 2026-06-02 22:09:01 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 0s. Last read position: chr3:160,536,813
INFO 2026-06-02 22:09:01 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 0s. Last read position: chr3:175,097,165
INFO 2026-06-02 22:09:02 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 0s. Last read position: chr3:184,170,662
INFO 2026-06-02 22:09:03 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 0s. Last read position: chr3:185,645,492
INFO 2026-06-02 22:09:04 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 0s. Last read position: chr3:194,137,803
INFO 2026-06-02 22:09:05 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 0s. Last read position: chr3:197,848,009
INFO 2026-06-02 22:09:06 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 0s. Last read position: chr4:2,928,559
INFO 2026-06-02 22:09:06 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 0s. Last read position: chr4:16,502,546
INFO 2026-06-02 22:09:07 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 0s. Last read position: chr4:39,454,198
INFO 2026-06-02 22:09:08 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 0s. Last read position: chr4:54,288,871
INFO 2026-06-02 22:09:09 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 0s. Last read position: chr4:73,091,203
INFO 2026-06-02 22:09:10 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 0s. Last read position: chr4:82,427,544
INFO 2026-06-02 22:09:11 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 0s. Last read position: chr4:87,980,081
INFO 2026-06-02 22:09:12 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 0s. Last read position: chr4:102,580,598
INFO 2026-06-02 22:09:12 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 0s. Last read position: chr4:112,539,940
INFO 2026-06-02 22:09:13 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 0s. Last read position: chr4:125,318,519
INFO 2026-06-02 22:09:14 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 0s. Last read position: chr4:143,195,792
INFO 2026-06-02 22:09:15 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 0s. Last read position: chr4:163,528,758
INFO 2026-06-02 22:09:15 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 0s. Last read position: chr4:186,162,842
INFO 2026-06-02 22:09:16 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 0s. Last read position: chr4:186,708,795
INFO 2026-06-02 22:09:17 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 0s. Last read position: chr5:10,429,999
INFO 2026-06-02 22:09:18 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 0s. Last read position: chr5:14,488,131
INFO 2026-06-02 22:09:18 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 0s. Last read position: chr5:32,591,556
INFO 2026-06-02 22:09:19 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 0s. Last read position: chr5:40,681,214
INFO 2026-06-02 22:09:20 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 0s. Last read position: chr5:55,269,415
INFO 2026-06-02 22:09:21 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 0s. Last read position: chr5:65,591,740
INFO 2026-06-02 22:09:21 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 0s. Last read position: chr5:72,197,401
INFO 2026-06-02 22:09:22 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 0s. Last read position: chr5:80,055,973
INFO 2026-06-02 22:09:23 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 0s. Last read position: chr5:83,512,353
INFO 2026-06-02 22:09:24 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 0s. Last read position: chr5:83,580,014
INFO 2026-06-02 22:09:24 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 0s. Last read position: chr5:102,950,740
INFO 2026-06-02 22:09:25 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 0s. Last read position: chr5:124,644,482
INFO 2026-06-02 22:09:26 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 0s. Last read position: chr5:134,146,205
INFO 2026-06-02 22:09:27 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 0s. Last read position: chr5:138,391,961
INFO 2026-06-02 22:09:27 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 0s. Last read position: chr5:138,473,836
INFO 2026-06-02 22:09:28 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 0s. Last read position: chr5:141,009,638
INFO 2026-06-02 22:09:29 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 0s. Last read position: chr5:142,314,647
INFO 2026-06-02 22:09:30 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 0s. Last read position: chr5:149,550,053
INFO 2026-06-02 22:09:31 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 0s. Last read position: chr5:150,119,494
INFO 2026-06-02 22:09:31 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 0s. Last read position: chr5:150,129,899
INFO 2026-06-02 22:09:32 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 0s. Last read position: chr5:150,135,718
INFO 2026-06-02 22:09:33 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 0s. Last read position: chr5:150,406,319
INFO 2026-06-02 22:09:34 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 0s. Last read position: chr5:151,663,463
INFO 2026-06-02 22:09:34 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 0s. Last read position: chr5:154,924,478
INFO 2026-06-02 22:09:35 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 0s. Last read position: chr5:171,390,098
INFO 2026-06-02 22:09:36 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 0s. Last read position: chr5:172,768,849
INFO 2026-06-02 22:09:37 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 0s. Last read position: chr5:177,492,644
INFO 2026-06-02 22:09:37 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 0s. Last read position: chr5:179,765,762
INFO 2026-06-02 22:09:38 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 0s. Last read position: chr5:179,836,953
INFO 2026-06-02 22:09:39 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 0s. Last read position: chr6:4,133,548
INFO 2026-06-02 22:09:40 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 0s. Last read position: chr6:16,129,257
INFO 2026-06-02 22:09:40 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 0s. Last read position: chr6:26,123,501
INFO 2026-06-02 22:09:41 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 0s. Last read position: chr6:26,637,626
INFO 2026-06-02 22:09:42 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 0s. Last read position: chr6:29,830,392
INFO 2026-06-02 22:09:43 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 0s. Last read position: chr6:30,649,706
INFO 2026-06-02 22:09:43 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 0s. Last read position: chr6:31,355,380
INFO 2026-06-02 22:09:44 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 0s. Last read position: chr6:31,647,792
INFO 2026-06-02 22:09:45 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 0s. Last read position: chr6:31,816,849
INFO 2026-06-02 22:09:45 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 0s. Last read position: chr6:31,828,662
INFO 2026-06-02 22:09:46 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 0s. Last read position: chr6:31,962,455
INFO 2026-06-02 22:09:47 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 0s. Last read position: chr6:32,976,339
INFO 2026-06-02 22:09:48 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 0s. Last read position: chr6:33,432,740
INFO 2026-06-02 22:09:48 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 0s. Last read position: chr6:38,592,614
INFO 2026-06-02 22:09:49 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 0s. Last read position: chr6:42,965,306
INFO 2026-06-02 22:09:50 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 0s. Last read position: chr6:43,777,482
INFO 2026-06-02 22:09:51 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 0s. Last read position: chr6:52,264,636
INFO 2026-06-02 22:09:52 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 0s. Last read position: chr6:63,711,639
INFO 2026-06-02 22:09:52 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 0s. Last read position: chr6:75,177,685
INFO 2026-06-02 22:09:53 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 0s. Last read position: chr6:84,760,279
INFO 2026-06-02 22:09:54 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 0s. Last read position: chr6:93,358,302
INFO 2026-06-02 22:09:55 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 0s. Last read position: chr6:109,727,224
INFO 2026-06-02 22:09:56 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 0s. Last read position: chr6:116,453,395
INFO 2026-06-02 22:09:56 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 0s. Last read position: chr6:130,869,662
INFO 2026-06-02 22:09:57 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 0s. Last read position: chr6:135,466,161
INFO 2026-06-02 22:09:58 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 0s. Last read position: chr6:144,421,920
INFO 2026-06-02 22:09:59 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 0s. Last read position: chr6:150,840,617
INFO 2026-06-02 22:10:00 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 0s. Last read position: chr6:158,452,240
INFO 2026-06-02 22:10:00 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 0s. Last read position: chr6:161,091,515
INFO 2026-06-02 22:10:01 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 0s. Last read position: chr6:169,225,168
INFO 2026-06-02 22:10:02 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 0s. Last read position: chr7:1,437,888
INFO 2026-06-02 22:10:03 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 0s. Last read position: chr7:4,682,560
INFO 2026-06-02 22:10:03 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 0s. Last read position: chr7:5,421,182
INFO 2026-06-02 22:10:04 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 0s. Last read position: chr7:5,528,592
INFO 2026-06-02 22:10:05 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 0s. Last read position: chr7:6,149,840
INFO 2026-06-02 22:10:06 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 0s. Last read position: chr7:13,931,532
INFO 2026-06-02 22:10:07 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 0s. Last read position: chr7:23,246,801
INFO 2026-06-02 22:10:07 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 0s. Last read position: chr7:28,955,712
INFO 2026-06-02 22:10:08 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 0s. Last read position: chr7:33,336,479
INFO 2026-06-02 22:10:09 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 0s. Last read position: chr7:42,025,338
INFO 2026-06-02 22:10:10 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 0s. Last read position: chr7:44,208,146
INFO 2026-06-02 22:10:11 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 0s. Last read position: chr7:47,344,755
INFO 2026-06-02 22:10:11 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 0s. Last read position: chr7:55,205,366
INFO 2026-06-02 22:10:12 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 0s. Last read position: chr7:72,942,472
INFO 2026-06-02 22:10:13 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 0s. Last read position: chr7:74,882,939
INFO 2026-06-02 22:10:14 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 0s. Last read position: chr7:76,303,984
INFO 2026-06-02 22:10:15 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 0s. Last read position: chr7:91,265,134
INFO 2026-06-02 22:10:15 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 0s. Last read position: chr7:94,400,225
INFO 2026-06-02 22:10:16 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 0s. Last read position: chr7:94,413,732
INFO 2026-06-02 22:10:17 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 0s. Last read position: chr7:94,427,740
INFO 2026-06-02 22:10:18 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 0s. Last read position: chr7:98,224,924
INFO 2026-06-02 22:10:19 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 0s. Last read position: chr7:100,430,547
INFO 2026-06-02 22:10:19 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 0s. Last read position: chr7:101,135,795
INFO 2026-06-02 22:10:20 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 0s. Last read position: chr7:102,600,280
INFO 2026-06-02 22:10:21 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 0s. Last read position: chr7:107,600,430
INFO 2026-06-02 22:10:22 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 0s. Last read position: chr7:112,336,144
INFO 2026-06-02 22:10:22 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 0s. Last read position: chr7:127,929,267
INFO 2026-06-02 22:10:23 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 0s. Last read position: chr7:130,497,999
INFO 2026-06-02 22:10:24 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 0s. Last read position: chr7:138,583,884
INFO 2026-06-02 22:10:25 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 0s. Last read position: chr7:143,383,191
INFO 2026-06-02 22:10:26 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 0s. Last read position: chr7:151,077,219
INFO 2026-06-02 22:10:27 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 0s. Last read position: chr7:158,773,298
INFO 2026-06-02 22:10:27 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 0s. Last read position: chr8:11,850,911
INFO 2026-06-02 22:10:28 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 0s. Last read position: chr8:18,935,813
INFO 2026-06-02 22:10:29 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 0s. Last read position: chr8:22,621,450
INFO 2026-06-02 22:10:30 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 0s. Last read position: chr8:25,433,397
INFO 2026-06-02 22:10:30 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 0s. Last read position: chr8:33,389,757
INFO 2026-06-02 22:10:31 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 0s. Last read position: chr8:38,414,169
INFO 2026-06-02 22:10:32 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 0s. Last read position: chr8:38,819,889
INFO 2026-06-02 22:10:33 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 0s. Last read position: chr8:43,196,979
INFO 2026-06-02 22:10:34 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 0s. Last read position: chr8:56,167,296
INFO 2026-06-02 22:10:34 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 0s. Last read position: chr8:69,604,688
INFO 2026-06-02 22:10:35 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 0s. Last read position: chr8:78,666,120
INFO 2026-06-02 22:10:36 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 0s. Last read position: chr8:94,543,872
INFO 2026-06-02 22:10:37 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 0s. Last read position: chr8:100,712,748
INFO 2026-06-02 22:10:38 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 0s. Last read position: chr8:104,509,038
INFO 2026-06-02 22:10:38 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 0s. Last read position: chr8:121,628,849
INFO 2026-06-02 22:10:39 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 0s. Last read position: chr8:133,246,642
INFO 2026-06-02 22:10:40 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 0s. Last read position: chr8:143,589,929
INFO 2026-06-02 22:10:41 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 0s. Last read position: chr8:143,927,305
INFO 2026-06-02 22:10:41 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 0s. Last read position: chr8:144,360,086
INFO 2026-06-02 22:10:42 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 0s. Last read position: chr9:6,792,987
INFO 2026-06-02 22:10:43 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 0s. Last read position: chr9:21,968,222
INFO 2026-06-02 22:10:44 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 0s. Last read position: chr9:35,059,540
INFO 2026-06-02 22:10:44 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 0s. Last read position: chr9:37,518,301
INFO 2026-06-02 22:10:45 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 0s. Last read position: chr9:85,013,896
INFO 2026-06-02 22:10:46 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 0s. Last read position: chr9:94,760,011
INFO 2026-06-02 22:10:47 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 0s. Last read position: chr9:106,935,566
INFO 2026-06-02 22:10:48 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 0s. Last read position: chr9:114,250,641
INFO 2026-06-02 22:10:48 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 0s. Last read position: chr9:121,113,518
INFO 2026-06-02 22:10:49 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 0s. Last read position: chr9:125,238,284
INFO 2026-06-02 22:10:50 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 0s. Last read position: chr9:127,826,607
INFO 2026-06-02 22:10:51 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 0s. Last read position: chr9:128,617,636
INFO 2026-06-02 22:10:51 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 0s. Last read position: chr9:130,878,545
INFO 2026-06-02 22:10:52 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 0s. Last read position: chr9:133,110,192
INFO 2026-06-02 22:10:53 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 0s. Last read position: chr9:134,810,263
INFO 2026-06-02 22:10:54 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 0s. Last read position: chr9:136,503,204
INFO 2026-06-02 22:10:54 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 0s. Last read position: chr10:221,209
INFO 2026-06-02 22:10:55 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 0s. Last read position: chr10:13,659,366
INFO 2026-06-02 22:10:56 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 0s. Last read position: chr10:26,765,229
INFO 2026-06-02 22:10:57 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 0s. Last read position: chr10:32,034,028
INFO 2026-06-02 22:10:57 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 0s. Last read position: chr10:43,155,167
INFO 2026-06-02 22:10:58 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 0s. Last read position: chr10:58,789,748
INFO 2026-06-02 22:10:59 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 0s. Last read position: chr10:69,343,839
INFO 2026-06-02 22:11:00 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 0s. Last read position: chr10:73,799,446
INFO 2026-06-02 22:11:01 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 0s. Last read position: chr10:86,943,802
INFO 2026-06-02 22:11:01 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 0s. Last read position: chr10:95,621,041
INFO 2026-06-02 22:11:02 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 0s. Last read position: chr10:101,799,033
INFO 2026-06-02 22:11:03 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 0s. Last read position: chr10:109,680,770
INFO 2026-06-02 22:11:04 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 0s. Last read position: chr10:122,428,299
INFO 2026-06-02 22:11:05 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 0s. Last read position: chr11:205,357
INFO 2026-06-02 22:11:05 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 0s. Last read position: chr11:319,931
INFO 2026-06-02 22:11:06 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 0s. Last read position: chr11:791,858
INFO 2026-06-02 22:11:07 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 0s. Last read position: chr11:2,132,940
INFO 2026-06-02 22:11:08 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 0s. Last read position: chr11:2,133,546
INFO 2026-06-02 22:11:08 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 0s. Last read position: chr11:2,395,015
INFO 2026-06-02 22:11:09 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 0s. Last read position: chr11:6,615,521
INFO 2026-06-02 22:11:10 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 0s. Last read position: chr11:9,576,237
INFO 2026-06-02 22:11:11 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 0s. Last read position: chr11:14,517,886
INFO 2026-06-02 22:11:12 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 0s. Last read position: chr11:31,432,441
INFO 2026-06-02 22:11:12 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 0s. Last read position: chr11:35,221,690
INFO 2026-06-02 22:11:13 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 0s. Last read position: chr11:46,682,170
INFO 2026-06-02 22:11:14 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 0s. Last read position: chr11:57,236,674
INFO 2026-06-02 22:11:15 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 0s. Last read position: chr11:58,527,620
INFO 2026-06-02 22:11:15 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 0s. Last read position: chr11:61,965,009
INFO 2026-06-02 22:11:16 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 0s. Last read position: chr11:62,595,339
INFO 2026-06-02 22:11:17 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 0s. Last read position: chr11:63,974,722
INFO 2026-06-02 22:11:18 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 0s. Last read position: chr11:64,878,321
INFO 2026-06-02 22:11:19 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 0s. Last read position: chr11:65,553,753
INFO 2026-06-02 22:11:19 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 0s. Last read position: chr11:65,868,297
INFO 2026-06-02 22:11:20 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 0s. Last read position: chr11:66,437,102
INFO 2026-06-02 22:11:21 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 0s. Last read position: chr11:68,036,332
INFO 2026-06-02 22:11:22 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 0s. Last read position: chr11:70,153,055
INFO 2026-06-02 22:11:22 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 0s. Last read position: chr11:72,712,445
INFO 2026-06-02 22:11:23 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 0s. Last read position: chr11:75,566,926
INFO 2026-06-02 22:11:24 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 0s. Last read position: chr11:78,250,220
INFO 2026-06-02 22:11:25 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 0s. Last read position: chr11:94,821,643
INFO 2026-06-02 22:11:25 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 0s. Last read position: chr11:102,863,021
INFO 2026-06-02 22:11:26 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 0s. Last read position: chr11:112,094,836
INFO 2026-06-02 22:11:27 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 0s. Last read position: chr11:118,504,163
INFO 2026-06-02 22:11:28 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 0s. Last read position: chr11:119,285,251
INFO 2026-06-02 22:11:28 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 0s. Last read position: chr11:124,756,251
INFO 2026-06-02 22:11:29 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 0s. Last read position: chr11:133,921,294
INFO 2026-06-02 22:11:30 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 0s. Last read position: chr12:884,190
INFO 2026-06-02 22:11:31 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 0s. Last read position: chr12:3,281,763
INFO 2026-06-02 22:11:32 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 0s. Last read position: chr12:6,587,478
INFO 2026-06-02 22:11:32 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 0s. Last read position: chr12:6,933,950
INFO 2026-06-02 22:11:33 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 0s. Last read position: chr12:7,921,607
INFO 2026-06-02 22:11:34 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 0s. Last read position: chr12:9,090,392
INFO 2026-06-02 22:11:35 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 0s. Last read position: chr12:11,869,249
INFO 2026-06-02 22:11:35 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 0s. Last read position: chr12:15,882,710
INFO 2026-06-02 22:11:36 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 0s. Last read position: chr12:26,064,840
INFO 2026-06-02 22:11:37 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 0s. Last read position: chr12:32,731,387
INFO 2026-06-02 22:11:38 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 0s. Last read position: chr12:47,797,038
INFO 2026-06-02 22:11:39 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 0s. Last read position: chr12:49,051,108
INFO 2026-06-02 22:11:39 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 0s. Last read position: chr12:49,185,166
INFO 2026-06-02 22:11:40 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 0s. Last read position: chr12:49,666,157
INFO 2026-06-02 22:11:41 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 0s. Last read position: chr12:51,913,166
INFO 2026-06-02 22:11:42 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 0s. Last read position: chr12:53,022,537
INFO 2026-06-02 22:11:42 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 0s. Last read position: chr12:53,461,053
INFO 2026-06-02 22:11:43 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 0s. Last read position: chr12:54,283,811
INFO 2026-06-02 22:11:44 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 0s. Last read position: chr12:55,819,406
INFO 2026-06-02 22:11:45 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 0s. Last read position: chr12:56,310,960
INFO 2026-06-02 22:11:45 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 0s. Last read position: chr12:56,688,067
INFO 2026-06-02 22:11:46 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 0s. Last read position: chr12:57,099,346
INFO 2026-06-02 22:11:47 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 0s. Last read position: chr12:57,178,536
INFO 2026-06-02 22:11:48 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 0s. Last read position: chr12:57,209,805
INFO 2026-06-02 22:11:49 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 0s. Last read position: chr12:57,535,762
INFO 2026-06-02 22:11:49 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 0s. Last read position: chr12:62,538,441
INFO 2026-06-02 22:11:50 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 0s. Last read position: chr12:68,650,428
INFO 2026-06-02 22:11:51 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 0s. Last read position: chr12:76,030,858
INFO 2026-06-02 22:11:52 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 0s. Last read position: chr12:89,349,298
INFO 2026-06-02 22:11:53 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 0s. Last read position: chr12:91,178,420
INFO 2026-06-02 22:11:54 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 0s. Last read position: chr12:98,634,341
INFO 2026-06-02 22:11:54 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 0s. Last read position: chr12:103,947,313
INFO 2026-06-02 22:11:55 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 0s. Last read position: chr12:108,623,741
INFO 2026-06-02 22:11:56 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 0s. Last read position: chr12:111,418,384
INFO 2026-06-02 22:11:57 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 0s. Last read position: chr12:112,917,615
INFO 2026-06-02 22:11:57 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 0s. Last read position: chr12:117,189,269
INFO 2026-06-02 22:11:58 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 0s. Last read position: chr12:120,575,842
INFO 2026-06-02 22:11:59 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 0s. Last read position: chr12:122,867,168
INFO 2026-06-02 22:12:00 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 0s. Last read position: chr12:124,340,008
INFO 2026-06-02 22:12:01 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 0s. Last read position: chr12:124,947,804
INFO 2026-06-02 22:12:01 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 0s. Last read position: chr12:132,730,088
INFO 2026-06-02 22:12:02 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 0s. Last read position: chr13:20,058,596
INFO 2026-06-02 22:12:03 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 0s. Last read position: chr13:26,214,826
INFO 2026-06-02 22:12:04 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 0s. Last read position: chr13:32,648,765
INFO 2026-06-02 22:12:05 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 0s. Last read position: chr13:37,570,578
INFO 2026-06-02 22:12:05 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 0s. Last read position: chr13:37,586,843
INFO 2026-06-02 22:12:06 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 0s. Last read position: chr13:42,991,987
INFO 2026-06-02 22:12:07 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 0s. Last read position: chr13:48,253,828
INFO 2026-06-02 22:12:08 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 0s. Last read position: chr13:67,227,033
INFO 2026-06-02 22:12:09 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 0s. Last read position: chr13:80,336,894
INFO 2026-06-02 22:12:09 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 0s. Last read position: chr13:99,529,554
INFO 2026-06-02 22:12:10 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 0s. Last read position: chr13:110,167,158
INFO 2026-06-02 22:12:11 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 0s. Last read position: chr13:110,213,797
INFO 2026-06-02 22:12:12 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 0s. Last read position: chr13:110,489,766
INFO 2026-06-02 22:12:13 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 0s. Last read position: chr13:113,495,554
INFO 2026-06-02 22:12:14 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 0s. Last read position: chr14:21,213,057
INFO 2026-06-02 22:12:14 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 0s. Last read position: chr14:23,059,204
INFO 2026-06-02 22:12:15 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 0s. Last read position: chr14:24,436,830
INFO 2026-06-02 22:12:16 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 0s. Last read position: chr14:41,891,489
INFO 2026-06-02 22:12:17 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 0s. Last read position: chr14:52,707,237
INFO 2026-06-02 22:12:18 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 0s. Last read position: chr14:61,740,903
INFO 2026-06-02 22:12:18 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 0s. Last read position: chr14:69,768,169
INFO 2026-06-02 22:12:19 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 0s. Last read position: chr14:74,809,399
INFO 2026-06-02 22:12:20 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 0s. Last read position: chr14:77,279,508
INFO 2026-06-02 22:12:21 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 0s. Last read position: chr14:94,100,800
INFO 2026-06-02 22:12:21 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 0s. Last read position: chr14:102,033,266
INFO 2026-06-02 22:12:22 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 0s. Last read position: chr14:104,773,535
INFO 2026-06-02 22:12:23 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 0s. Last read position: chr15:28,233,493
INFO 2026-06-02 22:12:24 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 0s. Last read position: chr15:34,529,178
INFO 2026-06-02 22:12:24 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 0s. Last read position: chr15:41,696,744
INFO 2026-06-02 22:12:25 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 0s. Last read position: chr15:43,521,322
INFO 2026-06-02 22:12:26 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 0s. Last read position: chr15:43,793,743
INFO 2026-06-02 22:12:27 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 0s. Last read position: chr15:48,537,797
INFO 2026-06-02 22:12:27 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 0s. Last read position: chr15:55,360,237
INFO 2026-06-02 22:12:28 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 0s. Last read position: chr15:59,107,374
INFO 2026-06-02 22:12:29 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 0s. Last read position: chr15:64,130,237
INFO 2026-06-02 22:12:30 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 0s. Last read position: chr15:66,436,768
INFO 2026-06-02 22:12:31 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 0s. Last read position: chr15:70,832,421
INFO 2026-06-02 22:12:31 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 0s. Last read position: chr15:73,702,776
INFO 2026-06-02 22:12:32 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 0s. Last read position: chr15:74,175,351
INFO 2026-06-02 22:12:33 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 0s. Last read position: chr15:75,675,906
INFO 2026-06-02 22:12:34 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 0s. Last read position: chr15:78,886,158
INFO 2026-06-02 22:12:34 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 0s. Last read position: chr15:84,797,888
INFO 2026-06-02 22:12:35 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 0s. Last read position: chr15:88,913,304
INFO 2026-06-02 22:12:36 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 0s. Last read position: chr15:92,924,388
INFO 2026-06-02 22:12:37 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 0s. Last read position: chr15:101,973,712
INFO 2026-06-02 22:12:37 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 0s. Last read position: chr16:796,961
INFO 2026-06-02 22:12:38 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 0s. Last read position: chr16:2,091,492
INFO 2026-06-02 22:12:39 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 0s. Last read position: chr16:2,761,677
INFO 2026-06-02 22:12:40 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 0s. Last read position: chr16:2,771,985
INFO 2026-06-02 22:12:40 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 0s. Last read position: chr16:4,455,558
INFO 2026-06-02 22:12:41 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 0s. Last read position: chr16:14,140,660
INFO 2026-06-02 22:12:42 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 0s. Last read position: chr16:15,036,122
INFO 2026-06-02 22:12:43 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 0s. Last read position: chr16:16,340,320
INFO 2026-06-02 22:12:43 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 0s. Last read position: chr16:18,364,311
INFO 2026-06-02 22:12:44 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 0s. Last read position: chr16:19,172,303
INFO 2026-06-02 22:12:45 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 0s. Last read position: chr16:21,835,497
INFO 2026-06-02 22:12:46 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 0s. Last read position: chr16:22,534,700
INFO 2026-06-02 22:12:47 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 0s. Last read position: chr16:28,111,982
INFO 2026-06-02 22:12:47 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 0s. Last read position: chr16:28,985,493
INFO 2026-06-02 22:12:48 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 0s. Last read position: chr16:29,810,324
INFO 2026-06-02 22:12:49 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 0s. Last read position: chr16:30,123,040
INFO 2026-06-02 22:12:50 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 0s. Last read position: chr16:30,729,099
INFO 2026-06-02 22:12:51 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 0s. Last read position: chr16:31,189,736
INFO 2026-06-02 22:12:52 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 0s. Last read position: chr16:48,561,936
INFO 2026-06-02 22:12:52 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 0s. Last read position: chr16:56,626,883
INFO 2026-06-02 22:12:53 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 0s. Last read position: chr16:66,608,396
INFO 2026-06-02 22:12:54 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 0s. Last read position: chr16:67,880,808
INFO 2026-06-02 22:12:55 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 0s. Last read position: chr16:70,264,802
INFO 2026-06-02 22:12:55 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 0s. Last read position: chr16:72,959,540
INFO 2026-06-02 22:12:56 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 0s. Last read position: chr16:81,043,158
INFO 2026-06-02 22:12:57 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 0s. Last read position: chr16:88,429,236
INFO 2026-06-02 22:12:58 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 0s. Last read position: chr16:89,560,986
INFO 2026-06-02 22:12:59 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 0s. Last read position: chr17:1,361,243
INFO 2026-06-02 22:12:59 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 0s. Last read position: chr17:1,728,108
INFO 2026-06-02 22:13:00 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 0s. Last read position: chr17:4,177,151
INFO 2026-06-02 22:13:01 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 0s. Last read position: chr17:6,622,926
INFO 2026-06-02 22:13:02 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 0s. Last read position: chr17:7,408,492
INFO 2026-06-02 22:13:02 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 0s. Last read position: chr17:7,577,895
INFO 2026-06-02 22:13:03 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 0s. Last read position: chr17:7,931,764
INFO 2026-06-02 22:13:04 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 0s. Last read position: chr17:13,601,033
INFO 2026-06-02 22:13:05 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 0s. Last read position: chr17:17,158,925
INFO 2026-06-02 22:13:06 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 0s. Last read position: chr17:19,380,686
INFO 2026-06-02 22:13:06 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 0s. Last read position: chr17:28,678,559
INFO 2026-06-02 22:13:07 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 0s. Last read position: chr17:31,095,334
INFO 2026-06-02 22:13:08 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 0s. Last read position: chr17:35,021,397
INFO 2026-06-02 22:13:09 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 0s. Last read position: chr17:37,577,509
INFO 2026-06-02 22:13:10 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 0s. Last read position: chr17:39,105,854
INFO 2026-06-02 22:13:10 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 0s. Last read position: chr17:40,273,970
INFO 2026-06-02 22:13:11 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 0s. Last read position: chr17:41,896,614
INFO 2026-06-02 22:13:12 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 0s. Last read position: chr17:42,676,418
INFO 2026-06-02 22:13:13 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 0s. Last read position: chr17:44,082,785
INFO 2026-06-02 22:13:13 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 0s. Last read position: chr17:45,475,676
INFO 2026-06-02 22:13:14 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 0s. Last read position: chr17:47,696,184
INFO 2026-06-02 22:13:15 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 0s. Last read position: chr17:50,150,354
INFO 2026-06-02 22:13:16 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 0s. Last read position: chr17:50,185,888
INFO 2026-06-02 22:13:16 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 0s. Last read position: chr17:50,186,676
INFO 2026-06-02 22:13:17 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 0s. Last read position: chr17:50,187,014
INFO 2026-06-02 22:13:18 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 0s. Last read position: chr17:50,187,905
INFO 2026-06-02 22:13:19 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 0s. Last read position: chr17:50,188,565
INFO 2026-06-02 22:13:19 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 0s. Last read position: chr17:50,188,963
INFO 2026-06-02 22:13:20 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 0s. Last read position: chr17:50,189,438
INFO 2026-06-02 22:13:21 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 0s. Last read position: chr17:50,189,861
INFO 2026-06-02 22:13:22 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 0s. Last read position: chr17:50,190,335
INFO 2026-06-02 22:13:23 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 0s. Last read position: chr17:50,191,442
INFO 2026-06-02 22:13:23 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 0s. Last read position: chr17:50,192,664
INFO 2026-06-02 22:13:24 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 0s. Last read position: chr17:50,193,947
INFO 2026-06-02 22:13:25 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 0s. Last read position: chr17:50,194,156
INFO 2026-06-02 22:13:26 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 0s. Last read position: chr17:50,194,728
INFO 2026-06-02 22:13:27 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 0s. Last read position: chr17:50,195,430
INFO 2026-06-02 22:13:28 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 0s. Last read position: chr17:50,195,964
INFO 2026-06-02 22:13:28 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 0s. Last read position: chr17:50,196,335
INFO 2026-06-02 22:13:29 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 0s. Last read position: chr17:50,197,030
INFO 2026-06-02 22:13:30 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 0s. Last read position: chr17:50,198,176
INFO 2026-06-02 22:13:31 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 0s. Last read position: chr17:50,199,281
INFO 2026-06-02 22:13:32 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 0s. Last read position: chr17:50,199,823
INFO 2026-06-02 22:13:32 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 0s. Last read position: chr17:50,985,769
INFO 2026-06-02 22:13:33 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 0s. Last read position: chr17:59,660,388
INFO 2026-06-02 22:13:34 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 0s. Last read position: chr17:59,838,345
INFO 2026-06-02 22:13:35 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 0s. Last read position: chr17:62,677,476
INFO 2026-06-02 22:13:36 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 0s. Last read position: chr17:64,500,023
INFO 2026-06-02 22:13:36 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 0s. Last read position: chr17:67,966,600
INFO 2026-06-02 22:13:37 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 0s. Last read position: chr17:68,530,320
INFO 2026-06-02 22:13:38 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 0s. Last read position: chr17:75,501,520
INFO 2026-06-02 22:13:39 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 0s. Last read position: chr17:76,736,181
INFO 2026-06-02 22:13:39 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 0s. Last read position: chr17:78,972,583
INFO 2026-06-02 22:13:40 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 0s. Last read position: chr17:80,383,809
INFO 2026-06-02 22:13:41 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 0s. Last read position: chr17:81,824,325
INFO 2026-06-02 22:13:42 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 0s. Last read position: chr17:82,080,508
INFO 2026-06-02 22:13:42 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 0s. Last read position: chr18:2,674,128
INFO 2026-06-02 22:13:43 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 0s. Last read position: chr18:10,979,547
INFO 2026-06-02 22:13:44 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 0s. Last read position: chr18:26,035,079
INFO 2026-06-02 22:13:45 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 0s. Last read position: chr18:46,089,591
INFO 2026-06-02 22:13:45 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 0s. Last read position: chr18:55,275,619
INFO 2026-06-02 22:13:46 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 0s. Last read position: chr18:62,978,999
INFO 2026-06-02 22:13:47 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 0s. Last read position: chr19:579,570
INFO 2026-06-02 22:13:48 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 0s. Last read position: chr19:1,230,022
INFO 2026-06-02 22:13:48 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 0s. Last read position: chr19:1,979,494
INFO 2026-06-02 22:13:49 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 0s. Last read position: chr19:3,366,632
INFO 2026-06-02 22:13:50 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 0s. Last read position: chr19:4,475,499
INFO 2026-06-02 22:13:51 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 0s. Last read position: chr19:5,790,089
INFO 2026-06-02 22:13:51 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 0s. Last read position: chr19:8,321,541
INFO 2026-06-02 22:13:52 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 0s. Last read position: chr19:10,162,667
INFO 2026-06-02 22:13:53 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 0s. Last read position: chr19:10,986,571
INFO 2026-06-02 22:13:54 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 0s. Last read position: chr19:11,364,382
INFO 2026-06-02 22:13:54 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 0s. Last read position: chr19:12,792,312
INFO 2026-06-02 22:13:55 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 0s. Last read position: chr19:13,912,324
INFO 2026-06-02 22:13:56 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 0s. Last read position: chr19:14,516,575
INFO 2026-06-02 22:13:57 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 0s. Last read position: chr19:15,181,698
INFO 2026-06-02 22:13:57 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 0s. Last read position: chr19:15,265,451
INFO 2026-06-02 22:13:58 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 0s. Last read position: chr19:17,162,445
INFO 2026-06-02 22:13:59 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 0s. Last read position: chr19:17,862,986
INFO 2026-06-02 22:14:00 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 0s. Last read position: chr19:18,435,891
INFO 2026-06-02 22:14:01 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 0s. Last read position: chr19:19,647,496
INFO 2026-06-02 22:14:01 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 0s. Last read position: chr19:34,500,159
INFO 2026-06-02 22:14:02 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 0s. Last read position: chr19:36,547,104
INFO 2026-06-02 22:14:03 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 0s. Last read position: chr19:39,383,701
INFO 2026-06-02 22:14:04 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 0s. Last read position: chr19:39,824,998
INFO 2026-06-02 22:14:04 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 0s. Last read position: chr19:41,230,982
INFO 2026-06-02 22:14:05 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 0s. Last read position: chr19:42,250,528
INFO 2026-06-02 22:14:06 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 0s. Last read position: chr19:42,362,125
INFO 2026-06-02 22:14:07 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 0s. Last read position: chr19:45,409,687
INFO 2026-06-02 22:14:08 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 0s. Last read position: chr19:45,816,504
INFO 2026-06-02 22:14:08 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 0s. Last read position: chr19:47,319,973
INFO 2026-06-02 22:14:09 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 0s. Last read position: chr19:48,874,097
INFO 2026-06-02 22:14:10 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 0s. Last read position: chr19:49,499,522
INFO 2026-06-02 22:14:11 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 0s. Last read position: chr19:49,857,921
INFO 2026-06-02 22:14:11 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 0s. Last read position: chr19:52,374,345
INFO 2026-06-02 22:14:12 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 0s. Last read position: chr19:54,452,715
INFO 2026-06-02 22:14:13 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 0s. Last read position: chr19:55,482,923
INFO 2026-06-02 22:14:14 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 0s. Last read position: chr19:57,826,714
INFO 2026-06-02 22:14:14 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 0s. Last read position: chr20:1,370,017
INFO 2026-06-02 22:14:15 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 0s. Last read position: chr20:3,784,987
INFO 2026-06-02 22:14:16 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 0s. Last read position: chr20:17,658,604
INFO 2026-06-02 22:14:17 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 0s. Last read position: chr20:23,633,926
INFO 2026-06-02 22:14:17 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 0s. Last read position: chr20:33,686,074
INFO 2026-06-02 22:14:18 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 0s. Last read position: chr20:35,699,430
INFO 2026-06-02 22:14:19 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 0s. Last read position: chr20:38,983,767
INFO 2026-06-02 22:14:20 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 0s. Last read position: chr20:45,425,676
INFO 2026-06-02 22:14:20 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 0s. Last read position: chr20:46,012,462
INFO 2026-06-02 22:14:21 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 0s. Last read position: chr20:47,627,163
INFO 2026-06-02 22:14:22 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 0s. Last read position: chr20:50,942,083
INFO 2026-06-02 22:14:23 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 0s. Last read position: chr20:58,840,808
INFO 2026-06-02 22:14:23 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 0s. Last read position: chr20:58,910,350
INFO 2026-06-02 22:14:24 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 0s. Last read position: chr20:62,139,828
INFO 2026-06-02 22:14:25 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 0s. Last read position: chr20:63,603,048
INFO 2026-06-02 22:14:26 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 0s. Last read position: chr21:8,214,656
INFO 2026-06-02 22:14:26 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 0s. Last read position: chr21:8,400,184
INFO 2026-06-02 22:14:27 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 0s. Last read position: chr21:25,911,931
INFO 2026-06-02 22:14:28 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 0s. Last read position: chr21:33,552,669
INFO 2026-06-02 22:14:29 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 0s. Last read position: chr21:39,293,848
INFO 2026-06-02 22:14:30 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 0s. Last read position: chr21:44,888,864
INFO 2026-06-02 22:14:30 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 0s. Last read position: chr21:45,987,638
INFO 2026-06-02 22:14:31 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 0s. Last read position: chr21:45,992,204
INFO 2026-06-02 22:14:32 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 0s. Last read position: chr21:46,002,235
INFO 2026-06-02 22:14:33 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 0s. Last read position: chr21:46,112,073
INFO 2026-06-02 22:14:33 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 0s. Last read position: chr21:46,118,616
INFO 2026-06-02 22:14:34 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 0s. Last read position: chr21:46,126,085
INFO 2026-06-02 22:14:35 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 0s. Last read position: chr22:17,683,274
INFO 2026-06-02 22:14:36 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 0s. Last read position: chr22:22,549,987
INFO 2026-06-02 22:14:36 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 0s. Last read position: chr22:29,278,054
INFO 2026-06-02 22:14:37 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 0s. Last read position: chr22:30,934,925
INFO 2026-06-02 22:14:38 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 0s. Last read position: chr22:36,298,923
INFO 2026-06-02 22:14:39 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 0s. Last read position: chr22:38,074,948
INFO 2026-06-02 22:14:40 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 0s. Last read position: chr22:41,127,682
INFO 2026-06-02 22:14:40 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 0s. Last read position: chr22:45,212,242
INFO 2026-06-02 22:14:41 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 0s. Last read position: chr22:50,525,756
INFO 2026-06-02 22:14:42 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 0s. Last read position: chrX:3,311,226
INFO 2026-06-02 22:14:43 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 0s. Last read position: chrX:11,760,481
INFO 2026-06-02 22:14:43 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 0s. Last read position: chrX:23,667,603
INFO 2026-06-02 22:14:44 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 0s. Last read position: chrX:40,597,310
INFO 2026-06-02 22:14:45 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 0s. Last read position: chrX:47,142,395
INFO 2026-06-02 22:14:46 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 0s. Last read position: chrX:47,586,521
INFO 2026-06-02 22:14:46 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 0s. Last read position: chrX:49,122,705
INFO 2026-06-02 22:14:47 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 0s. Last read position: chrX:53,194,330
INFO 2026-06-02 22:14:48 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 0s. Last read position: chrX:53,624,613
INFO 2026-06-02 22:14:49 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 0s. Last read position: chrX:65,729,646
INFO 2026-06-02 22:14:50 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 0s. Last read position: chrX:71,299,795
INFO 2026-06-02 22:14:50 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 0s. Last read position: chrX:77,574,292
INFO 2026-06-02 22:14:51 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 0s. Last read position: chrX:79,361,406
INFO 2026-06-02 22:14:52 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 0s. Last read position: chrX:101,616,304
INFO 2026-06-02 22:14:52 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 0s. Last read position: chrX:110,264,574
INFO 2026-06-02 22:14:53 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 0s. Last read position: chrX:120,253,423
INFO 2026-06-02 22:14:54 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 0s. Last read position: chrX:130,015,762
INFO 2026-06-02 22:14:55 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 0s. Last read position: chrX:149,525,802
INFO 2026-06-02 22:14:56 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 0s. Last read position: chrX:153,954,670
INFO 2026-06-02 22:14:56 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 0s. Last read position: chrX:154,370,873
INFO 2026-06-02 22:14:57 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 0s. Last read position: chrM:9,274
INFO 2026-06-02 22:14:58 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 0s. Last read position: KI270711.1:12,953
INFO 2026-06-02 22:14:59 RExecutor Executing R script via command: Rscript /tmp/script10426447707373251024.R /tmp/nxf.XXXXlgNZV8/659_bua-T1-TRNA-1_B23MHV2LT4_1_collectinsertsize.txt /tmp/nxf.XXXXlgNZV8/659_bua-T1-TRNA-1_B23MHV2LT4_1_collectinsertsize.pdf 659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
ERROR 2026-06-02 22:14:59 ProcessExecutor /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 22:14:59 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 22:14:59 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR 2026-06-02 22:14:59 ProcessExecutor During startup - Warning messages:
ERROR 2026-06-02 22:14:59 ProcessExecutor 1: Setting LC_CTYPE failed, using "C"
ERROR 2026-06-02 22:14:59 ProcessExecutor 2: Setting LC_COLLATE failed, using "C"
ERROR 2026-06-02 22:14:59 ProcessExecutor 3: Setting LC_TIME failed, using "C"
ERROR 2026-06-02 22:14:59 ProcessExecutor 4: Setting LC_MESSAGES failed, using "C"
ERROR 2026-06-02 22:14:59 ProcessExecutor 5: Setting LC_MONETARY failed, using "C"
ERROR 2026-06-02 22:14:59 ProcessExecutor 6: Setting LC_PAPER failed, using "C"
ERROR 2026-06-02 22:14:59 ProcessExecutor 7: Setting LC_MEASUREMENT failed, using "C"
INFO 2026-06-02 22:14:59 ProcessExecutor null device
INFO 2026-06-02 22:14:59 ProcessExecutor 1
ERROR 2026-06-02 22:14:59 ProcessExecutor sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
[Tue Jun 02 22:14:59 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 8.11 minutes.
Runtime.totalMemory()=373293056