File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/25b9a2cf70e6ea9ee803b479c6da38/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 02 23:15:24
                             Started mapping on |	Jun 02 23:21:50
                                    Finished on |	Jun 02 23:58:35
       Mapping speed, Million of reads per hour |	347.20

                          Number of input reads |	212662554
                      Average input read length |	230
                                    UNIQUE READS:
                   Uniquely mapped reads number |	203267576
                        Uniquely mapped reads % |	95.58%
                          Average mapped length |	229.72
                       Number of splices: Total |	185704788
            Number of splices: Annotated (sjdb) |	182840246
                       Number of splices: GT/AG |	183324367
                       Number of splices: GC/AG |	1326372
                       Number of splices: AT/AC |	134136
               Number of splices: Non-canonical |	919913
                      Mismatch rate per base, % |	0.32%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.20
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.92
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6908988
             % of reads mapped to multiple loci |	3.25%
        Number of reads mapped to too many loci |	449645
             % of reads mapped to too many loci |	0.21%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1726763
                 % of reads unmapped: too short |	0.81%
                Number of reads unmapped: other |	309582
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%