Sample Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30 Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES RSeQC_mqc-generalstats-rseqc-proper_pairs_percent STAR_mqc-generalstats-star-uniquely_mapped_percent STAR_mqc-generalstats-star-uniquely_mapped fastp_mqc-generalstats-fastp-pct_duplication fastp_mqc-generalstats-fastp-after_filtering_q30_rate fastp_mqc-generalstats-fastp-after_filtering_q30_bases fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads fastp_mqc-generalstats-fastp-after_filtering_gc_content fastp_mqc-generalstats-fastp-pct_surviving fastp_mqc-generalstats-fastp-pct_adapter Kallisto_mqc-generalstats-kallisto-fragment_length Kallisto_mqc-generalstats-kallisto-percent_aligned Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences
rna_s1200_S21 19200129.0 0.9607 19875412.0 0.003853 0.183621 16225876.0 0.945347 0.972121 0.049933 0.027879 15339088.0 7832369.0 810206.0 224622.0 34.559207 5.0 0.293198 0.084685 0.985625 0.0 Skipped N/A 181.1 166.0 0.002 4.584 2.972 0.0 0.003 10.895 3.446 0.0 6.696 9999000000.0 53979070.0 294 762.227728 0.184331 0.0 96.3936 90.33600244662823 95.95 9534804.0 13.3191 0.984633 2750334612.0 19875412.0 0.535761 99.37706 32.738935000000005
rna_s1200_S21_1 181.1 97.82623877180508 9721684.0 55.1196738153078 53.0 150.0 150 27.27272727272727 10000000.0
rna_s1200_S21_2 51.30713513081027 53.0 150.0 150 18.181818181818183 10000000.0
rna_s1200_S21_trimmed_1 55.20979973333161 53.0 140.52089164239715 150 18.181818181818183 9937706.0 55.20979973333161 53.0 140.52089164239715 150 18.181818181818183 9937706.0
rna_s1200_S21_trimmed_2 51.43328044275465 53.0 140.53251514987463 150 9.090909090909092 9937706.0 51.43328044275465 53.0 140.53251514987463 150 9.090909090909092 9937706.0
rna_s1221_S42 18864613.0 0.9584 19864012.0 0.004391 0.198705 15916933.0 0.936077 0.962008 0.058443 0.037992 14899481.0 7595968.0 930229.0 299983.0 32.870035 5.0 0.28172 0.079333 0.98502 0.0 Skipped N/A 175.5 161.0 0.005 4.713 2.826 0.0 0.009 11.321 3.189 0.0 6.774 9999000000.0 53000545.0 255 661.011966 0.199581 0.0873 95.2555 80.25001383886074 94.32 9368114.0 13.947899999999999 0.983893 2705779238.0 19864012.0 0.533166 99.32006 36.832589999999996
rna_s1221_S42_1 175.5 96.36796433671103 9571272.0 57.988386175167875 52.0 150.0 150 27.27272727272727 10000000.0
rna_s1221_S42_2 52.2829601665107 53.0 150.0 150 18.181818181818183 10000000.0
rna_s1221_S42_trimmed_1 58.06626133669685 53.0 138.4228959386452 150 18.181818181818183 9932006.0 58.06626133669685 53.0 138.4228959386452 150 18.181818181818183 9932006.0
rna_s1221_S42_trimmed_2 52.384744289571934 53.0 138.44541374622608 150 9.090909090909092 9932006.0 52.384744289571934 53.0 138.44541374622608 150 9.090909090909092 9932006.0