.command.err - Workdir - NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1200_S21)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/3e604a7c8b9e212ed4e4676235f6c0/.command.err
Size: 479 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1200_S21)
Attempt

Content

Processing Kallisto file: rna_s1200_S21/abundance.h5
Successfully converted rna_s1200_S21/abundance.h5 to rna_s1200_S21_kallisto_mqc.tsv
  Sample: rna_s1200_S21
  Mean Fragment Length: 181.1 bp
  Median Fragment Length: 166.0 bp
  pct_mito_est_counts: 0.002%
  pct_ribo_est_counts: 4.584%
  pct_hk_est_counts: 2.972%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.003%
  pct_ribo_tpm: 10.895%
  pct_hk_tpm: 3.446%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.696%