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Filename
multiqc_general_stats.tsv
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s3://natera-rnd-pltf-dev-s3-gitlab-results/rnafusion/build2784826/baseline-run/63161918/QC/multiqc/multiqc_data/multiqc_general_stats.tsv
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Workflow Run
gitlab-rnafusion-build2784826-baseline-run-63161918
Published
Jun 02, 2026 9:31 PM

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sample_id AFTER_FILTERING_Q30_RATE CONTAMINATION_PCT FRAC_ANTISENSE FRAC_UNMAPPED FRAGMENT_LENGTH_MEAN FRAGMENT_LENGTH_MEDIAN IS_CONTAMINATED N_Q30 PERCENT_DUPLICATION PCT_MITO_EST_COUNTS MITOCHONDRIAL_CONTAMINATION PCT_MRNA_BASES PCT_RIBOSOMAL_BASES SCORE_LOG2TPM1_MEAN_CHRY_SIGNATURE UNIQUE_READS_RSEQC UNIQUELY_MAPPED_PERCENT GC_BIAS PCT_ADAPTER PCT_DUPLICATION PCT_HK_EST_COUNTS PCT_HK_TPM PCT_MALE_EST_COUNTS PCT_MALE_TPM PCT_RIBO_EST_COUNTS RIBOSOMAL_CONTAMINATION PCT_SURVIVING PERCENT_GC READS MAPPED_READS AVG_SEQUENCE_LENGTH PERCENT_DUPLICATES PERCENT_FAILS TOTAL_SEQUENCES FRAC_BASES_GT30X FRAC_READS_OFF_TARGET FRAC_READS_ON_TARGET MEAN_DEPTH Q50_DEPTH FRAC_BASES_GT100X FRAC_PAIRS_OFF_TARGET FRAC_PAIRS_ON_TARGET PAIRS_OFF_TARGET PAIRS_ON_TARGET READS_OFF_TARGET READS_ON_TARGET EXPECTED_DISTINCT FRAC_DUPES UNIQUE_READS TOTAL_READS AFTER_FILTERING_GC_CONTENT AFTER_FILTERING_Q30_BASES FILTERING_RESULT_PASSED_FILTER_READS FRAGMENT_LENGTH MEDIAN_SEQUENCE_LENGTH PERCENT_ALIGNED PROPER_PAIRS_PERCENT PSEUDOALIGNED_READS SUMMED_MEAN SUMMED_MEDIAN
rna_s1200_S21 0.984633 N/A 0.9607 0.003853 181.2 166.0 Skipped 0.985625 0.184331 0.002 0.003 96.3936 0.0 6.696 19200129.0 95.95 0.0 32.738935000000005 13.3191 2.972 3.446 0.0 0.0 4.584 10.895 99.37706 19875412.0 9534804.0 0.293198 0.049933 0.945347 34.559207 5.0 0.084685 0.027879 0.972121 224622.0 7832369.0 810206.0 15339088.0 53979070.0 0.183621 16225876.0 9999000000.0 0.535761 2750334612.0 19875412.0 90.33600244662823 762.227728 294
rna_s1200_S21_1 53.0 150.0 55.1196738153078 27.27272727272727 10000000.0 181.2 150 97.82623877180508 9721684.0
rna_s1200_S21_2 53.0 150.0 51.30713513081027 18.181818181818183 10000000.0 150
rna_s1200_S21_trimmed_1 53.0 140.52089164239715 55.20979973333161 18.181818181818183 9937706.0 150
rna_s1200_S21_trimmed_2 53.0 140.53251514987463 51.43328044275465 9.090909090909092 9937706.0 150
rna_s1221_S42 0.983893 N/A 0.9584 0.004391 175.5 161.0 Skipped 0.98502 0.199581 0.005 0.009 95.2555 0.0873 6.774 18864613.0 94.32 0.0 36.832589999999996 13.947899999999999 2.826 3.189 0.0 0.0 4.713 11.321 99.32006 19864012.0 9368114.0 0.28172 0.058443 0.936077 32.870035 5.0 0.079333 0.037992 0.962008 299983.0 7595968.0 930229.0 14899481.0 53000545.0 0.198705 15916933.0 9999000000.0 0.533166 2705779238.0 19864012.0 80.25001383886074 661.011966 255
rna_s1221_S42_1 52.0 150.0 57.988386175167875 27.27272727272727 10000000.0 175.5 150 96.36796433671103 9571272.0
rna_s1221_S42_2 53.0 150.0 52.2829601665107 18.181818181818183 10000000.0 150
rna_s1221_S42_trimmed_1 53.0 138.4228959386452 58.06626133669685 18.181818181818183 9932006.0 150
rna_s1221_S42_trimmed_2 53.0 138.44541374622608 52.384744289571934 9.090909090909092 9932006.0 150
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