Module Section Sample Name Source
Kallisto all_sections rna_s1200_S21_1 /tmp/nxf.aqAd1LVTgT/16/rna_s1200_S21.log
Kallisto all_sections rna_s1221_S42_1 /tmp/nxf.aqAd1LVTgT/15/rna_s1221_S42.log
Picard InsertSizeMetrics rna_s1200_S21 /tmp/nxf.aqAd1LVTgT/24/rna_s1200_S21_collectinsertsize.txt
Picard InsertSizeMetrics rna_s1221_S42 /tmp/nxf.aqAd1LVTgT/23/rna_s1221_S42_collectinsertsize.txt
Picard DuplicationMetrics rna_s1221_S42 /tmp/nxf.aqAd1LVTgT/50/rna_s1221_S42.md.bam.metrics
Picard DuplicationMetrics rna_s1200_S21 /tmp/nxf.aqAd1LVTgT/49/rna_s1200_S21.md.bam.metrics
Picard RnaSeqMetrics rna_s1200_S21 /tmp/nxf.aqAd1LVTgT/52/rna_s1200_S21_rna_metrics.txt
Picard RnaSeqMetrics rna_s1221_S42 /tmp/nxf.aqAd1LVTgT/51/rna_s1221_S42_rna_metrics.txt
Preseq all_sections rna_s1200_S21.lc_extrap /tmp/nxf.aqAd1LVTgT/32/rna_s1200_S21.lc_extrap.txt
Preseq all_sections rna_s1221_S42.lc_extrap /tmp/nxf.aqAd1LVTgT/31/rna_s1221_S42.lc_extrap.txt
RSeQC read_distribution rna_s1221_S42 /tmp/nxf.aqAd1LVTgT/39/rna_s1221_S42.read_distribution.txt
RSeQC read_distribution rna_s1200_S21 /tmp/nxf.aqAd1LVTgT/40/rna_s1200_S21.read_distribution.txt
RSeQC inner_distance rna_s1221_S42 /tmp/nxf.aqAd1LVTgT/37/rna_s1221_S42.inner_distance_freq.txt
RSeQC inner_distance rna_s1200_S21 /tmp/nxf.aqAd1LVTgT/38/rna_s1200_S21.inner_distance_freq.txt
RSeQC read_duplication rna_s1200_S21 /tmp/nxf.aqAd1LVTgT/42/rna_s1200_S21.pos.DupRate.xls
RSeQC read_duplication rna_s1221_S42 /tmp/nxf.aqAd1LVTgT/41/rna_s1221_S42.pos.DupRate.xls
RSeQC junction_annotation rna_s1200_S21 /tmp/nxf.aqAd1LVTgT/46/rna_s1200_S21.junction_annotation.log
RSeQC junction_annotation rna_s1221_S42 /tmp/nxf.aqAd1LVTgT/45/rna_s1221_S42.junction_annotation.log
RSeQC junction_saturation rna_s1200_S21 /tmp/nxf.aqAd1LVTgT/36/rna_s1200_S21.junctionSaturation_plot.r
RSeQC junction_saturation rna_s1221_S42 /tmp/nxf.aqAd1LVTgT/35/rna_s1221_S42.junctionSaturation_plot.r
RSeQC infer_experiment rna_s1200_S21 /tmp/nxf.aqAd1LVTgT/28/rna_s1200_S21.infer_experiment.txt
RSeQC infer_experiment rna_s1221_S42 /tmp/nxf.aqAd1LVTgT/27/rna_s1221_S42.infer_experiment.txt
RSeQC bam_stat rna_s1221_S42 /tmp/nxf.aqAd1LVTgT/33/rna_s1221_S42.bam_stat.txt
RSeQC bam_stat rna_s1200_S21 /tmp/nxf.aqAd1LVTgT/34/rna_s1200_S21.bam_stat.txt
STAR SummaryLog rna_s1221_S42 /tmp/nxf.aqAd1LVTgT/19/rna_s1221_S42.Log.final.out
STAR SummaryLog rna_s1200_S21 /tmp/nxf.aqAd1LVTgT/20/rna_s1200_S21.Log.final.out
STAR ReadsPerGene rna_s1200_S21 /tmp/nxf.aqAd1LVTgT/22/rna_s1200_S21.ReadsPerGene.out.tab
STAR ReadsPerGene rna_s1221_S42 /tmp/nxf.aqAd1LVTgT/21/rna_s1221_S42.ReadsPerGene.out.tab
fastp all_sections rna_s1200_S21 /tmp/nxf.aqAd1LVTgT/8/rna_s1200_S21.fastp.json
fastp all_sections rna_s1221_S42 /tmp/nxf.aqAd1LVTgT/7/rna_s1221_S42.fastp.json
FastQC (raw) all_sections rna_s1221_S42_trimmed_2 /tmp/nxf.aqAd1LVTgT/12/rna_s1221_S42_trimmed_2_fastqc.zip
FastQC (raw) all_sections rna_s1221_S42_2 /tmp/nxf.aqAd1LVTgT/4/rna_s1221_S42_2_fastqc.zip
FastQC (raw) all_sections rna_s1200_S21_1 /tmp/nxf.aqAd1LVTgT/5/rna_s1200_S21_1_fastqc.zip
FastQC (raw) all_sections rna_s1200_S21_trimmed_1 /tmp/nxf.aqAd1LVTgT/13/rna_s1200_S21_trimmed_1_fastqc.zip
FastQC (raw) all_sections rna_s1221_S42_1 /tmp/nxf.aqAd1LVTgT/3/rna_s1221_S42_1_fastqc.zip
FastQC (raw) all_sections rna_s1221_S42_trimmed_1 /tmp/nxf.aqAd1LVTgT/11/rna_s1221_S42_trimmed_1_fastqc.zip
FastQC (raw) all_sections rna_s1200_S21_2 /tmp/nxf.aqAd1LVTgT/6/rna_s1200_S21_2_fastqc.zip
FastQC (raw) all_sections rna_s1200_S21_trimmed_2 /tmp/nxf.aqAd1LVTgT/14/rna_s1200_S21_trimmed_2_fastqc.zip
FastQC (trimmed) all_sections rna_s1221_S42_trimmed_2 /tmp/nxf.aqAd1LVTgT/12/rna_s1221_S42_trimmed_2_fastqc.zip
FastQC (trimmed) all_sections rna_s1200_S21_trimmed_1 /tmp/nxf.aqAd1LVTgT/13/rna_s1200_S21_trimmed_1_fastqc.zip
FastQC (trimmed) all_sections rna_s1221_S42_trimmed_1 /tmp/nxf.aqAd1LVTgT/11/rna_s1221_S42_trimmed_1_fastqc.zip
FastQC (trimmed) all_sections rna_s1200_S21_trimmed_2 /tmp/nxf.aqAd1LVTgT/14/rna_s1200_S21_trimmed_2_fastqc.zip