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rna_s1221_S42.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
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s3://natera-rnd-pltf-dev-s3-gitlab-results/rnafusion/build2786062/regression-run/63191069/starfusion/rna_s1221_S42.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
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Published
Jun 03, 2026 3:01 PM
#FusionName JunctionReadCount SpanningFragCount est_J est_S SpliceType LeftGene LeftBreakpoint RightGene RightBreakpoint JunctionReads SpanningFrags LargeAnchorSupport FFPM LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy annots breakpoint_ID blacklisted blacklist_reasons aih_curated_reason CALL filter_reason FILTER total_reads
FGFR3--TACC3 29 0 29.0 0.0 ONLY_REF_SPLICE FGFR3^ENSG00000068078.20 chr4:1806934:+ TACC3^ENSG00000013810.20 chr4:1739702:+ &rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:110254350:110264350,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:144045710:144055710,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:153535120:153545120,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:160550110:160560110,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:164815460:164825460,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:165731810:165741810,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:170063320:170073320,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:178999920:179009920,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:112919410:112929410,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:118464700:118474700,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:124371890:124381890,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:139793760:139803760,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:142938110:142948110,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:145670420:145680420,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:150072740:150082740,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:163095770:163105770,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:188123480:188133480,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:199687200:199697200,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:127173320:127183320,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:151699350:151709350,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:163982960:163992960,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:171930860:171940860,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:194263860:194273860,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:197101420:197111420,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:120300050:120310050,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:129123590:129133590,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:142537460:142547460,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:169368800:169378800,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:189380640:189390640 . YES_LDAS 2.9199 GT 1.8892 AG 1.7819 ["ChimerKB","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","Klijn_CellLines","DEEPEST2019","GUO2018CR_TCGA","ChimerPub","TumorFusionsNAR2018","Cosmic","INTRACHROMOSOMAL[chr4:0.05Mb]","LOCAL_REARRANGEMENT:+:[48122]"] chr4:1806934-chr4:1739702 False 1 PASS 29
LMNA--NTRK1 22 0 22.0 0.0 ONLY_REF_SPLICE LMNA^ENSG00000160789.23 chr1:156130773:+ NTRK1^ENSG00000198400.13 chr1:156874906:+ &rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:106142050:106152050,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:135814020:135824020,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:154376590:154386590,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:162985760:162995760,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:178383360:178393360,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:183101920:183111920,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:185976960:185986960,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:188936360:188946360,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:114170330:114180330,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:140089430:140099430,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:141994820:142004820,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:157079590:157089590,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:162923440:162933440,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:174359880:174369880,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:177787000:177797000,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:119331150:119341150,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:139444180:139454180,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:152444590:152454590,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:180678360:180688360,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:142221230:142231230,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:168290960:168300960,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:182105480:182115480 . YES_LDAS 2.2151 GT 1.7465 AG 1.5058 ["ChimerKB","ChimerPub","Cosmic","TCGA_StarF2019","INTRACHROMOSOMAL[chr1:0.68Mb]"] chr1:156130773-chr1:156874906 False 1 PASS 22
PAX8--PPARG 19 0 19.0 0.0 ONLY_REF_SPLICE PAX8^ENSG00000125618.18 chr2:113235394:- PPARG^ENSG00000132170.23 chr3:12379704:+ &rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:110557600:110567600,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:123685670:123695670,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:129145280:129155280,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:135873490:135883490,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:142667990:142677990,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:145413880:145423880,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:160896630:160906630,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:175591860:175601860,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:114157790:114167790,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:186829560:186839560,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:105790680:105800680,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:107887330:107897330,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:125391490:125401490,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:170907060:170917060,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:171041080:171051080,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:102689670:102699670,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:107114360:107124360,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:129188250:129198250,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:154504510:154514510 . YES_LDAS 1.913 GT 1.8295 AG 1.9329 ["Mitelman","ChimerKB","ChimerSeq","TCGA_StarF2019","YOSHIHARA_TCGA","HaasMedCancer","chimerdb_pubmed","chimerdb_omim","DEEPEST2019","GUO2018CR_TCGA","ChimerPub","TumorFusionsNAR2018","Cosmic","INTERCHROMOSOMAL[chr2--chr3]"] chr2:113235394-chr3:12379704 False 1 PASS 19
ETV6--NTRK3 19 0 19.0 0.0 ONLY_REF_SPLICE ETV6^ENSG00000139083.11 chr12:11869969:+ NTRK3^ENSG00000140538.16 chr15:87940753:- &rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:108436840:108446840,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:117665360:117675360,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:143897140:143907140,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:109656140:109666140,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:114379060:114389060,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:187135080:187145080,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:194468760:194478760,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:112717140:112727140,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:115047590:115057590,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:142495850:142505850,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:163563280:163573280,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:167892680:167902680,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:176592440:176602440,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:193542040:193552040,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:107746990:107756990,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:125293000:125303000,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:142989740:142999740,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:180328560:180338560,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:199816980:199826980 . YES_LDAS 1.913 GT 1.7819 AG 1.9656 ["ChimerKB","Larsson_TCGA","ChimerSeq","TCGA_StarF2019","YOSHIHARA_TCGA","HaasMedCancer","chimerdb_pubmed","chimerdb_omim","DEEPEST2019","GUO2018CR_TCGA","ChimerPub","TumorFusionsNAR2018","Cosmic","INTERCHROMOSOMAL[chr12--chr15]"] chr12:11869969-chr15:87940753 False 1 PASS 19
EGFR--SEPTIN14 19 0 19.0 0.0 ONLY_REF_SPLICE EGFR^ENSG00000146648.19 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 chr7:55796092:- &rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:123837080:123847080,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:154211320:154221320,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:175887920:175897920,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:184009660:184019660,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:184188320:184198320,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:190825340:190835340,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:104544800:104554800,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:192037840:192047840,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:101331620:101341620,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:104460550:104470550,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:117301920:117311920,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:125998540:126008540,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:175966020:175976020,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:191697200:191707200,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:105963210:105973210,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:117795060:117805060,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:142980110:142990110,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:175531440:175541440,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:175621460:175631460 . YES_LDAS 1.913 GT 1.8892 AG 1.9899 ["INTRACHROMOSOMAL[chr7:0.58Mb]"] chr7:55200413-chr7:55796092 False 1 PASS 19
FGFR3--BAIAP2L1 17 0 17.0 0.0 ONLY_REF_SPLICE FGFR3^ENSG00000068078.20 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 chr7:98362432:- &rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:102533240:102543240,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:133736800:133746800,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:159620770:159630770,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:162189670:162199670,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:165144720:165154720,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:165773160:165783160,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:157573110:157583110,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:104672530:104682530,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:125428790:125438790,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:154139900:154149900,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:156600120:156610120,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:166255480:166265480,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:177723880:177733880,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:121204890:121214890,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:167667880:167677880,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:176895300:176905300,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:181456980:181466980 . YES_LDAS 1.7116 GT 1.8892 AG 1.8062 ["ChimerKB","Klijn_CellLines","ChimerPub","Cosmic","CCLE_StarF2019","INTERCHROMOSOMAL[chr4--chr7]"] chr4:1806934-chr7:98362432 False 1 PASS 17
KIF5B--RET 15 0 15.0 0.0 ONLY_REF_SPLICE KIF5B^ENSG00000170759.11 chr10:32017143:- RET^ENSG00000165731.20 chr10:43114480:+ &rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:103070150:103080150,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:107479970:107489970,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:176792320:176802320,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:185165200:185175200,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:101734440:101744440,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:103771410:103781410,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:125250910:125260910,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:150086940:150096940,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:170177900:170187900,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:177425480:177435480,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:119669980:119679980,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:131014380:131024380,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:185301520:185311520,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:135013380:135023380,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:160998930:161008930 . YES_LDAS 1.5103 GT 1.9656 AG 1.9656 ["ChimerKB","ChimerPub","Cosmic","ChimerSeq","INTRACHROMOSOMAL[chr10:11.02Mb]"] chr10:32017143-chr10:43114480 False 1 PASS 15
CD74--ROS1 12 1 12.0 1.0 ONLY_REF_SPLICE CD74^ENSG00000019582.16 chr5:150404680:- ROS1^ENSG00000047936.11 chr6:117324415:- &rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:123501700:123511700,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:165849850:165859850,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:141458070:141468070,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:155946520:155956520,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:163839600:163849600,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:163939440:163949440,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:177099000:177109000,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:168414720:168424720,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:147556630:147566630,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:165006360:165016360,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:167689610:167699610,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:185288800:185298800 &rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:159296320:159306320 YES_LDAS 1.3089 GT 1.7819 AG 1.7465 ["ChimerKB","ChimerSeq","TCGA_StarF2019","Klijn_CellLines","chimerdb_pubmed","DEEPEST2019","GUO2018CR_TCGA","ChimerPub","TumorFusionsNAR2018","Cosmic","INTERCHROMOSOMAL[chr5--chr6]"] chr5:150404680-chr6:117324415 False 1 PASS 13
NCOA4--RET 11 0 11.0 0.0 ONLY_REF_SPLICE NCOA4^ENSG00000266412.6 chr10:46012883:- RET^ENSG00000165731.20 chr10:43116584:+ &rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:123748870:123758870,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:146132110:146142110,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:113709440:113719440,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:132675980:132685980,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:139941720:139951720,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:184004760:184014760,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:115141820:115151820,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:129575110:129585110,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:3:1101:167336160:167346160,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:142941020:142951020,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:152609140:152619140 . YES_LDAS 1.1075 GT 1.9086 AG 1.8323 ["ChimerKB","ChimerSeq","TCGA_StarF2019","YOSHIHARA_TCGA","HaasMedCancer","chimerdb_pubmed","DEEPEST2019","GUO2018CR_TCGA","ChimerPub","TumorFusionsNAR2018","Cosmic","INTRACHROMOSOMAL[chr10:2.87Mb]"] chr10:46012883-chr10:43116584 False 1 PASS 11
SLC45A3--BRAF 8 0 8.0 0.0 ONLY_REF_SPLICE SLC45A3^ENSG00000158715.6 chr1:205680394:- BRAF^ENSG00000157764.14 chr7:140794467:- &rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:102019990:102029990,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:114480240:114490240,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:151846950:151856950,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:1:1101:180341680:180351680,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:113217710:113227710,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:177309360:177319360,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:2:1101:183363880:183373880,&rna_s1221_S42@SYNTHESIZER:1:REGRESSION:4:1101:194269680:194279680 . YES_LDAS 0.8055 GT 1.5628 AG 1.7465 ["ChimerKB","ChimerPub","Cosmic","ChimerSeq","INTERCHROMOSOMAL[chr1--chr7]"] chr1:205680394-chr7:140794467 False 1 PASS 8
11 rows