output/Logs/Info.log - Workdir - NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT (REGRESSION;L004)

File Info

Filename: output/Logs/Info.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/9745b189f658e0e6a576ab62294f7d/output/Logs/Info.log
Size: 2.8 KB
Task: NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT (REGRESSION;L004)
Attempt

Content

2026-06-03T21:45:43Z thread 307 Sample sheet being processed by common lib? Yes
2026-06-03T21:45:43Z thread 307 SampleSheet Settings: 
2026-06-03T21:45:43Z thread 307   OverrideCycles = Y150;I8;I8;Y150
2026-06-03T21:45:43Z thread 307 
2026-06-03T21:45:43Z thread 307 shared-thread-linux-native-asio output is disabled
2026-06-03T21:45:43Z thread 307 bcl-convert Version 4.4.6
2026-06-03T21:45:43Z thread 307 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-03T21:45:43Z thread 307 Command Line: --tiles s_4 --output-directory output --bcl-input-directory rundir --sample-sheet SampleSheet.csv 
2026-06-03T21:45:43Z thread 307 Conversion Begins.
2026-06-03T21:45:43Z thread 307 Input BCL Information:
2026-06-03T21:45:43Z thread 307     Read Structure: 2026-06-03T21:45:43Z thread 307 Y1502026-06-03T21:45:43Z thread 307 ;2026-06-03T21:45:43Z thread 307 I82026-06-03T21:45:43Z thread 307 ;2026-06-03T21:45:43Z thread 307 I82026-06-03T21:45:43Z thread 307 ;2026-06-03T21:45:43Z thread 307 Y1502026-06-03T21:45:43Z thread 307 
2026-06-03T21:45:43Z thread 307     RunInfo.xml file lists: 4 lanes, 4 tiles
2026-06-03T21:45:43Z thread 307     BCL file format: bcl.gz
2026-06-03T21:45:43Z thread 307     Positions file format: locs
2026-06-03T21:45:43Z thread 307     Filter file format: filter
2026-06-03T21:45:43Z thread 307 Conversion Information:
2026-06-03T21:45:43Z thread 307     Tile filtering: converting 1/4 tiles
2026-06-03T21:45:43Z thread 307     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:45:43Z thread 307     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:45:43Z thread 307     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:45:43Z thread 307     Sample Count: 2
2026-06-03T21:45:43Z thread 307     Expected number of sample FASTQ files to be created: 4
2026-06-03T21:45:43Z thread 307 # CPU hw threads available: 64
2026-06-03T21:45:43Z thread 307 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-03T21:45:43Z thread 307 SW compressors: 64
2026-06-03T21:45:43Z thread 307 SW decompressors: 32
2026-06-03T21:45:43Z thread 307 SW FASTQ compression level: 1
2026-06-03T21:45:46Z thread 307 Lane 4 Post-run Information:
2026-06-03T21:45:46Z thread 307     Total clusters: 5000000
2026-06-03T21:45:46Z thread 307     Total Genomic Reads: 10000000
2026-06-03T21:45:46Z thread 307     Total Genomic Input Gigabases 1.50
2026-06-03T21:45:46Z thread 307     Minimum reads for a sample: 4999702
2026-06-03T21:45:46Z thread 307     Maximum reads for a sample: 5000298
2026-06-03T21:45:46Z thread 307     Average reads per sample: 5000000.00
2026-06-03T21:45:46Z thread 307     Undetermined reads: 0
2026-06-03T21:45:46Z thread 307 Conversion Complete.