File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/10a656e8609596777533f6aca074c5/.command.log
Size
975 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1221_S42)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/10a656e8609596777533f6aca074c5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/10a656e8609596777533f6aca074c5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/f0f737a0d8b1567e2a3e49737f4f73/rna_s1221_S42.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/629e8bf49a963f720e3ad7cab5f821/rna_s1221_S42
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: rna_s1221_S42/abundance.h5
Successfully converted rna_s1221_S42/abundance.h5 to rna_s1221_S42_kallisto_mqc.tsv
  Sample: rna_s1221_S42
  Mean Fragment Length: 175.4 bp
  Median Fragment Length: 161.0 bp
  pct_mito_est_counts: 0.005%
  pct_ribo_est_counts: 4.713%
  pct_hk_est_counts: 2.826%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.009%
  pct_ribo_tpm: 11.321%
  pct_hk_tpm: 3.189%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.774%