Sample	agat	arriba	filter_arriba_main.py	pandas	pyyaml	python	contamination_skipped_low_reads	ctat-splicing	fastp	fastqc	STAR-Fusion	fusion_report	fusion_report DB retrieval	gatk4	samtools	perl	kallisto	expression_qc_and_signatures	picard	preseq	preseq_to_multiqc	rseqc	rseqc_to_multiqc	seqtool_to_multiqc	filter_starfusion_main.py	numpy	boto3	star	gawk	HGNC DB retrieval	nf-core/rnafusion	Nextflow
AGAT_CONVERTSPGFF2TSV	1.2.0																															
ARRIBA		2.4.0																														
ARRIBA_FILTER			1.0	3.0.0	6.0.3																											
ARRIBA_VISUALISATION		2.4.0																														
CANCER_INTRONS_TO_VCF						3.11.0																										
CONTAMINATION_SKIPPED_LOW_READS							1.0.0																									
CTATSPLICING_STARTOCANCERINTRONS								0.0.3																								
FASTQC										0.12.1																						
FASTQC_FOR_FASTP										0.12.1																						
FUSIONINSPECTOR											1.12.0																					
FUSIONREPORT												2.1.5	null																			
GATK4_MARKDUPLICATES														4.4.0.0	1.17																	
GTF2BED																5.26.2																
KALLISTO_QUANT																	0.51.1															
KALLISTO_TO_TX2GENE_QC						3.11.0												1.0.0														
PICARD_COLLECTINSERTSIZEMETRICS																			3.1.0													
PICARD_COLLECTRNASEQMETRICS																			null													
PRESEQ_LCEXTRAP																				3.2.0												
PRESEQ_TO_MULTIQC						3.11.14															1.0.0											
RSEQC_BAMSTAT																						5.0.2										
RSEQC_INFEREXPERIMENT																						5.0.2										
RSEQC_INNERDISTANCE																						5.0.2										
RSEQC_JUNCTIONANNOTATION																						5.0.2										
RSEQC_JUNCTIONSATURATION																						5.0.2										
RSEQC_READDISTRIBUTION																						5.0.2										
RSEQC_READDUPLICATION																						5.0.2										
RSEQC_TO_MULTIQC						3.11.14																	1.0.0									
SAMTOOLS_INDEX_ALIGNMENT_CRAM															1.17																	
SAMTOOLS_INDEX_STAR_ALIGNMENT															1.17																	
SAMTOOLS_VIEW_ALIGNMENT_CRAM															1.17																	
SEQTOOL_TO_MULTIQC						3.11.14																		1.0.0								
STARFUSION											1.12.0																					
STARFUSION_FILTER				3.0.0	6.0.3																				1.0	2.4.1	unknown					
STAR_ALIGNMENT															1.16.1													2.7.10a0	5.1.0			
VCF_COLLECT						3.11.14																								2025-01-22/23:32		
Workflow																															v3.0.2-g7e7f68d	25.10.2
fastp									0.23.4