output/Logs/Info.log - Workdir - NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT (REGRESSION;L003)

File Info

Filename: output/Logs/Info.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/aa1b5a9d3f75194d8e8c9ba0875c1d/output/Logs/Info.log
Size: 2.8 KB
Task: NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT (REGRESSION;L003)
Attempt

Content

2026-06-03T21:45:46Z thread 440 Sample sheet being processed by common lib? Yes
2026-06-03T21:45:46Z thread 440 SampleSheet Settings: 
2026-06-03T21:45:46Z thread 440   OverrideCycles = Y150;I8;I8;Y150
2026-06-03T21:45:46Z thread 440 
2026-06-03T21:45:46Z thread 440 shared-thread-linux-native-asio output is disabled
2026-06-03T21:45:46Z thread 440 bcl-convert Version 4.4.6
2026-06-03T21:45:46Z thread 440 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-03T21:45:46Z thread 440 Command Line: --tiles s_3 --output-directory output --bcl-input-directory rundir --sample-sheet SampleSheet.csv 
2026-06-03T21:45:46Z thread 440 Conversion Begins.
2026-06-03T21:45:46Z thread 440 Input BCL Information:
2026-06-03T21:45:46Z thread 440     Read Structure: 2026-06-03T21:45:46Z thread 440 Y1502026-06-03T21:45:46Z thread 440 ;2026-06-03T21:45:46Z thread 440 I82026-06-03T21:45:46Z thread 440 ;2026-06-03T21:45:46Z thread 440 I82026-06-03T21:45:46Z thread 440 ;2026-06-03T21:45:46Z thread 440 Y1502026-06-03T21:45:46Z thread 440 
2026-06-03T21:45:46Z thread 440     RunInfo.xml file lists: 4 lanes, 4 tiles
2026-06-03T21:45:46Z thread 440     BCL file format: bcl.gz
2026-06-03T21:45:46Z thread 440     Positions file format: locs
2026-06-03T21:45:46Z thread 440     Filter file format: filter
2026-06-03T21:45:46Z thread 440 Conversion Information:
2026-06-03T21:45:46Z thread 440     Tile filtering: converting 1/4 tiles
2026-06-03T21:45:46Z thread 440     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:45:46Z thread 440     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:45:46Z thread 440     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:45:46Z thread 440     Sample Count: 2
2026-06-03T21:45:46Z thread 440     Expected number of sample FASTQ files to be created: 4
2026-06-03T21:45:46Z thread 440 # CPU hw threads available: 64
2026-06-03T21:45:46Z thread 440 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-03T21:45:46Z thread 440 SW compressors: 64
2026-06-03T21:45:46Z thread 440 SW decompressors: 32
2026-06-03T21:45:46Z thread 440 SW FASTQ compression level: 1
2026-06-03T21:45:48Z thread 440 Lane 3 Post-run Information:
2026-06-03T21:45:48Z thread 440     Total clusters: 5000000
2026-06-03T21:45:48Z thread 440     Total Genomic Reads: 10000000
2026-06-03T21:45:48Z thread 440     Total Genomic Input Gigabases 1.50
2026-06-03T21:45:48Z thread 440     Minimum reads for a sample: 4999932
2026-06-03T21:45:48Z thread 440     Maximum reads for a sample: 5000068
2026-06-03T21:45:48Z thread 440     Average reads per sample: 5000000.00
2026-06-03T21:45:48Z thread 440     Undetermined reads: 0
2026-06-03T21:45:48Z thread 440 Conversion Complete.