File Info

Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/a145860024973edd81d53348dbf54c/.command.sh
Size
559 bytes
Task
NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (rna_s1200_S21)
Attempt

Content

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#!/bin/bash -euo pipefail
cat rna_s1200_S21_S1_L001_R1_001.fastq.gz rna_s1200_S21_S1_L002_R1_001.fastq.gz rna_s1200_S21_S1_L003_R1_001.fastq.gz rna_s1200_S21_S1_L004_R1_001.fastq.gz > rna_s1200_S21_R1.fastq.gz
cat rna_s1200_S21_S1_L001_R2_001.fastq.gz rna_s1200_S21_S1_L002_R2_001.fastq.gz rna_s1200_S21_S1_L003_R2_001.fastq.gz rna_s1200_S21_S1_L004_R2_001.fastq.gz > rna_s1200_S21_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS