Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/a08acf255317d4582ce245333d6e77/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/4d40ad7538894f3daef343612a34d4/rna_s1221_S42.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/a08acf255317d4582ce245333d6e77/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory