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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/610aecaa9762b9a84928c4c2b0bb2f/rna_s1200_S21_preseq_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/33ad4dd966ca64ae37bb7f2252f5a4/rna_s1221_S42_contamination_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/8fdaf227bd59e98824895e8cf437e2/rna_s1221_S42_rseqc_extra_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/b961083fe6a475ecd54dad333722f7/rna_s1221_S42_trimmed_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/62341d698de95ff55a63a07e8f4d68/rna_s1221_S42_combined_fusions_arriba_visualisation.pdf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/35a2b6edd6a663d929973d1de6ec7c/rna_s1200_S21.fastp.html
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/903d31aaa433cced5c511733d56801/rna_s1200_S21.ReadsPerGene.out.tab
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/8758e32f0d9ea86ff03da700c648be/rna_s1221_S42.infer_experiment.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/0ccbf003eb876b35c0b95c609032e5/rna_s1221_S42.fastp.html
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/4d40ad7538894f3daef343612a34d4/rna_s1221_S42.Log.final.out
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/8e/596f4ad13a31e4cb7ea526f6bfa719/workflow_summary_mqc.yaml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/3c748c73206d80cef92263e262ff99/rna_s1200_S21_rseqc_extra_mqc.tsv
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/378949a32ab7d001f6b4cafd925006/rna_s1200_S21.pos.DupRate.xls
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/10a656e8609596777533f6aca074c5/rna_s1221_S42_kallisto_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/0ccbf003eb876b35c0b95c609032e5/rna_s1221_S42.fastp.json
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/5788ba3461dc8f95af5a5bef7e5bbb/rna_s1200_S21_collectinsertsize.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/3bd69399c453f24e7dec10206ce319/rna_s1221_S42_collectinsertsize.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/07b58e0e430298e528ff4bf20fd6c6/rna_s1221_S42.pos.DupRate.xls
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/9fe8b9ca64f91a5488fdeef79d7239/rna_s1221_S42_rna_metrics.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/aaa6fda3fd904bba78d6bbcb7eb1e0/rna_s1200_S21_contamination_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/4d40ad7538894f3daef343612a34d4/rna_s1221_S42.ReadsPerGene.out.tab
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==> STAGING COMPLETE (60 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.MFOdBA0TJT
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 95/95  
|    custom_content | preseq_metrics: Found 2 General Statistics columns
|    custom_content | rna_contamination: Found 2 General Statistics columns
|    custom_content | rseqc_extra_metrics: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|    custom_content | kallisto_qc_metrics: Found 2 General Statistics columns
|    custom_content | seqtools_metrics: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|          kallisto | Found 2 reports
|            picard | Found 2 InsertSizeMetrics reports
|            picard | Found 2 MarkDuplicates reports
|            picard | Found 2 RnaSeqMetrics reports
|            preseq | Found 2 reports
|             rseqc | Found 2 read_distribution reports
|             rseqc | Found 2 inner_distance reports
|             rseqc | Found 2 read_duplication reports
|             rseqc | Found 2 junction_annotation reports
|             rseqc | Found 2 junction_saturation reports
|             rseqc | Found 2 infer_experiment reports
|             rseqc | Found 2 bam_stat reports
|              star | Found 2 reports and 2 gene count files
|             fastp | Found 2 reports
|            fastqc | Found 8 reports
|            fastqc | Found 4 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete