output/Logs/Info.log - Workdir - NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT (REGRESSION;L001)

File Info

Filename: output/Logs/Info.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/b18a0e96d72ad518a890e0af7a26e0/output/Logs/Info.log
Size: 2.8 KB
Task: NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT (REGRESSION;L001)
Attempt

Content

2026-06-03T21:45:43Z thread 377 Sample sheet being processed by common lib? Yes
2026-06-03T21:45:43Z thread 377 SampleSheet Settings: 
2026-06-03T21:45:43Z thread 377   OverrideCycles = Y150;I8;I8;Y150
2026-06-03T21:45:43Z thread 377 
2026-06-03T21:45:43Z thread 377 shared-thread-linux-native-asio output is disabled
2026-06-03T21:45:43Z thread 377 bcl-convert Version 4.4.6
2026-06-03T21:45:43Z thread 377 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-03T21:45:43Z thread 377 Command Line: --tiles s_1 --output-directory output --bcl-input-directory rundir --sample-sheet SampleSheet.csv 
2026-06-03T21:45:43Z thread 377 Conversion Begins.
2026-06-03T21:45:43Z thread 377 Input BCL Information:
2026-06-03T21:45:43Z thread 377     Read Structure: 2026-06-03T21:45:43Z thread 377 Y1502026-06-03T21:45:43Z thread 377 ;2026-06-03T21:45:43Z thread 377 I82026-06-03T21:45:43Z thread 377 ;2026-06-03T21:45:43Z thread 377 I82026-06-03T21:45:43Z thread 377 ;2026-06-03T21:45:43Z thread 377 Y1502026-06-03T21:45:43Z thread 377 
2026-06-03T21:45:43Z thread 377     RunInfo.xml file lists: 4 lanes, 4 tiles
2026-06-03T21:45:43Z thread 377     BCL file format: bcl.gz
2026-06-03T21:45:43Z thread 377     Positions file format: locs
2026-06-03T21:45:43Z thread 377     Filter file format: filter
2026-06-03T21:45:43Z thread 377 Conversion Information:
2026-06-03T21:45:43Z thread 377     Tile filtering: converting 1/4 tiles
2026-06-03T21:45:43Z thread 377     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:45:43Z thread 377     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:45:43Z thread 377     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T21:45:43Z thread 377     Sample Count: 2
2026-06-03T21:45:43Z thread 377     Expected number of sample FASTQ files to be created: 4
2026-06-03T21:45:43Z thread 377 # CPU hw threads available: 64
2026-06-03T21:45:43Z thread 377 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-03T21:45:43Z thread 377 SW compressors: 64
2026-06-03T21:45:43Z thread 377 SW decompressors: 32
2026-06-03T21:45:43Z thread 377 SW FASTQ compression level: 1
2026-06-03T21:45:45Z thread 377 Lane 1 Post-run Information:
2026-06-03T21:45:45Z thread 377     Total clusters: 5000000
2026-06-03T21:45:45Z thread 377     Total Genomic Reads: 10000000
2026-06-03T21:45:45Z thread 377     Total Genomic Input Gigabases 1.50
2026-06-03T21:45:45Z thread 377     Minimum reads for a sample: 4999006
2026-06-03T21:45:45Z thread 377     Maximum reads for a sample: 5000994
2026-06-03T21:45:45Z thread 377     Average reads per sample: 5000000.00
2026-06-03T21:45:45Z thread 377     Undetermined reads: 0
2026-06-03T21:45:45Z thread 377 Conversion Complete.