Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/47d8554b9eff121228d9b6c848f752/rna_s1200_S21.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/c9e356565db79637e8e3f5c07c9386/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/c9e356565db79637e8e3f5c07c9386/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory