Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/903d31aaa433cced5c511733d56801/rna_s1200_S21.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/fd0d0d76e4c40e93ab4f5c69125640/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/fd0d0d76e4c40e93ab4f5c69125640/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
paired = 9881192
unpaired = 95904
MERGED PAIRED END READS = 9881192
MATES PROCESSED = 19858288
TOTAL READS = 9977096
DISTINCT READS = 8.02727e+06
DISTINCT COUNTS = 136
MAX COUNT = 10313
COUNTS OF 1 = 6.6993e+06
MAX TERMS = 78
OBSERVED COUNTS (10314)
1 6699305
2 1033535
3 191453
4 50795
5 19833
6 10123
7 6002
8 3756
9 2688
10 1909
11 1415
12 1097
13 863
14 663
15 545
16 409
17 341
18 288
19 278
20 217
21 171
22 163
23 141
24 121
25 106
26 98
27 79
28 60
29 61
30 60
31 49
32 38
33 46
34 38
35 40
36 30
37 28
38 23
39 27
40 30
41 24
42 19
43 16
44 8
45 12
46 14
47 12
48 9
49 3
50 6
51 10
52 12
53 17
54 5
55 6
56 5
57 8
58 3
59 6
60 4
61 7
62 4
63 7
64 2
65 6
66 4
67 5
68 2
69 3
70 8
71 2
72 1
73 2
74 2
75 1
76 6
77 1
78 8
80 2
82 3
83 3
84 1
85 2
86 1
87 3
88 1
90 2
93 2
94 4
95 1
97 1
98 1
99 5
101 1
103 1
104 1
106 1
108 1
109 2
110 2
113 1
114 1
116 2
121 1
123 2
124 1
127 1
128 1
129 1
131 1
133 1
140 1
153 1
155 1
157 1
158 1
160 1
163 1
166 1
167 1
175 1
176 1
177 1
183 1
198 1
199 1
223 1
233 1
245 1
253 1
276 1
294 1
315 1
317 1
402 1
10313 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........................................................................
............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]