Sample Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30 Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION RSeQC_mqc-generalstats-rseqc-proper_pairs_percent STAR_mqc-generalstats-star-uniquely_mapped_percent STAR_mqc-generalstats-star-uniquely_mapped fastp_mqc-generalstats-fastp-pct_duplication fastp_mqc-generalstats-fastp-after_filtering_q30_rate fastp_mqc-generalstats-fastp-after_filtering_q30_bases fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads fastp_mqc-generalstats-fastp-after_filtering_gc_content fastp_mqc-generalstats-fastp-pct_surviving fastp_mqc-generalstats-fastp-pct_adapter Kallisto_mqc-generalstats-kallisto-fragment_length Kallisto_mqc-generalstats-kallisto-percent_aligned Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences
rna_s1200_S21 181.2 166.0 0.002 4.584 2.972 0.0 0.003 10.895 3.446 0.0 6.696 9999000000.0 53979070.0 Skipped N/A 19200129.0 0.9607 19875412.0 0.003853 0.183621 16225876.0 0.945347 0.972121 0.049933 0.027879 15339088.0 7832369.0 810206.0 224622.0 34.559207 5.0 0.293198 0.084685 0.985625 0.0 0.184331 90.33600244662823 95.95 9534804.0 13.3191 0.984633 2750334612.0 19875412.0 0.535761 99.37706 32.738935000000005
rna_s1200_S21_1 181.2 97.82623877180508 9721684.0 55.1196738153078 53.0 150.0 150 27.27272727272727 10000000.0
rna_s1200_S21_2 51.30713513081027 53.0 150.0 150 18.181818181818183 10000000.0
rna_s1200_S21_trimmed_1 55.20979973333161 53.0 140.52089164239715 150 18.181818181818183 9937706.0 55.20979973333161 53.0 140.52089164239715 150 18.181818181818183 9937706.0
rna_s1200_S21_trimmed_2 51.43328044275465 53.0 140.53251514987463 150 9.090909090909092 9937706.0 51.43328044275465 53.0 140.53251514987463 150 9.090909090909092 9937706.0
rna_s1221_S42 175.4 161.0 0.005 4.713 2.826 0.0 0.009 11.321 3.189 0.0 6.774 9999000000.0 53000545.0 Skipped N/A 18864613.0 0.9584 19864012.0 0.004391 0.198705 15916933.0 0.936077 0.962008 0.058443 0.037992 14899481.0 7595968.0 930229.0 299983.0 32.870035 5.0 0.28172 0.079333 0.98502 0.0 0.199581 80.25001383886074 94.32 9368114.0 13.947899999999999 0.983893 2705779238.0 19864012.0 0.533166 99.32006 36.832589999999996
rna_s1221_S42_1 175.4 96.36796433671103 9571272.0 57.988386175167875 52.0 150.0 150 27.27272727272727 10000000.0
rna_s1221_S42_2 52.2829601665107 53.0 150.0 150 18.181818181818183 10000000.0
rna_s1221_S42_trimmed_1 58.06626133669685 53.0 138.4228959386452 150 18.181818181818183 9932006.0 58.06626133669685 53.0 138.4228959386452 150 18.181818181818183 9932006.0
rna_s1221_S42_trimmed_2 52.384744289571934 53.0 138.44541374622608 150 9.090909090909092 9932006.0 52.384744289571934 53.0 138.44541374622608 150 9.090909090909092 9932006.0