Module Section Sample Name Source
Kallisto all_sections rna_s1221_S42_1 /tmp/nxf.Dwd9TSkHTJ/16/rna_s1221_S42.log
Kallisto all_sections rna_s1200_S21_1 /tmp/nxf.Dwd9TSkHTJ/15/rna_s1200_S21.log
Picard DuplicationMetrics rna_s1200_S21 /tmp/nxf.Dwd9TSkHTJ/37/rna_s1200_S21.md.bam.metrics
Picard DuplicationMetrics rna_s1221_S42 /tmp/nxf.Dwd9TSkHTJ/38/rna_s1221_S42.md.bam.metrics
Preseq all_sections rna_s1221_S42.lc_extrap /tmp/nxf.Dwd9TSkHTJ/24/rna_s1221_S42.lc_extrap.txt
Preseq all_sections rna_s1200_S21.lc_extrap /tmp/nxf.Dwd9TSkHTJ/23/rna_s1200_S21.lc_extrap.txt
RSeQC read_distribution rna_s1200_S21 /tmp/nxf.Dwd9TSkHTJ/39/rna_s1200_S21.read_distribution.txt
RSeQC read_distribution rna_s1221_S42 /tmp/nxf.Dwd9TSkHTJ/40/rna_s1221_S42.read_distribution.txt
RSeQC inner_distance rna_s1200_S21 /tmp/nxf.Dwd9TSkHTJ/35/rna_s1200_S21.inner_distance_freq.txt
RSeQC inner_distance rna_s1221_S42 /tmp/nxf.Dwd9TSkHTJ/36/rna_s1221_S42.inner_distance_freq.txt
RSeQC read_duplication rna_s1221_S42 /tmp/nxf.Dwd9TSkHTJ/42/rna_s1221_S42.pos.DupRate.xls
RSeQC read_duplication rna_s1200_S21 /tmp/nxf.Dwd9TSkHTJ/41/rna_s1200_S21.pos.DupRate.xls
RSeQC junction_annotation rna_s1221_S42 /tmp/nxf.Dwd9TSkHTJ/44/rna_s1221_S42.junction_annotation.log
RSeQC junction_annotation rna_s1200_S21 /tmp/nxf.Dwd9TSkHTJ/43/rna_s1200_S21.junction_annotation.log
RSeQC junction_saturation rna_s1221_S42 /tmp/nxf.Dwd9TSkHTJ/34/rna_s1221_S42.junctionSaturation_plot.r
RSeQC junction_saturation rna_s1200_S21 /tmp/nxf.Dwd9TSkHTJ/33/rna_s1200_S21.junctionSaturation_plot.r
RSeQC infer_experiment rna_s1221_S42 /tmp/nxf.Dwd9TSkHTJ/30/rna_s1221_S42.infer_experiment.txt
RSeQC infer_experiment rna_s1200_S21 /tmp/nxf.Dwd9TSkHTJ/29/rna_s1200_S21.infer_experiment.txt
RSeQC bam_stat rna_s1221_S42 /tmp/nxf.Dwd9TSkHTJ/32/rna_s1221_S42.bam_stat.txt
RSeQC bam_stat rna_s1200_S21 /tmp/nxf.Dwd9TSkHTJ/31/rna_s1200_S21.bam_stat.txt
STAR SummaryLog rna_s1221_S42 /tmp/nxf.Dwd9TSkHTJ/22/rna_s1221_S42.Log.final.out
STAR SummaryLog rna_s1200_S21 /tmp/nxf.Dwd9TSkHTJ/21/rna_s1200_S21.Log.final.out
STAR ReadsPerGene rna_s1200_S21 /tmp/nxf.Dwd9TSkHTJ/19/rna_s1200_S21.ReadsPerGene.out.tab
STAR ReadsPerGene rna_s1221_S42 /tmp/nxf.Dwd9TSkHTJ/20/rna_s1221_S42.ReadsPerGene.out.tab
fastp all_sections rna_s1221_S42 /tmp/nxf.Dwd9TSkHTJ/4/rna_s1221_S42.fastp.json
fastp all_sections rna_s1200_S21 /tmp/nxf.Dwd9TSkHTJ/3/rna_s1200_S21.fastp.json
FastQC (raw) all_sections rna_s1221_S42_1 /tmp/nxf.Dwd9TSkHTJ/7/rna_s1221_S42_1_fastqc.zip
FastQC (raw) all_sections rna_s1221_S42_trimmed_1 /tmp/nxf.Dwd9TSkHTJ/13/rna_s1221_S42_trimmed_1_fastqc.zip
FastQC (raw) all_sections rna_s1200_S21_trimmed_2 /tmp/nxf.Dwd9TSkHTJ/12/rna_s1200_S21_trimmed_2_fastqc.zip
FastQC (raw) all_sections rna_s1221_S42_2 /tmp/nxf.Dwd9TSkHTJ/8/rna_s1221_S42_2_fastqc.zip
FastQC (raw) all_sections rna_s1221_S42_trimmed_2 /tmp/nxf.Dwd9TSkHTJ/14/rna_s1221_S42_trimmed_2_fastqc.zip
FastQC (raw) all_sections rna_s1200_S21_2 /tmp/nxf.Dwd9TSkHTJ/10/rna_s1200_S21_2_fastqc.zip
FastQC (raw) all_sections rna_s1200_S21_1 /tmp/nxf.Dwd9TSkHTJ/9/rna_s1200_S21_1_fastqc.zip
FastQC (raw) all_sections rna_s1200_S21_trimmed_1 /tmp/nxf.Dwd9TSkHTJ/11/rna_s1200_S21_trimmed_1_fastqc.zip
FastQC (trimmed) all_sections rna_s1221_S42_trimmed_1 /tmp/nxf.Dwd9TSkHTJ/13/rna_s1221_S42_trimmed_1_fastqc.zip
FastQC (trimmed) all_sections rna_s1200_S21_trimmed_2 /tmp/nxf.Dwd9TSkHTJ/12/rna_s1200_S21_trimmed_2_fastqc.zip
FastQC (trimmed) all_sections rna_s1221_S42_trimmed_2 /tmp/nxf.Dwd9TSkHTJ/14/rna_s1221_S42_trimmed_2_fastqc.zip
FastQC (trimmed) all_sections rna_s1200_S21_trimmed_1 /tmp/nxf.Dwd9TSkHTJ/11/rna_s1200_S21_trimmed_1_fastqc.zip