Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/32bddd8c818ec1011f7246ba4cca74/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/32bddd8c818ec1011f7246ba4cca74/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/98ff747aa3fda20ffcbf9d9f1dae67/rna_s1221_S42.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/c909a55d13daa4ebee12b897a14872/rna_s1221_S42
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: rna_s1221_S42/abundance.h5
Successfully converted rna_s1221_S42/abundance.h5 to rna_s1221_S42_kallisto_mqc.tsv
  Sample: rna_s1221_S42
  Mean Fragment Length: 175.4 bp
  Median Fragment Length: 161.0 bp
  pct_mito_est_counts: 0.005%
  pct_ribo_est_counts: 4.713%
  pct_hk_est_counts: 2.826%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.009%
  pct_ribo_tpm: 11.321%
  pct_hk_tpm: 3.189%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.774%