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- Filename
- rna_s1200_S21.arriba.fusions.filtered_pass_only.tsv
- Full Path
- s3://natera-rnd-pltf-dev-s3-gitlab-results/rnafusion/build2803241/baseline-run/63723170/arriba/rna_s1200_S21.arriba.fusions.filtered_pass_only.tsv
- Size
- 12.5 KB
- Workflow Run
- gitlab-rnafusion-build2803241-baseline-run-63723170
- Published
- Jun 05, 2026 5:11 PM
Content
View in new tab| #gene1 | gene2 | strand1(gene/fusion) | strand2(gene/fusion) | breakpoint1 | breakpoint2 | site1 | site2 | type | split_reads1 | split_reads2 | discordant_mates | coverage1 | coverage2 | confidence | reading_frame | tags | retained_protein_domains | closest_genomic_breakpoint1 | closest_genomic_breakpoint2 | gene_id1 | gene_id2 | transcript_id1 | transcript_id2 | direction1 | direction2 | filters | fusion_transcript | peptide_sequence | read_identifiers | breakpoint_ID | vaf1 | vaf2 | vaf_avg | total_reads | blacklisted | aih_curated_reason | FILTER | filter_reason |
| FGFR3 | TACC3 | +/+ | +/+ | chr4:1806934 | chr4:1739702 | CDS/splice-site | CDS/splice-site | duplication | 21 | 24 | 1 | 75 | 141 | high | in-frame | . | Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(100%)|Transforming_acidic_coiled-coil-containing_protein_(TACC)__C-terminal(95%) | . | . | ENSG00000068078.20 | ENSG00000013810.20 | ENST00000412135.7 | ENST00000651472.1 | downstream | upstream | duplicates(5),mismatches(1) | CTGTGGAGGAGCTCTTCAAGCTGCTGAAGGAGGGCCACCGCATGGACAAGCCCGCCAACTGCACACACGACCT___GTACATGATCATGCGGGAGTGCTGGCATGCCGCGCCCTCCCAGAGGCCCACCTTCAAGCAGCTGGTGGAGGACCTGGACCGTGTCCTTACCGTGACGTCCACCGAC|GTAAAGGCGACACAGGAGGAGAACCGGGAGCTGAGGAGCAGGTGTGAGGAGCTCCACGGGAAGAACCTGGAACTGGG___GAAGATCATGGACAGGTTCGAAGAGGTTGTGTACCAGGCCATGG___AGGAAGTTCAGAAGCAGAAGGAACTTTCCAAAGCTGAAATCCAGAA | VEELFKLLKEGHRMDKPANCTHDLYMIMRECWHAAPSQRPTFKQLVEDLDRVLTVTSTD|VKATQEENRELRSRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQ | SYNTHESIZER:1:REGRESSION:1:1101:34880460:34890460,SYNTHESIZER:1:REGRESSION:1:1101:41244120:41254120,SYNTHESIZER:1:REGRESSION:1:1101:41260000:41270000,SYNTHESIZER:1:REGRESSION:1:1101:49350600:49360600,SYNTHESIZER:1:REGRESSION:1:1101:49402150:49412150,SYNTHESIZER:1:REGRESSION:1:1101:68040290:68050290,SYNTHESIZER:1:REGRESSION:1:1101:83249940:83259940,SYNTHESIZER:1:REGRESSION:1:1101:97233870:97243870,SYNTHESIZER:1:REGRESSION:2:1101:30722060:30732060,SYNTHESIZER:1:REGRESSION:2:1101:57524010:57534010,SYNTHESIZER:1:REGRESSION:2:1101:61323240:61333240,SYNTHESIZER:1:REGRESSION:2:1101:65879710:65889710,SYNTHESIZER:1:REGRESSION:3:1101:26578090:26588090,SYNTHESIZER:1:REGRESSION:3:1101:33716140:33726140,SYNTHESIZER:1:REGRESSION:3:1101:41854800:41864800,SYNTHESIZER:1:REGRESSION:3:1101:49608860:49618860,SYNTHESIZER:1:REGRESSION:3:1101:61200620:61210620,SYNTHESIZER:1:REGRESSION:3:1101:69111040:69121040,SYNTHESIZER:1:REGRESSION:3:1101:72481000:72491000,SYNTHESIZER:1:REGRESSION:4:1101:13036270:13046270,SYNTHESIZER:1:REGRESSION:4:1101:22353200:22363200,SYNTHESIZER:1:REGRESSION:4:1101:28479970:28489970,SYNTHESIZER:1:REGRESSION:4:1101:52511650:52521650,SYNTHESIZER:1:REGRESSION:4:1101:69995900:70005900,SYNTHESIZER:1:REGRESSION:1:1101:28051130:28061130,SYNTHESIZER:1:REGRESSION:1:1101:50174490:50184490,SYNTHESIZER:1:REGRESSION:1:1101:52961340:52971340,SYNTHESIZER:1:REGRESSION:1:1101:6243410:6253410,SYNTHESIZER:1:REGRESSION:1:1101:80529760:80539760,SYNTHESIZER:1:REGRESSION:1:1101:8425410:8435410,SYNTHESIZER:1:REGRESSION:1:1101:87889880:87899880,SYNTHESIZER:1:REGRESSION:1:1101:99213420:99223420,SYNTHESIZER:1:REGRESSION:2:1101:27149600:27159600,SYNTHESIZER:1:REGRESSION:2:1101:44764460:44774460,SYNTHESIZER:1:REGRESSION:2:1101:54154280:54164280,SYNTHESIZER:1:REGRESSION:2:1101:56369770:56379770,SYNTHESIZER:1:REGRESSION:2:1101:90495290:90505290,SYNTHESIZER:1:REGRESSION:2:1101:9544450:9554450,SYNTHESIZER:1:REGRESSION:3:1101:35280880:35290880,SYNTHESIZER:1:REGRESSION:3:1101:60441500:60451500,SYNTHESIZER:1:REGRESSION:3:1101:65504970:65514970,SYNTHESIZER:1:REGRESSION:3:1101:65791540:65801540,SYNTHESIZER:1:REGRESSION:3:1101:71258560:71268560,SYNTHESIZER:1:REGRESSION:3:1101:87128380:87138380,SYNTHESIZER:1:REGRESSION:3:1101:93427820:93437820,SYNTHESIZER:1:REGRESSION:4:1101:21171910:21181910,SYNTHESIZER:1:REGRESSION:4:1101:4577000:4587000,SYNTHESIZER:1:REGRESSION:4:1101:57509800:57519800,SYNTHESIZER:1:REGRESSION:4:1101:67524780:67534780,SYNTHESIZER:1:REGRESSION:4:1101:79947230:79957230,SYNTHESIZER:1:REGRESSION:4:1101:6194060:6204060,SYNTHESIZER:1:REGRESSION:4:1101:71335440:71345440 | chr4:1806934-chr4:1739702 | 0.22279792746113988 | 0.14803625377643503 | 0.18541709061878747 | 46 | False | PASS | ||
| LMNA | NTRK1 | +/+ | +/+ | chr1:156130773 | chr1:156874906 | CDS/splice-site | CDS/splice-site | deletion | 12 | 13 | 0 | 349 | 70 | high | in-frame | . | Intermediate_filament_protein(39%)|Protein_kinase_domain(100%),Tyrosine_kinase_receptor_A_trans-membrane_domain(95%) | . | . | ENSG00000160789.23 | ENSG00000198400.13 | ENST00000368301.6 | ENST00000392302.7 | downstream | upstream | duplicates(4),low_entropy(1) | GCTCGGCTGAAGGACCTGGAGGCTCTGCTGAACTCCAAGGAGGCCGCACTGAGCACTGCTCTCAGTGAGAAGCGCACGCTGGAGGGCGAGCTGCATGATCTGCGGGGCCAGGTGGCCAAG|GTCTCGGTGGCTGTGGGCCTGGCCGTCTTTGCCTGCCTCTTCCTTTCTACGCTGCTCCTTGTGCTCAACAAATGTGGACGGAGAAACAAGTTTGGGATCAACC___GCCCGGCTGTGCTGGCTCCAGAGGATGGGCTGGCCATGTCCCTGCATTTCATG | ARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAK|VSVAVGLAVFACLFLSTLLLVLNKCGRRNKFGINRPAVLAPEDGLAMSLHF | SYNTHESIZER:1:REGRESSION:1:1101:36363320:36373320,SYNTHESIZER:1:REGRESSION:1:1101:51281320:51291320,SYNTHESIZER:1:REGRESSION:1:1101:60878880:60888880,SYNTHESIZER:1:REGRESSION:1:1101:63699200:63709200,SYNTHESIZER:1:REGRESSION:1:1101:74283100:74293100,SYNTHESIZER:1:REGRESSION:1:1101:93263280:93273280,SYNTHESIZER:1:REGRESSION:2:1101:46809580:46819580,SYNTHESIZER:1:REGRESSION:2:1101:49502720:49512720,SYNTHESIZER:1:REGRESSION:3:1101:61339670:61349670,SYNTHESIZER:1:REGRESSION:4:1101:13375770:13385770,SYNTHESIZER:1:REGRESSION:4:1101:22891390:22901390,SYNTHESIZER:1:REGRESSION:4:1101:83123410:83133410,SYNTHESIZER:1:REGRESSION:4:1101:92420240:92430240,SYNTHESIZER:1:REGRESSION:4:1101:96862140:96872140,SYNTHESIZER:1:REGRESSION:1:1101:67566700:67576700,SYNTHESIZER:1:REGRESSION:2:1101:31411120:31421120,SYNTHESIZER:1:REGRESSION:2:1101:48911230:48921230,SYNTHESIZER:1:REGRESSION:2:1101:53244670:53254670,SYNTHESIZER:1:REGRESSION:2:1101:58614140:58624140,SYNTHESIZER:1:REGRESSION:2:1101:837380:847380,SYNTHESIZER:1:REGRESSION:2:1101:96068060:96078060,SYNTHESIZER:1:REGRESSION:3:1101:10266310:10276310,SYNTHESIZER:1:REGRESSION:3:1101:28659750:28669750,SYNTHESIZER:1:REGRESSION:3:1101:71272030:71282030,SYNTHESIZER:1:REGRESSION:3:1101:7999190:8009190,SYNTHESIZER:1:REGRESSION:3:1101:86272920:86282920,SYNTHESIZER:1:REGRESSION:3:1101:91269240:91279240,SYNTHESIZER:1:REGRESSION:4:1101:19005640:19015640,SYNTHESIZER:1:REGRESSION:4:1101:46042090:46052090,SYNTHESIZER:1:REGRESSION:4:1101:50758220:50768220 | chr1:156130773-chr1:156874906 | 0.0332409972299169 | 0.1566265060240964 | 0.09493375162700665 | 25 | False | PASS | ||
| FGFR3 | BAIAP2L1 | +/+ | -/- | chr4:1806934 | chr7:98362432 | CDS/splice-site | CDS/splice-site | translocation | 17 | 2 | 1 | 75 | 11 | high | in-frame | . | Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(100%)|IRSp53/MIM_homology_domain(99%),Variant_SH3_domain(100%) | . | . | ENSG00000068078.20 | ENSG00000006453.14 | ENST00000412135.7 | ENST00000005260.9 | downstream | downstream | duplicates(9),mismatches(1) | CTGTGGAGGAGCTCTTCAAGCTGCTGAAGGAGGGCCACCGCATGGACAAGCCCGCCAACTGCACACACGACCT___GTACATGATCATGCGGGAGTGCTGGCATGCCGCGCCCTCCCAGAGGCCCACCTTCAAGCAGCTGGTGGAGGACCTGGACCGTGTCCTTACCGTGACGTCCACCGAC|AATGTTATGGAACAGTTCAATCCTGGGCTGCGAAATTTAATAAACCTGGGGAAAAATTATGAGAAAGCTGTAAACG___CTATGATCCTGGCAGGAAAAGCCTACTACGATGGAGTGGCCAAGATCGGTGAGATTGCCACTGGGTCCCCCGT | VEELFKLLKEGHRMDKPANCTHDLYMIMRECWHAAPSQRPTFKQLVEDLDRVLTVTSTD|NVMEQFNPGLRNLINLGKNYEKAVNAMILAGKAYYDGVAKIGEIATGSP | SYNTHESIZER:1:REGRESSION:1:1101:11271270:11281270,SYNTHESIZER:1:REGRESSION:1:1101:35109030:35119030,SYNTHESIZER:1:REGRESSION:1:1101:38838690:38848690,SYNTHESIZER:1:REGRESSION:1:1101:40392150:40402150,SYNTHESIZER:1:REGRESSION:1:1101:42849500:42859500,SYNTHESIZER:1:REGRESSION:1:1101:46057530:46067530,SYNTHESIZER:1:REGRESSION:1:1101:54511420:54521420,SYNTHESIZER:1:REGRESSION:1:1101:66861940:66871940,SYNTHESIZER:1:REGRESSION:1:1101:84946680:84956680,SYNTHESIZER:1:REGRESSION:2:1101:42089380:42099380,SYNTHESIZER:1:REGRESSION:2:1101:55616890:55626890,SYNTHESIZER:1:REGRESSION:2:1101:56578990:56588990,SYNTHESIZER:1:REGRESSION:2:1101:76883530:76893530,SYNTHESIZER:1:REGRESSION:2:1101:86153140:86163140,SYNTHESIZER:1:REGRESSION:3:1101:15185210:15195210,SYNTHESIZER:1:REGRESSION:3:1101:28128910:28138910,SYNTHESIZER:1:REGRESSION:3:1101:58463390:58473390,SYNTHESIZER:1:REGRESSION:3:1101:74943610:74953610,SYNTHESIZER:1:REGRESSION:3:1101:87706670:87716670,SYNTHESIZER:1:REGRESSION:4:1101:41316680:41326680,SYNTHESIZER:1:REGRESSION:4:1101:4348500:4358500,SYNTHESIZER:1:REGRESSION:4:1101:5140310:5150310,SYNTHESIZER:1:REGRESSION:4:1101:57102750:57112750,SYNTHESIZER:1:REGRESSION:4:1101:8342020:8352020,SYNTHESIZER:1:REGRESSION:4:1101:94707700:94717700,SYNTHESIZER:1:REGRESSION:1:1101:10416680:10426680,SYNTHESIZER:1:REGRESSION:3:1101:39082850:39092850,SYNTHESIZER:1:REGRESSION:2:1101:20960190:20970190,SYNTHESIZER:1:REGRESSION:3:1101:20963300:20973300,SYNTHESIZER:1:REGRESSION:4:1101:60973030:60983030 | chr4:1806934-chr7:98362432 | 0.1891891891891892 | 0.18518518518518517 | 0.1871871871871872 | 20 | False | PASS | ||
| ETV6 | NTRK3 | +/+ | -/- | chr12:11869969 | chr15:87940753 | CDS/splice-site | CDS/splice-site | translocation | 5 | 6 | 0 | 195 | 11 | high | in-frame | . | Sterile_alpha_motif_(SAM)/Pointed_domain(100%)|Protein_kinase_domain(100%) | . | . | ENSG00000139083.11 | ENSG00000140538.16 | ENST00000396373.9 | ENST00000394480.6 | downstream | downstream | duplicates(1) | AGGCTCTCCGAGGACGGGCTGCATAGGGAAGGGAAGCCCATCAACCTCTCTCATCGGGAAGACCTGGCTTACATGAACCACATCATGGTCTCTGTCTCCCCGCCTGAAGAGCACGCCATGCCCATTGGGAGAATAGCAG|ATGTGCAGCACATTAAGAGGAGAGACATCGTGCTGAAGCGAGAACTGGGTGAGGGAGCCTTTGGAAAGGTCTTCCTGGCCGAGTGCTACAACCTCAGCCCGACCAAGGACAAGATGCTTGTGGCTGTGAAG___GCCCTGAAGGATCCCACC | RLSEDGLHREGKPINLSHREDLAYMNHIMVSVSPPEEHAMPIGRIA|dVQHIKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP | SYNTHESIZER:1:REGRESSION:1:1101:89693730:89703730,SYNTHESIZER:1:REGRESSION:3:1101:96422090:96432090,SYNTHESIZER:1:REGRESSION:4:1101:14366840:14376840,SYNTHESIZER:1:REGRESSION:4:1101:46242410:46252410,SYNTHESIZER:1:REGRESSION:4:1101:83513290:83523290,SYNTHESIZER:1:REGRESSION:1:1101:46890280:46900280,SYNTHESIZER:1:REGRESSION:1:1101:62249160:62259160,SYNTHESIZER:1:REGRESSION:1:1101:83615090:83625090,SYNTHESIZER:1:REGRESSION:2:1101:30913640:30923640,SYNTHESIZER:1:REGRESSION:2:1101:54231830:54241830,SYNTHESIZER:1:REGRESSION:4:1101:37250030:37260030,SYNTHESIZER:1:REGRESSION:4:1101:98267340:98277340 | chr12:11869969-chr15:87940753 | 0.025 | 0.35294117647058826 | 0.18897058823529414 | 11 | False | PASS | ||
| KIF5B | RET | -/- | +/+ | chr10:32017143 | chr10:43114480 | CDS/splice-site | CDS/splice-site | inversion | 1 | 9 | 0 | 153 | 27 | high | in-frame | . | Kinesin_motor_domain(100%)|Protein_kinase_domain(100%) | . | . | ENSG00000170759.11 | ENSG00000165731.20 | ENST00000302418.5 | ENST00000355710.8 | upstream | upstream | duplicates(2) | CGTGATCGCAAACGCTATCAGCAAGAAGTAGATCGCATAAAGGAAGCAGTCAGGTCAAAGAATATGGCCAGAAGAGGGCATTCTGCACAGATTG|ATCCACTGTGCGACGAGCTGTGCCGCACGGTGATCGCAGCCGCTGTCCTCTTCTCCTTCATCGTCTCGGTGCTGCTGTCTGCCTTCTGCATCCACTGCTACCACAAGTTTGCCCACAAGCCAC | RDRKRYQQEVDRIKEAVRSKNMARRGHSAQI|dPLCDELCRTVIAAAVLFSFIVSVLLSAFCIHCYHKFAHKP | SYNTHESIZER:1:REGRESSION:3:1101:98713850:98723850,SYNTHESIZER:1:REGRESSION:1:1101:50600840:50610840,SYNTHESIZER:1:REGRESSION:1:1101:62528620:62538620,SYNTHESIZER:1:REGRESSION:2:1101:54674900:54684900,SYNTHESIZER:1:REGRESSION:2:1101:61557770:61567770,SYNTHESIZER:1:REGRESSION:3:1101:1751670:1761670,SYNTHESIZER:1:REGRESSION:3:1101:90250180:90260180,SYNTHESIZER:1:REGRESSION:4:1101:10754780:10764780,SYNTHESIZER:1:REGRESSION:4:1101:22443210:22453210,SYNTHESIZER:1:REGRESSION:4:1101:533760:543760,SYNTHESIZER:1:REGRESSION:4:1101:89687090:89697090,SYNTHESIZER:1:REGRESSION:4:1101:96585540:96595540 | chr10:32017143-chr10:43114480 | 0.006493506493506494 | 0.25 | 0.12824675324675325 | 10 | False | PASS | ||
| PAX8 | PPARG | -/- | +/+ | chr2:113235394 | chr3:12379704 | CDS/splice-site | CDS/splice-site | translocation | 1 | 7 | 0 | 7 | 19 | high | in-frame | . | 'Paired_box'_domain(100%),Paired-box_protein_2_C_terminal(21%)|Ligand-binding_domain_of_nuclear_hormone_receptor(100%),PPAR_gamma_N-terminal_region(100%),Zinc_finger__C4_type_(two_domains)(100%) | . | . | ENSG00000125618.18 | ENSG00000132170.23 | ENST00000681162.1 | ENST00000287820.10 | upstream | upstream | duplicates(1) | CTTCCTCTTTATCTAGCTCCGCCTTTTTGGATCTGCAGCAAGTCGGCTCCGGGGTCCCGCCCTTCAATGCCTTTCCCCATGCTGCCTCCGTGTACGGGCAGTTCACGGGCCAGGCCCTCCTCTCAG|AAATGACCATGGTTGACACAGAGATGCCATTCTGGCCCACCAACTTTGGGATCAGCTCCGTGGATCTCTCCGTAATGGAAGACCACTCCCACTCCTTTGATATCAAGCCCTTCACTACTGTTGACTTCTCCAG | SSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQALLS|eMTMVDTEMPFWPTNFGISSVDLSVMEDHSHSFDIKPFTTVDFS | SYNTHESIZER:1:REGRESSION:2:1101:84478580:84488580,SYNTHESIZER:1:REGRESSION:1:1101:16887500:16897500,SYNTHESIZER:1:REGRESSION:1:1101:37680630:37690630,SYNTHESIZER:1:REGRESSION:2:1101:81157010:81167010,SYNTHESIZER:1:REGRESSION:3:1101:14604220:14614220,SYNTHESIZER:1:REGRESSION:3:1101:81025040:81035040,SYNTHESIZER:1:REGRESSION:4:1101:32146510:32156510,SYNTHESIZER:1:REGRESSION:4:1101:32584600:32594600,SYNTHESIZER:1:REGRESSION:4:1101:84808600:84818600 | chr2:113235394-chr3:12379704 | 0.125 | 0.2692307692307692 | 0.1971153846153846 | 8 | False | PASS |
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