.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1200_S21)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/ca16612eae5afbdbccbbd731daa4d9/.command.log
Size: 975 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1200_S21)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/46cbdee150591e72c739a908598d6c/rna_s1200_S21
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/ca16612eae5afbdbccbbd731daa4d9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/74fc3065be0619bf841d0bae07ee60/rna_s1200_S21.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/ca16612eae5afbdbccbbd731daa4d9/.command.run
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: rna_s1200_S21/abundance.h5
Successfully converted rna_s1200_S21/abundance.h5 to rna_s1200_S21_kallisto_mqc.tsv
  Sample: rna_s1200_S21
  Mean Fragment Length: 181.2 bp
  Median Fragment Length: 167.0 bp
  pct_mito_est_counts: 0.002%
  pct_ribo_est_counts: 4.584%
  pct_hk_est_counts: 2.972%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.003%
  pct_ribo_tpm: 10.895%
  pct_hk_tpm: 3.446%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.696%