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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/340d2210baac3e8435d748e2694f2f/rna_s1221_S42_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/bfe1f1c169eb712df6992680ff6c0d/rna_s1221_S42_contamination_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/480b8c6d25cc1d249623d8a90e5963/rna_s1221_S42.bam_stat.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/3c2543982bb0a16fe9cf2b79d13556/rna_s1200_S21.fastp.json
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/a6a492275e9f53fadb8c456e09e719/rna_s1221_S42.lc_extrap.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/90fd31c65ea70bcdddddb970f67cc0/rna_s1221_S42.pos.DupRate.xls
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/739162e0bc641ce1cd30aebebbed7b/rna_s1221_S42.junction_annotation.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/4768109aaef527587b93d957824cd0/rna_s1221_S42.infer_experiment.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/d3537f818df4a96aed41e5ef145339/rna_s1200_S21.attempt1.command.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/1c7e59ca03e473a016f7df43373edc/rna_s1200_S21.md.bam.metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/73/45a512d3f279bc28e79f1499be9df3/workflow_summary_mqc.yaml
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/941c0bb10e8acdb24c63d00a487380/rna_s1221_S42.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/f3e2c3f204ed76ff3154648d98acea/rna_s1221_S42_trimmed_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/a6a492275e9f53fadb8c456e09e719/rna_s1221_S42.attempt1.command.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/d2cf59c2899fca411ac2d11ba7c941/rna_s1221_S42_kallisto_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/379f7a8863c995bdbc21aab84ab8dc/rna_s1200_S21_trimmed_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/2c0e6cd1c33677e634d2ade30a1c70/rna_s1221_S42_preseq_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/6039718063ecc790b1b15a1b4ba100/rna_s1200_S21_contamination_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/c3ac25ba18d07e4026850be2e1a9f4/rna_s1200_S21.junctionSaturation_plot.r
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/968cc0373a77cd64e5c5233acc4770/rna_s1200_S21.Log.final.out
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/029c8d226d575a7ba30223452ee1a5/rna_s1221_S42.read_distribution.txt
  Downloading: s3://natera-rnd-pltf-dev-s3-gitlab-results/rnafusion/build2803241/baseline-run/63723170/pipeline_info/nf_core_pipeline_software_mqc_versions.yml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/e1972659198e3d9319d9829ce21f63/rna_s1200_S21.read_distribution.txt
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/a08ed67a060a2403bac91d9c01759e/rna_s1221_S42_seqtool_mqc.tsv
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/5d4a6837ad3b388aa4aa7b43516aa9/rna_s1200_S21_preseq_mqc.tsv
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/a360563d3d724f7fdcf7af4dab7172/rna_s1221_S42_rseqc_extra_mqc.tsv
==> STAGING COMPLETE (56 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.EhwhCQBpXK
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 91/91  
|    custom_content | rna_contamination: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|    custom_content | kallisto_qc_metrics: Found 2 General Statistics columns
|    custom_content | preseq_metrics: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | seqtools_metrics: Found 2 General Statistics columns
|    custom_content | rseqc_extra_metrics: Found 2 General Statistics columns
|          kallisto | Found 2 reports
|            picard | Found 2 MarkDuplicates reports
|            preseq | Found 2 reports
|             rseqc | Found 2 read_distribution reports
|             rseqc | Found 2 inner_distance reports
|             rseqc | Found 2 read_duplication reports
|             rseqc | Found 2 junction_annotation reports
|             rseqc | Found 2 junction_saturation reports
|             rseqc | Found 2 infer_experiment reports
|             rseqc | Found 2 bam_stat reports
|              star | Found 2 reports and 2 gene count files
|             fastp | Found 2 reports
|            fastqc | Found 8 reports
|            fastqc | Found 4 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete