{
  "source_file": "multiqc_general_stats.txt",
  "total_samples": 10,
  "metrics": [
    "Sample",
    "fastp_mqc-generalstats-fastp-after_filtering_q30_rate",
    "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct",
    "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped",
    "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean",
    "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median",
    "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30",
    "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature",
    "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc",
    "STAR_mqc-generalstats-star-uniquely_mapped_percent",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias",
    "fastp_mqc-generalstats-fastp-pct_adapter",
    "fastp_mqc-generalstats-fastp-pct_duplication",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm",
    "fastp_mqc-generalstats-fastp-pct_surviving",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads",
    "STAR_mqc-generalstats-star-uniquely_mapped",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target",
    "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes",
    "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads",
    "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads",
    "fastp_mqc-generalstats-fastp-after_filtering_gc_content",
    "fastp_mqc-generalstats-fastp-after_filtering_q30_bases",
    "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length",
    "Kallisto_mqc-generalstats-kallisto-fragment_length",
    "Kallisto_mqc-generalstats-kallisto-percent_aligned",
    "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads",
    "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent"
  ],
  "samples": [
    {
      "Sample": "rna_s1200_S21",
      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.984633,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": "N/A",
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9607,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.003853,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 181.2,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 167,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Skipped",
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.985625,
      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.184331,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.002,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.003,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.696,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 19200129,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.95,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
      "fastp_mqc-generalstats-fastp-pct_adapter": 32.738935000000005,
      "fastp_mqc-generalstats-fastp-pct_duplication": 13.3191,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 2.972,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 3.446,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 4.584,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 10.895,
      "fastp_mqc-generalstats-fastp-pct_surviving": 99.37706,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 19875412,
      "STAR_mqc-generalstats-star-uniquely_mapped": 9534804,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.293198,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.049933,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.945347,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 34.559207,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 5,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.084685,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.027879,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.972121,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 224622,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 7832369,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 810206,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 15339088,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 53979070,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.183621,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 16225876,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
      "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.535761,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 2750334612,
      "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 19875412,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
      "Kallisto_mqc-generalstats-kallisto-fragment_length": null,
      "Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
      "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.33600244662823
    },
    {
      "Sample": "rna_s1200_S21_1",
      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
      "fastp_mqc-generalstats-fastp-pct_adapter": null,
      "fastp_mqc-generalstats-fastp-pct_duplication": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
      "fastp_mqc-generalstats-fastp-pct_surviving": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
      "STAR_mqc-generalstats-star-uniquely_mapped": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 150,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 55.1196738153078,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 10000000,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
      "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
      "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 150,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
      "Kallisto_mqc-generalstats-kallisto-fragment_length": 181.2,
      "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.82623877180508,
      "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 9721684,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
    },
    {
      "Sample": "rna_s1200_S21_2",
      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
      "fastp_mqc-generalstats-fastp-pct_adapter": null,
      "fastp_mqc-generalstats-fastp-pct_duplication": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
      "fastp_mqc-generalstats-fastp-pct_surviving": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
      "STAR_mqc-generalstats-star-uniquely_mapped": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 150,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 51.30713513081027,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 10000000,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
      "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
      "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 150,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
      "Kallisto_mqc-generalstats-kallisto-fragment_length": null,
      "Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
      "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
    },
    {
      "Sample": "rna_s1200_S21_trimmed_1",
      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
      "fastp_mqc-generalstats-fastp-pct_adapter": null,
      "fastp_mqc-generalstats-fastp-pct_duplication": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
      "fastp_mqc-generalstats-fastp-pct_surviving": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
      "STAR_mqc-generalstats-star-uniquely_mapped": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 140.52089164239715,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 140.52089164239715,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 55.20979973333161,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 55.20979973333161,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 9937706,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 9937706,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
      "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
      "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 150,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 150,
      "Kallisto_mqc-generalstats-kallisto-fragment_length": null,
      "Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
      "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
    },
    {
      "Sample": "rna_s1200_S21_trimmed_2",
      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
      "fastp_mqc-generalstats-fastp-pct_adapter": null,
      "fastp_mqc-generalstats-fastp-pct_duplication": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
      "fastp_mqc-generalstats-fastp-pct_surviving": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
      "STAR_mqc-generalstats-star-uniquely_mapped": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 140.53251514987463,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 140.53251514987463,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 51.43328044275465,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 51.43328044275465,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 9937706,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 9937706,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
      "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
      "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 150,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 150,
      "Kallisto_mqc-generalstats-kallisto-fragment_length": null,
      "Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
      "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
    },
    {
      "Sample": "rna_s1221_S42",
      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.983893,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": "N/A",
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9584,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.004391,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 175.5,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 161,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Skipped",
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.98502,
      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.199581,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.005,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.009,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.774,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 18864613,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.32,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0,
      "fastp_mqc-generalstats-fastp-pct_adapter": 36.832589999999996,
      "fastp_mqc-generalstats-fastp-pct_duplication": 13.947899999999999,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 2.826,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 3.189,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 4.713,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 11.321,
      "fastp_mqc-generalstats-fastp-pct_surviving": 99.32006,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 19864012,
      "STAR_mqc-generalstats-star-uniquely_mapped": 9368114,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.28172,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.058443,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.936077,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 32.870035,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 5,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.079333,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.037992,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.962008,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 299983,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 7595968,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 930229,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 14899481,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 53000545,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.198705,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 15916933,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
      "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.533166,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 2705779238,
      "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 19864012,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
      "Kallisto_mqc-generalstats-kallisto-fragment_length": null,
      "Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
      "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 80.25001383886074
    },
    {
      "Sample": "rna_s1221_S42_1",
      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
      "fastp_mqc-generalstats-fastp-pct_adapter": null,
      "fastp_mqc-generalstats-fastp-pct_duplication": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
      "fastp_mqc-generalstats-fastp-pct_surviving": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
      "STAR_mqc-generalstats-star-uniquely_mapped": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 150,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 57.988386175167875,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 10000000,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
      "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
      "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 150,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
      "Kallisto_mqc-generalstats-kallisto-fragment_length": 175.5,
      "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.36796433671103,
      "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 9571272,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
    },
    {
      "Sample": "rna_s1221_S42_2",
      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
      "fastp_mqc-generalstats-fastp-pct_adapter": null,
      "fastp_mqc-generalstats-fastp-pct_duplication": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
      "fastp_mqc-generalstats-fastp-pct_surviving": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
      "STAR_mqc-generalstats-star-uniquely_mapped": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 150,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 52.2829601665107,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 10000000,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
      "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
      "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 150,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
      "Kallisto_mqc-generalstats-kallisto-fragment_length": null,
      "Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
      "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
    },
    {
      "Sample": "rna_s1221_S42_trimmed_1",
      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
      "fastp_mqc-generalstats-fastp-pct_adapter": null,
      "fastp_mqc-generalstats-fastp-pct_duplication": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
      "fastp_mqc-generalstats-fastp-pct_surviving": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
      "STAR_mqc-generalstats-star-uniquely_mapped": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 138.4228959386452,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 138.4228959386452,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 58.06626133669685,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 58.06626133669685,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 9932006,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 9932006,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
      "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
      "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 150,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 150,
      "Kallisto_mqc-generalstats-kallisto-fragment_length": null,
      "Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
      "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
    },
    {
      "Sample": "rna_s1221_S42_trimmed_2",
      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null,
      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null,
      "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null,
      "fastp_mqc-generalstats-fastp-pct_adapter": null,
      "fastp_mqc-generalstats-fastp-pct_duplication": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
      "fastp_mqc-generalstats-fastp-pct_surviving": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null,
      "STAR_mqc-generalstats-star-uniquely_mapped": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 138.44541374622608,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 138.44541374622608,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 52.384744289571934,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 52.384744289571934,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 9932006,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 9932006,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null,
      "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
      "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
      "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 150,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 150,
      "Kallisto_mqc-generalstats-kallisto-fragment_length": null,
      "Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
      "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null
    }
  ]
}