#!/bin/bash -euo pipefail
cat rna_s1200_S21_S1_L001_R1_001.fastq.gz rna_s1200_S21_S1_L002_R1_001.fastq.gz rna_s1200_S21_S1_L003_R1_001.fastq.gz rna_s1200_S21_S1_L004_R1_001.fastq.gz > rna_s1200_S21_R1.fastq.gz
cat rna_s1200_S21_S1_L001_R2_001.fastq.gz rna_s1200_S21_S1_L002_R2_001.fastq.gz rna_s1200_S21_S1_L003_R2_001.fastq.gz rna_s1200_S21_S1_L004_R2_001.fastq.gz > rna_s1200_S21_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS