Analyzing demux output from: merged Loading Demultiplex_Stats.csv from: merged/Reports/Demultiplex_Stats.csv Loaded 12 rows from Demultiplex_Stats.csv ================================================================================ 1. % UNDETERMINED PER LANE ================================================================================ Undetermined Summary per Lane: %_Undetermined Undetermined_Reads Total_Reads Lane 1 0.0 0 5000000 2 0.0 0 5000000 3 0.0 0 5000000 4 0.0 0 5000000 ================================================================================ 2. SAMPLES WITH <1000000 READS (NON-NTC) ================================================================================ No samples found with <1000000 reads ================================================================================ 3. NTC SAMPLES WITH >2000000 READS ================================================================================ No NTC samples found in the data ================================================================================ 4. TOP UNKNOWN BARCODES (>0.05% OF LANE READS) ================================================================================ Loading Top_Unknown_Barcodes.csv from: merged/Reports/Top_Unknown_Barcodes.csv No barcodes found with >0.05% of lane reads in any lane ================================================================================ 5. BARCODES WITH HIGH MISMATCH RATES ================================================================================ No barcodes found with >20.0% mismatch rate ================================================================================ FINAL STATUS CHECK ================================================================================ Overall % Undetermined: 0.00% Status: 🟢 PASS Thresholds: <5.0% = PASS, 5.0-10.0% = WARNING, >10.0% = FAIL NTC gate: >2,000,000 reads = FAIL === Creating reports in . === QC summary saved to: ./qc_report.csv Detailed QC report saved to: ./qc_report_detailed.txt Pass file created: ./samplesheet_status.pass ================================================================================ QC SUMMARY ================================================================================ Metric Value Total_Reads 20000000 Total_Samples_Analyzed 3 Number_of_Lanes 4 Global_Percent_Undetermined 0.00% Lanes_Exceeding_Fail_Threshold None Samples_with_Low_Reads 0 NTC_Samples_with_High_Reads 0 Significant_Unknown_Barcodes 0 High_Mismatch_Barcodes 0 Final_Status PASS ================================================================================ QC Analysis completed successfully! Flowcell Status: PASS Reports generated: - ./qc_report.csv - ./qc_report_detailed.txt - ./samplesheet_status.pass ================================================================================