#gene1	gene2	strand1(gene/fusion)	strand2(gene/fusion)	breakpoint1	breakpoint2	site1	site2	type	split_reads1	split_reads2	discordant_mates	coverage1	coverage2	confidence	reading_frame	tags	retained_protein_domains	closest_genomic_breakpoint1	closest_genomic_breakpoint2	gene_id1	gene_id2	transcript_id1	transcript_id2	direction1	direction2	filters	fusion_transcript	peptide_sequence	read_identifiers	breakpoint_ID	vaf1	vaf2	vaf_avg	total_reads	blacklisted	aih_curated_reason	FILTER	filter_reason
FGFR3	TACC3	+/+	+/+	chr4:1806934	chr4:1739702	CDS/splice-site	CDS/splice-site	duplication	13	16	0	70	140	high	in-frame	.	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(100%)|Transforming_acidic_coiled-coil-containing_protein_(TACC)__C-terminal(95%)	.	.	ENSG00000068078.20	ENSG00000013810.20	ENST00000412135.7	ENST00000651472.1	downstream	upstream	duplicates(4)	TGCACACACGACCT___GTACATGATCATGCGGGAGTGCTGGCATGCCGCGCCCTCCCAGAGGCCCACCTTCAAGCAGCTGGTGGAGGACCTGGACCGTGTCCTTACCGTGACGTCCACCGAC|GTAAAGGCGACACAGGAGGAGAACCGGGAGCTGAGGAGCAGGTGTGAGGAGCTCCACGGGAAGAACCTGGAACTGGG___GAAGATCATGGACAGGTTCGAAGAGGTTGTGTACCAGGCCATGG___AGGAAGTTCAGAAGCAGAAGGAACTTTCCAAAGCTGAAATCCAGAAAGTTCTAAAAGAAAAAG	CTHDLYMIMRECWHAAPSQRPTFKQLVEDLDRVLTVTSTD|VKATQEENRELRSRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQKVLKEK	SYNTHESIZER:1:REGRESSION:1:1101:153535120:153545120,SYNTHESIZER:1:REGRESSION:1:1101:160550110:160560110,SYNTHESIZER:1:REGRESSION:1:1101:164815460:164825460,SYNTHESIZER:1:REGRESSION:1:1101:178999920:179009920,SYNTHESIZER:1:REGRESSION:1:1101:187626400:187636400,SYNTHESIZER:1:REGRESSION:2:1101:112919410:112929410,SYNTHESIZER:1:REGRESSION:2:1101:150072740:150082740,SYNTHESIZER:1:REGRESSION:2:1101:163095770:163105770,SYNTHESIZER:1:REGRESSION:2:1101:188123480:188133480,SYNTHESIZER:1:REGRESSION:2:1101:199687200:199697200,SYNTHESIZER:1:REGRESSION:3:1101:113487110:113497110,SYNTHESIZER:1:REGRESSION:3:1101:151699350:151709350,SYNTHESIZER:1:REGRESSION:3:1101:158825840:158835840,SYNTHESIZER:1:REGRESSION:3:1101:163982960:163992960,SYNTHESIZER:1:REGRESSION:3:1101:194263860:194273860,SYNTHESIZER:1:REGRESSION:4:1101:129123590:129133590,SYNTHESIZER:1:REGRESSION:4:1101:142537460:142547460,SYNTHESIZER:1:REGRESSION:4:1101:169368800:169378800,SYNTHESIZER:1:REGRESSION:4:1101:169577660:169587660,SYNTHESIZER:1:REGRESSION:4:1101:189380640:189390640,SYNTHESIZER:1:REGRESSION:1:1101:110254350:110264350,SYNTHESIZER:1:REGRESSION:1:1101:144045710:144055710,SYNTHESIZER:1:REGRESSION:1:1101:165731810:165741810,SYNTHESIZER:1:REGRESSION:1:1101:170063320:170073320,SYNTHESIZER:1:REGRESSION:2:1101:118464700:118474700,SYNTHESIZER:1:REGRESSION:2:1101:124371890:124381890,SYNTHESIZER:1:REGRESSION:2:1101:139793760:139803760,SYNTHESIZER:1:REGRESSION:2:1101:142938110:142948110,SYNTHESIZER:1:REGRESSION:2:1101:145670420:145680420,SYNTHESIZER:1:REGRESSION:3:1101:127173320:127183320,SYNTHESIZER:1:REGRESSION:3:1101:171930860:171940860,SYNTHESIZER:1:REGRESSION:3:1101:197101420:197111420,SYNTHESIZER:1:REGRESSION:4:1101:120300050:120310050	chr4:1806934-chr4:1739702	0.1566265060240964	0.10256410256410256	0.1295953042940995	29	False		PASS	
LMNA	NTRK1	+/+	+/+	chr1:156130773	chr1:156874906	CDS/splice-site	CDS/splice-site	deletion	15	7	0	290	68	high	in-frame	.	Intermediate_filament_protein(39%)|Protein_kinase_domain(100%),Tyrosine_kinase_receptor_A_trans-membrane_domain(95%)	.	.	ENSG00000160789.23	ENSG00000198400.13	ENST00000368301.6	ENST00000392302.7	downstream	upstream	duplicates(3)	GGCTCGGCTGAAGGACCTGGAGGCTCTGCTGAACTCCAAGGAGGCCGCACTGAGCACTGCTCTCAGTGAGAAGCGCACGCTGGAGGGCGAGCTGCATGATCTGCGGGGCCAGGTGGCCAAG|GTCTCGGTGGCTGTGGGCCTGGCCGTCTTTGCCTGCCTCTTCCTTTCTACGCTGCTCCTTGTGCTCAACAAATGTGGACGGAGAAACAA	ARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAK|VSVAVGLAVFACLFLSTLLLVLNKCGRRN	SYNTHESIZER:1:REGRESSION:1:1101:135814020:135824020,SYNTHESIZER:1:REGRESSION:1:1101:154376590:154386590,SYNTHESIZER:1:REGRESSION:1:1101:171944360:171954360,SYNTHESIZER:1:REGRESSION:1:1101:178383360:178393360,SYNTHESIZER:1:REGRESSION:1:1101:183101920:183111920,SYNTHESIZER:1:REGRESSION:1:1101:185976960:185986960,SYNTHESIZER:1:REGRESSION:1:1101:188936360:188946360,SYNTHESIZER:1:REGRESSION:2:1101:114170330:114180330,SYNTHESIZER:1:REGRESSION:2:1101:141994820:142004820,SYNTHESIZER:1:REGRESSION:2:1101:157079590:157089590,SYNTHESIZER:1:REGRESSION:2:1101:162923440:162933440,SYNTHESIZER:1:REGRESSION:2:1101:177787000:177797000,SYNTHESIZER:1:REGRESSION:3:1101:119331150:119341150,SYNTHESIZER:1:REGRESSION:3:1101:131338300:131348300,SYNTHESIZER:1:REGRESSION:3:1101:139444180:139454180,SYNTHESIZER:1:REGRESSION:3:1101:152444590:152454590,SYNTHESIZER:1:REGRESSION:4:1101:142221230:142231230,SYNTHESIZER:1:REGRESSION:1:1101:106142050:106152050,SYNTHESIZER:1:REGRESSION:1:1101:162985760:162995760,SYNTHESIZER:1:REGRESSION:2:1101:140089430:140099430,SYNTHESIZER:1:REGRESSION:2:1101:174359880:174369880,SYNTHESIZER:1:REGRESSION:2:1101:178037280:178047280,SYNTHESIZER:1:REGRESSION:3:1101:180678360:180688360,SYNTHESIZER:1:REGRESSION:4:1101:168290960:168300960,SYNTHESIZER:1:REGRESSION:4:1101:182105480:182115480	chr1:156130773-chr1:156874906	0.04918032786885246	0.09333333333333334	0.07125683060109289	22	False		PASS	
PAX8	PPARG	-/-	+/+	chr2:113235394	chr3:12379704	CDS/splice-site	CDS/splice-site	translocation	10	9	0	27	23	high	in-frame	.	'Paired_box'_domain(100%),Paired-box_protein_2_C_terminal(21%)|Ligand-binding_domain_of_nuclear_hormone_receptor(100%),PPAR_gamma_N-terminal_region(100%),Zinc_finger__C4_type_(two_domains)(100%)	.	.	ENSG00000125618.18	ENSG00000132170.23	ENST00000681162.1	ENST00000287820.10	upstream	upstream	duplicates(4)	CCAGTTCTAGCTCCACCCCTTCCTCTTTATCTAGCTCCGCCTTTTTGGATCTGCAGCAAGTCGGCTCCGGGGTCCCGCCCTTCAATGCCTTTCCCCATGCTGCCTCCGTGTACGGGCAGTTCACGGGCCAGGCCCTCCTCTCAG|AAATGACCATGGTTGACACAGAGATGCCATTCTGGCCCACCAACTTTGGGATCAGCTCCGTGGATCTCTCCGTAATGGAAGACCACTCCCACTCCTTTGATATCAAGCCCTTCACTACTGTTGACTTCTCC	SSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQALLS|eMTMVDTEMPFWPTNFGISSVDLSVMEDHSHSFDIKPFTTVDF	SYNTHESIZER:1:REGRESSION:1:1101:110557600:110567600,SYNTHESIZER:1:REGRESSION:1:1101:123685670:123695670,SYNTHESIZER:1:REGRESSION:1:1101:129145280:129155280,SYNTHESIZER:1:REGRESSION:2:1101:114157790:114167790,SYNTHESIZER:1:REGRESSION:2:1101:186829560:186839560,SYNTHESIZER:1:REGRESSION:3:1101:105790680:105800680,SYNTHESIZER:1:REGRESSION:3:1101:107887330:107897330,SYNTHESIZER:1:REGRESSION:3:1101:125391490:125401490,SYNTHESIZER:1:REGRESSION:4:1101:102689670:102699670,SYNTHESIZER:1:REGRESSION:4:1101:127808830:127818830,SYNTHESIZER:1:REGRESSION:4:1101:129188250:129198250,SYNTHESIZER:1:REGRESSION:4:1101:184155660:184165660,SYNTHESIZER:1:REGRESSION:1:1101:135873490:135883490,SYNTHESIZER:1:REGRESSION:1:1101:142667990:142677990,SYNTHESIZER:1:REGRESSION:1:1101:145413880:145423880,SYNTHESIZER:1:REGRESSION:1:1101:160896630:160906630,SYNTHESIZER:1:REGRESSION:1:1101:175591860:175601860,SYNTHESIZER:1:REGRESSION:3:1101:101222080:101232080,SYNTHESIZER:1:REGRESSION:3:1101:131073750:131083750,SYNTHESIZER:1:REGRESSION:3:1101:170907060:170917060,SYNTHESIZER:1:REGRESSION:3:1101:171041080:171051080,SYNTHESIZER:1:REGRESSION:4:1101:107114360:107124360,SYNTHESIZER:1:REGRESSION:4:1101:154504510:154514510	chr2:113235394-chr3:12379704	0.2702702702702703	0.28125	0.27576013513513514	19	False		PASS	
ETV6	NTRK3	+/+	-/-	chr12:11869969	chr15:87940753	CDS/splice-site	CDS/splice-site	translocation	13	6	0	167	10	high	in-frame	.	Sterile_alpha_motif_(SAM)/Pointed_domain(100%)|Protein_kinase_domain(100%)	.	.	ENSG00000139083.11	ENSG00000140538.16	ENST00000396373.9	ENST00000394480.6	downstream	downstream	duplicates(3)	CCGTGGATTTCAAACAGTCCAGGCTCTCCGAGGACGGGCTGCATAGGGAAGGGAAGCCCATCAACCTCTCTCATCGGGAAGACCTGGCTTACATGAACCACATCATGGTCTCTGTCTCCCCGCCTGAAGAGCACGCCATGCCCATTGGGAGAATAGCAG|ATGTGCAGCACATTAAGAGGAGAGACATCGTGCTGAAGCGAGAACTGGGTGAGGGAGCCTTTGGAAAGGTCTTCCTGGCCGAGTGCTACAACCTCAGCCCGACC	VDFKQSRLSEDGLHREGKPINLSHREDLAYMNHIMVSVSPPEEHAMPIGRIA|dVQHIKRRDIVLKRELGEGAFGKVFLAECYNLSP	SYNTHESIZER:1:REGRESSION:1:1101:108436840:108446840,SYNTHESIZER:1:REGRESSION:1:1101:117665360:117675360,SYNTHESIZER:1:REGRESSION:1:1101:143897140:143907140,SYNTHESIZER:1:REGRESSION:2:1101:109656140:109666140,SYNTHESIZER:1:REGRESSION:2:1101:170018500:170028500,SYNTHESIZER:1:REGRESSION:2:1101:177410840:177420840,SYNTHESIZER:1:REGRESSION:3:1101:112717140:112727140,SYNTHESIZER:1:REGRESSION:3:1101:115047590:115057590,SYNTHESIZER:1:REGRESSION:3:1101:122745210:122755210,SYNTHESIZER:1:REGRESSION:3:1101:142495850:142505850,SYNTHESIZER:1:REGRESSION:3:1101:163563280:163573280,SYNTHESIZER:1:REGRESSION:3:1101:167892680:167902680,SYNTHESIZER:1:REGRESSION:3:1101:176592440:176602440,SYNTHESIZER:1:REGRESSION:3:1101:193542040:193552040,SYNTHESIZER:1:REGRESSION:4:1101:107746990:107756990,SYNTHESIZER:1:REGRESSION:4:1101:180328560:180338560,SYNTHESIZER:1:REGRESSION:2:1101:114379060:114389060,SYNTHESIZER:1:REGRESSION:2:1101:187135080:187145080,SYNTHESIZER:1:REGRESSION:2:1101:194468760:194478760,SYNTHESIZER:1:REGRESSION:4:1101:125293000:125303000,SYNTHESIZER:1:REGRESSION:4:1101:142989740:142999740,SYNTHESIZER:1:REGRESSION:4:1101:199816980:199826980	chr12:11869969-chr15:87940753	0.07222222222222222	0.375	0.2236111111111111	19	False		PASS	
EGFR	SEPTIN14	+/+	-/-	chr7:55200413	chr7:55796092	CDS/splice-site	CDS/splice-site	inversion	12	7	0	24	88	high	in-frame	.	Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(100%)|	.	.	ENSG00000146648.19	ENSG00000154997.9	ENST00000275493.7	ENST00000388975.4	downstream	downstream	duplicates(3)	AGATCTCCTCCATCCTGGAGAAAGGAGAACGCCTCCCTCAGCCACCCATATGTACCATCGATGTCTACATGATCATGGTCAAGT___GCTGGATGATAGACGCAGATAGTCGCCCAAAGTTCCGTGAGTTGATCATCGAATTCTCCAAAATGGCCCGAGACCCCCAGCGCTACCTTGTCATTCAG|CTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGAAAGCTGCCTCCGAAGCAC	ISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQ|LQDKFEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEA	SYNTHESIZER:1:REGRESSION:1:1101:123837080:123847080,SYNTHESIZER:1:REGRESSION:1:1101:154211320:154221320,SYNTHESIZER:1:REGRESSION:1:1101:175887920:175897920,SYNTHESIZER:1:REGRESSION:1:1101:184009660:184019660,SYNTHESIZER:1:REGRESSION:1:1101:190825340:190835340,SYNTHESIZER:1:REGRESSION:3:1101:104460550:104470550,SYNTHESIZER:1:REGRESSION:3:1101:117301920:117311920,SYNTHESIZER:1:REGRESSION:3:1101:121939230:121949230,SYNTHESIZER:1:REGRESSION:3:1101:125998540:126008540,SYNTHESIZER:1:REGRESSION:3:1101:169791040:169801040,SYNTHESIZER:1:REGRESSION:4:1101:117795060:117805060,SYNTHESIZER:1:REGRESSION:4:1101:142980110:142990110,SYNTHESIZER:1:REGRESSION:4:1101:175531440:175541440,SYNTHESIZER:1:REGRESSION:4:1101:175621460:175631460,SYNTHESIZER:1:REGRESSION:1:1101:184188320:184198320,SYNTHESIZER:1:REGRESSION:2:1101:104544800:104554800,SYNTHESIZER:1:REGRESSION:2:1101:180866040:180876040,SYNTHESIZER:1:REGRESSION:2:1101:192037840:192047840,SYNTHESIZER:1:REGRESSION:3:1101:101331620:101341620,SYNTHESIZER:1:REGRESSION:3:1101:175966020:175976020,SYNTHESIZER:1:REGRESSION:3:1101:191697200:191707200,SYNTHESIZER:1:REGRESSION:4:1101:105963210:105973210	chr7:55200413-chr7:55796092	0.3333333333333333	0.07368421052631578	0.20350877192982456	19	False		PASS	
FGFR3	BAIAP2L1	+/+	-/-	chr4:1806934	chr7:98362432	CDS/splice-site	CDS/splice-site	translocation	16	1	0	70	9	high	in-frame	.	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(100%)|IRSp53/MIM_homology_domain(99%),Variant_SH3_domain(100%)	.	.	ENSG00000068078.20	ENSG00000006453.14	ENST00000412135.7	ENST00000005260.9	downstream	downstream	duplicates(2)	ACTGCACACACGACCT___GTACATGATCATGCGGGAGTGCTGGCATGCCGCGCCCTCCCAGAGGCCCACCTTCAAGCAGCTGGTGGAGGACCTGGACCGTGTCCTTACCGTGACGTCCACCGAC|AATGTTATGGAACAGTTCAATCCTGGGCTGCGAAATTTAATAAACCTGGGGAAAAATTATGAGAAAGCTGTA	CTHDLYMIMRECWHAAPSQRPTFKQLVEDLDRVLTVTSTD|NVMEQFNPGLRNLINLGKNYEKA	SYNTHESIZER:1:REGRESSION:1:1101:102533240:102543240,SYNTHESIZER:1:REGRESSION:1:1101:133736800:133746800,SYNTHESIZER:1:REGRESSION:1:1101:162189670:162199670,SYNTHESIZER:1:REGRESSION:1:1101:165144720:165154720,SYNTHESIZER:1:REGRESSION:1:1101:165773160:165783160,SYNTHESIZER:1:REGRESSION:2:1101:157573110:157583110,SYNTHESIZER:1:REGRESSION:3:1101:104672530:104682530,SYNTHESIZER:1:REGRESSION:3:1101:114207430:114217430,SYNTHESIZER:1:REGRESSION:3:1101:125428790:125438790,SYNTHESIZER:1:REGRESSION:3:1101:154139900:154149900,SYNTHESIZER:1:REGRESSION:3:1101:156600120:156610120,SYNTHESIZER:1:REGRESSION:3:1101:166255480:166265480,SYNTHESIZER:1:REGRESSION:3:1101:177723880:177733880,SYNTHESIZER:1:REGRESSION:4:1101:121204890:121214890,SYNTHESIZER:1:REGRESSION:4:1101:167667880:167677880,SYNTHESIZER:1:REGRESSION:4:1101:176895300:176905300,SYNTHESIZER:1:REGRESSION:4:1101:181456980:181466980,SYNTHESIZER:1:REGRESSION:1:1101:159620770:159630770,SYNTHESIZER:1:REGRESSION:2:1101:153401020:153411020	chr4:1806934-chr7:98362432	0.18604651162790697	0.1	0.14302325581395348	17	False		PASS	
AC015911.9	SLFN12L	-/-	-/-	chr17:35522279	chr17:35480195	exon	CDS/splice-site	deletion/read-through	3	9	0	21	56	high	.	.	|Putative_DNA-binding_domain(100%)	.	.	ENSG00000286030.2	ENSG00000205045.11	ENST00000650652.2	ENST00000628453.3	upstream	downstream	duplicates(1)	AGGAAAGACCATCATGGCCATGAAGATCATGGAGAAGATCAGGAATGTGTTTCACTGTGAGGCACACAGAATTCTCTACATTTGTGAAAGTCAGTTTCTGAGGAATTTCATCAG|AAAAGAATTTCTGCGTGGAAATGGCTTAGCTGCTGGGAAAATGAACATCAGTATTGATTTAGACACAAACTATGCTGAGCTGGTTCTAAATGTGGGAAGAGTCACTCTTGGAGAGAACAATAGAAAAAAAATGAAGGATTGTCAACTGAGAAAACAGCAGAATGAAAATGTCTCACGAGCTGTGTGTGCTCTGCTGAATTCTGGAGGGGGAGTGATCAAGGCTGAAGTTGAGAATAAAGGCTATAGTTATAAAAAAGATGGAATAGGGCT	.	SYNTHESIZER:1:REGRESSION:1:1101:149039200:149049200,SYNTHESIZER:1:REGRESSION:1:1101:181518160:181528160,SYNTHESIZER:1:REGRESSION:1:1101:187618760:187628760,SYNTHESIZER:1:REGRESSION:2:1101:112151520:112161520,SYNTHESIZER:1:REGRESSION:2:1101:180683420:180693420,SYNTHESIZER:1:REGRESSION:3:1101:177617500:177627500,SYNTHESIZER:1:REGRESSION:3:1101:183606380:183616380,SYNTHESIZER:1:REGRESSION:4:1101:101537850:101547850,SYNTHESIZER:1:REGRESSION:4:1101:137899530:137909530,SYNTHESIZER:1:REGRESSION:2:1101:101684050:101694050,SYNTHESIZER:1:REGRESSION:3:1101:144224670:144234670,SYNTHESIZER:1:REGRESSION:3:1101:147437680:147447680,SYNTHESIZER:1:REGRESSION:4:1101:169013400:169023400	chr17:35522279-chr17:35480195	0.125	0.13846153846153847	0.13173076923076923	12	False		PASS	
NCOA4	RET	-/-	+/+	chr10:46012883	chr10:43116584	CDS/splice-site	CDS/splice-site	inversion	5	5	0	188	55	high	in-frame	.	Nuclear_coactivator(62%)|Protein_kinase_domain(100%)	.	.	ENSG00000266412.6	ENSG00000165731.20	ENST00000581486.6	ENST00000355710.8	upstream	upstream	duplicates(1),mismatches(1)	TGATGGCTCATGCTAGTTCAGCAAATATTGGGCCCTTCCTGGAGAAGAGAGGCTGTATCTCCATGCCAGAGCAG___AAGTCAGCATCCGGTATTGTAGCTGTCCCTTTCAGCGAATGGCTCCTTGGAAGCAAACCTGCCAGTGGTTATCAAGCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTACCCAAAAGCAGACCTTGGAGAACAGTCAG|GAGGATCCAAAGTGGGAATTCCCTCGGAAGAACTTGGTTCTTGGAAAAACTCTAGGAGAAGGCGAATTTGGAAAAGTGGTCAAGGCAACGGCCTTCCATCTGAAAGGCAGAGCAGGG	MAHASSANIGPFLEKRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDPQDWLTQKQTLENSQ|EDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRA	SYNTHESIZER:1:REGRESSION:2:1101:113709440:113719440,SYNTHESIZER:1:REGRESSION:2:1101:139941720:139951720,SYNTHESIZER:1:REGRESSION:3:1101:115141820:115151820,SYNTHESIZER:1:REGRESSION:3:1101:129575110:129585110,SYNTHESIZER:1:REGRESSION:4:1101:108469140:108479140,SYNTHESIZER:1:REGRESSION:4:1101:152609140:152619140,SYNTHESIZER:1:REGRESSION:1:1101:123748870:123758870,SYNTHESIZER:1:REGRESSION:1:1101:146132110:146142110,SYNTHESIZER:1:REGRESSION:2:1101:132675980:132685980,SYNTHESIZER:1:REGRESSION:2:1101:184004760:184014760,SYNTHESIZER:1:REGRESSION:3:1101:167336160:167346160,SYNTHESIZER:1:REGRESSION:4:1101:142941020:142951020	chr10:46012883-chr10:43116584	0.025906735751295335	0.08333333333333333	0.05462003454231433	10	False		PASS	
SLC45A3	BRAF	-/-	-/-	chr1:205680394	chr7:140794467	5'UTR/splice-site	CDS/splice-site	translocation	2	6	0	2	184	high	.	.	|Protein_kinase_domain(100%)	.	.	ENSG00000158715.6	ENSG00000157764.14	ENST00000367145.4	ENST00000644969.2	upstream	downstream	.	AAAAGCCGCCGGCTGGCGCGCGTGGGGGGCAAGGAAGGGGGGGCGGAACCAGCCTGCACGCGCTGGCTCCGGGTGACAGCCGCGCGCCTCGGCCAG|GCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGATGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCAATGTGCA	.	SYNTHESIZER:1:REGRESSION:2:1101:113217710:113227710,SYNTHESIZER:1:REGRESSION:4:1101:194269680:194279680,SYNTHESIZER:1:REGRESSION:1:1101:102019990:102029990,SYNTHESIZER:1:REGRESSION:1:1101:114480240:114490240,SYNTHESIZER:1:REGRESSION:1:1101:151846950:151856950,SYNTHESIZER:1:REGRESSION:1:1101:180341680:180351680,SYNTHESIZER:1:REGRESSION:2:1101:177309360:177319360,SYNTHESIZER:1:REGRESSION:2:1101:183363880:183373880	chr1:205680394-chr7:140794467	0.5	0.031578947368421054	0.2657894736842105	8	False		PASS	
EML4	ALK	+/+	-/-	chr2:42295516	chr2:29223528	CDS/splice-site	CDS/splice-site	inversion	2	4	0	102	18	high	in-frame	.	HELP_motif(100%),WD_domain__G-beta_repeat(25%)|Protein_kinase_domain(100%)	.	.	ENSG00000143924.19	ENSG00000171094.18	ENST00000318522.10	ENST00000389048.8	downstream	downstream	.	TGAAAAGCCAAAATTTGTGCAGTGTTTAGCATTCTTGGGGAATGGAGATGTTCTTACTGGAGACTCAGGTGGAGTCATGCTTATATGGAGCAAAACTACTGTAGAGCCCACACCTGGGAAAGGACCTAAAG|TGTACCGCCGGAAGCACCAGGAGCTGCAAGCCATGCAGATGGAGCTGCAGAGCCCTGAGTACAAGCTGAGCAAGCTCCGCACCTCGACCATCATGACCGACTACAACCCCAACTACTGaTTTGCTGGCAAGACCTCCTCCATCAGTGACCTGAAGGAGGTGCCGCGGAAAAACATCACCC	EKPKFVQCLAFLGNGDVLTGDSGGVMLIWSKTTVEPTPGKGPK|vYRRKHQELQAMQMELQSPEYKLSKLRTSTIMTDYNPNY*	SYNTHESIZER:1:REGRESSION:1:1101:135792610:135802610,SYNTHESIZER:1:REGRESSION:2:1101:177669960:177679960,SYNTHESIZER:1:REGRESSION:3:1101:151282770:151292770,SYNTHESIZER:1:REGRESSION:4:1101:135316850:135326850,SYNTHESIZER:1:REGRESSION:1:1101:128262090:128272090,SYNTHESIZER:1:REGRESSION:4:1101:186659800:186669800	chr2:42295516-chr2:29223528	0.019230769230769232	0.18181818181818182	0.10052447552447552	6	False		FAIL	total_reads_below_min(6.0<8.0)
TFG	NTRK1	+/+	+/+	chr3:100732672	chr1:156874571	CDS/splice-site	CDS/splice-site	translocation	4	2	0	284	19	high	in-frame	.	PB1_domain(100%)|Protein_kinase_domain(100%),Tyrosine_kinase_receptor_A_trans-membrane_domain(100%)	.	.	ENSG00000114354.15	ENSG00000198400.13	ENST00000675047.1	ENST00000392302.7	downstream	upstream	.	CAAGTCAGGTGAAATATCTCCGTCGAGAACTGATAGAACTTCGAAATAAAGTGAATCGTTTATTGGATAGCTTGGAACCACCTGGAGAACCAGGACCTTCCACCAATATTCCTGAAAATG___ATACTGTGGATGGTAGGGAAGAAAAGTCTGCTTCTGATTCTTCTGGAAAACAGTCTACTCAGGTTATGGCAGCAAGTATGTCTGCTTTTGATCCTTTAAAAAACCAAGATGAAATCAATAAAAATGTTATGTCAGCGTTTGGCTTAACAGATGATCAGGTTTCAG|ACACTAACAGCACATCTGGAGACCCGGTGGAGAAGAAGGACGAAACACCTTTTGGG___GTCTCGGTGGCTGTGGGCCTGGCCGTCTTTGCCTGCCTCTTCCTTTCTACGCTGCTCCTTGTGCTCAACAAATGTGGAC	SQVKYLRRELIELRNKVNRLLDSLEPPGEPGPSTNIPENDTVDGREEKSASDSSGKQSTQVMAASMSAFDPLKNQDEINKNVMSAFGLTDDQVS|dTNSTSGDPVEKKDETPFGVSVAVGLAVFACLFLSTLLLVLNKCG	SYNTHESIZER:1:REGRESSION:1:1101:165780740:165790740,SYNTHESIZER:1:REGRESSION:1:1101:168587920:168597920,SYNTHESIZER:1:REGRESSION:1:1101:106200170:106210170,SYNTHESIZER:1:REGRESSION:1:1101:125502780:125512780,SYNTHESIZER:1:REGRESSION:2:1101:185402840:185412840,SYNTHESIZER:1:REGRESSION:3:1101:177292020:177302020	chr3:100732672-chr1:156874571	0.013888888888888888	0.09523809523809523	0.054563492063492064	6	False		FAIL	total_reads_below_min(6.0<8.0)
SLC34A2	ROS1	+/+	-/-	chr4:25664330	chr6:117324415	CDS/splice-site	CDS/splice-site	translocation	1	4	1	5	12	high	in-frame	.	Na+/Pi-cotransporter(8%)|Protein_kinase_domain(100%)	.	.	ENSG00000157765.13	ENSG00000047936.11	ENST00000645788.1	ENST00000368507.8	downstream	downstream	.	CTCCACGGCTACACTGATAGATGAGCCCACTGAGGTGGATGACCCCTGGAACCTACCCACTCTTCAGGACTCGGGGATCAAGTGGTCAG___AGAGAGACACCAAAGGGAAGATTCTCTGTTTCTTCCAAGGGATTGGGAGATTGATTTTACTTCTCGGATTTCTCTACTTTTTCGTGTGCTCCCTGGATATTCTTAGTAGCGCCTTCCAGCTGGTTGGAG|ATGATTTTTGGATACCAGAAACAAGTTTCATACTTACTATTATAGTTGGAATATTTCTGGTTGTTACAATCCCACTGACCTTTG___TCTGGCATAGAAGATTAAAGAATCAAAAAAGTGCCAAGGAAGGGGTGACAGTGCTTATAAACGAAGACAAAGAGTTGGCTGAGCTGCGAGGTCTGGCAGCCGGAGTAGGCCTGGCTAATGtCTGCTATGCAATACA___TACTCTTCCAACCCAAGAGGAG	STATLIDEPTEVDDPWNLPTLQDSGIKWSERDTKGKILCFFQGIGRLILLLGFLYFFVCSLDILSSAFQLVG|dDFWIPETSFILTIIVGIFLVVTIPLTFVWHRRLKNQKSAKEGVTVLINEDKELAELRGLAAGVGLANvCYAIHTLPTQE	SYNTHESIZER:1:REGRESSION:4:1101:167453070:167463070,SYNTHESIZER:1:REGRESSION:1:1101:130977870:130987870,SYNTHESIZER:1:REGRESSION:2:1101:141828610:141838610,SYNTHESIZER:1:REGRESSION:3:1101:115479950:115489950,SYNTHESIZER:1:REGRESSION:4:1101:136724050:136734050,SYNTHESIZER:1:REGRESSION:3:1101:105933070:105943070	chr4:25664330-chr6:117324415	0.23076923076923078	0.2727272727272727	0.2517482517482518	6	False		FAIL	total_reads_below_min(6.0<8.0)
CCDC6	RET	-/-	+/+	chr10:59906122	chr10:43116584	CDS/splice-site	CDS/splice-site	inversion	2	4	0	106	55	high	in-frame	.	Uncharacterized_conserved_protein_H4_(DUF2046)(17%)|Protein_kinase_domain(100%)	.	.	ENSG00000108091.11	ENSG00000165731.20	ENST00000263102.7	ENST00000355710.8	upstream	upstream	duplicates(1),mismatches(1)	CACCAACCGCCTGGCCTCGCTGCAGCAAGAGAACAAGGTGCTGAAGATAGAGCTGGAGACCTACAAACTGAAGTGCAAGGCACTGCAGGAGGAGAACCGCGACCTGCGCAAAGCCAGCGTGACCATC|GAGGATCCAAAGTGGGAATTCCCTCGGAAGAACTTGGTTCTTGGAAAAACTCTAGGAGAAGGCGAATTTGGAAAAGTGGTCAAGGCAACGGCCTTCCATCTGAAAGGCAGA	TNRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTI|EDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKG	SYNTHESIZER:1:REGRESSION:2:1101:128771480:128781480,SYNTHESIZER:1:REGRESSION:4:1101:159869100:159879100,SYNTHESIZER:1:REGRESSION:4:1101:163503910:163513910,SYNTHESIZER:1:REGRESSION:4:1101:195935080:195945080,SYNTHESIZER:1:REGRESSION:1:1101:109089400:109099400,SYNTHESIZER:1:REGRESSION:1:1101:175824400:175834400,SYNTHESIZER:1:REGRESSION:3:1101:127963900:127973900,SYNTHESIZER:1:REGRESSION:3:1101:182731840:182741840	chr10:59906122-chr10:43116584	0.018518518518518517	0.06779661016949153	0.04315756434400502	6	False		FAIL	total_reads_below_min(6.0<8.0)
TPM3	NTRK1	-/-	+/+	chr1:154170400	chr1:156874571	CDS/splice-site	CDS/splice-site	inversion	2	3	1	676	19	high	in-frame	.	Tropomyosin(78%)|Protein_kinase_domain(100%),Tyrosine_kinase_receptor_A_trans-membrane_domain(100%)	.	.	ENSG00000143549.21	ENSG00000198400.13	ENST00000271850.11	ENST00000392302.7	upstream	upstream	mismatches(1)	GGATGAGCAGATTAGACTGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCcGAAGAAAAG___TACTCTCAAAAAGAAGATAAATATGAGGAAGAAATCAAGATTCTTACTGATAAACTCAAGGAG___GCAGAGACCCGTGCTGAGTTTGCTGAGAGATCGGTAGCCAAGCTGGAAAAGACAATTGATGACCTGGAAG|ACACTAACAGCACATCTGGAGACCCGGTGGAGAAGAAGGACGAAACACCTTTTGGG___GTCTCGGTGGCTGTGGGCCTGGCCGTCTTTGCCTGCCTCTTCCTTTCTACGCTGCTCCTTGTGCTCAACAAATGTGGACGGAGAAACAAGTTTGGGATCAACCG	DEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLE|dTNSTSGDPVEKKDETPFGVSVAVGLAVFACLFLSTLLLVLNKCGRRNKFGIN	SYNTHESIZER:1:REGRESSION:3:1101:155802760:155812760,SYNTHESIZER:1:REGRESSION:3:1101:175273260:175283260,SYNTHESIZER:1:REGRESSION:1:1101:170819600:170829600,SYNTHESIZER:1:REGRESSION:2:1101:178201220:178211220,SYNTHESIZER:1:REGRESSION:3:1101:100245160:100255160,SYNTHESIZER:1:REGRESSION:4:1101:121317540:121327540,SYNTHESIZER:1:REGRESSION:2:1101:188988440:188998440	chr1:154170400-chr1:156874571	0.0036845983787767134	0.15555555555555556	0.07962007696716614	6	False		FAIL	total_reads_below_min(6.0<8.0)
ACIN1	ACIN1	-/-	-/-	chr14:23079590	chr14:23079595	CDS	CDS	duplication/ITD	21	57	0	81	140	medium	in-frame	.	SAP_domain(100%)|RNSP1-SAP18_binding_(RSB)_motif(100%)	.	.	ENSG00000100813.14	ENSG00000100813.14	ENST00000262710.5	ENST00000262710.5	upstream	downstream	duplicates(18),mismappers(3)	AGGTTCTCGGTCTCATTCACCGCTCAGATCCAAGCAGAGAGATGTAGCCCAGGCACGTACTCATGCCAACCCTCGTGGTAGACCCAAGATGGGCTCCAGATCAACATCAGAGTCCAGATCAAG|g|TCAcGtTCACGTTCACGTTCTCGTTCAGCATCAAGCAACAGCAGAAAA___TCTCTGAGCCCTGGAGTCTCCAGGGACAGCAGCACCAGCTATACTGAAACCAAAGATCCCTCTTCTGGTCAGGAGGTTGCAACTCCACCAGTGCCACAACTGCAGG	GSRSHSPLRSKQRDVAQARTHANPRGRPKMGSRSTSESRSr|SRSRSRSRSASSNSRKSLSPGVSRDSSTSYTETKDPSSGQEVATPPVPQLQ	SYNTHESIZER:1:REGRESSION:1:1101:105445720:105455720,SYNTHESIZER:1:REGRESSION:1:1101:106362530:106372530,SYNTHESIZER:1:REGRESSION:1:1101:125537470:125547470,SYNTHESIZER:1:REGRESSION:1:1101:127220540:127230540,SYNTHESIZER:1:REGRESSION:1:1101:157595730:157605730,SYNTHESIZER:1:REGRESSION:1:1101:185505680:185515680,SYNTHESIZER:1:REGRESSION:1:1101:191942800:191952800,SYNTHESIZER:1:REGRESSION:2:1101:116068070:116078070,SYNTHESIZER:1:REGRESSION:2:1101:119248530:119258530,SYNTHESIZER:1:REGRESSION:2:1101:167850600:167860600,SYNTHESIZER:1:REGRESSION:2:1101:168637080:168647080,SYNTHESIZER:1:REGRESSION:2:1101:173692320:173702320,SYNTHESIZER:1:REGRESSION:2:1101:192669920:192679920,SYNTHESIZER:1:REGRESSION:3:1101:101209400:101219400,SYNTHESIZER:1:REGRESSION:3:1101:157031320:157041320,SYNTHESIZER:1:REGRESSION:3:1101:174353840:174363840,SYNTHESIZER:1:REGRESSION:3:1101:177220200:177230200,SYNTHESIZER:1:REGRESSION:4:1101:108469720:108479720,SYNTHESIZER:1:REGRESSION:4:1101:130684250:130694250,SYNTHESIZER:1:REGRESSION:4:1101:132802670:132812670,SYNTHESIZER:1:REGRESSION:4:1101:139739390:139749390,SYNTHESIZER:1:REGRESSION:4:1101:170044280:170054280,SYNTHESIZER:1:REGRESSION:4:1101:170357280:170367280,SYNTHESIZER:1:REGRESSION:4:1101:173083760:173093760,SYNTHESIZER:1:REGRESSION:4:1101:174281320:174291320,SYNTHESIZER:1:REGRESSION:4:1101:183138520:183148520,SYNTHESIZER:1:REGRESSION:4:1101:195647680:195657680,SYNTHESIZER:1:REGRESSION:4:1101:197404840:197414840,SYNTHESIZER:1:REGRESSION:1:1101:107644630:107654630,SYNTHESIZER:1:REGRESSION:1:1101:108262870:108272870,SYNTHESIZER:1:REGRESSION:1:1101:109230560:109240560,SYNTHESIZER:1:REGRESSION:1:1101:111791600:111801600,SYNTHESIZER:1:REGRESSION:1:1101:119834890:119844890,SYNTHESIZER:1:REGRESSION:1:1101:139120910:139130910,SYNTHESIZER:1:REGRESSION:1:1101:142921410:142931410,SYNTHESIZER:1:REGRESSION:1:1101:145949590:145959590,SYNTHESIZER:1:REGRESSION:1:1101:166708930:166718930,SYNTHESIZER:1:REGRESSION:1:1101:167333540:167343540,SYNTHESIZER:1:REGRESSION:1:1101:171716040:171726040,SYNTHESIZER:1:REGRESSION:1:1101:175397320:175407320,SYNTHESIZER:1:REGRESSION:1:1101:198949820:198959820,SYNTHESIZER:1:REGRESSION:2:1101:114013270:114023270,SYNTHESIZER:1:REGRESSION:2:1101:118917690:118927690,SYNTHESIZER:1:REGRESSION:2:1101:121653740:121663740,SYNTHESIZER:1:REGRESSION:2:1101:122059000:122069000,SYNTHESIZER:1:REGRESSION:2:1101:122293190:122303190,SYNTHESIZER:1:REGRESSION:2:1101:122350510:122360510,SYNTHESIZER:1:REGRESSION:2:1101:147834940:147844940,SYNTHESIZER:1:REGRESSION:2:1101:149349990:149359990,SYNTHESIZER:1:REGRESSION:2:1101:154779030:154789030,SYNTHESIZER:1:REGRESSION:2:1101:157362630:157372630,SYNTHESIZER:1:REGRESSION:2:1101:163551380:163561380,SYNTHESIZER:1:REGRESSION:2:1101:164567960:164577960,SYNTHESIZER:1:REGRESSION:2:1101:164656320:164666320,SYNTHESIZER:1:REGRESSION:2:1101:170068880:170078880,SYNTHESIZER:1:REGRESSION:2:1101:170775720:170785720,SYNTHESIZER:1:REGRESSION:2:1101:172624040:172634040,SYNTHESIZER:1:REGRESSION:2:1101:177801520:177811520,SYNTHESIZER:1:REGRESSION:2:1101:179508860:179518860,SYNTHESIZER:1:REGRESSION:2:1101:181866760:181876760,SYNTHESIZER:1:REGRESSION:2:1101:190550360:190560360,SYNTHESIZER:1:REGRESSION:2:1101:191629320:191639320,SYNTHESIZER:1:REGRESSION:2:1101:195436120:195446120,SYNTHESIZER:1:REGRESSION:3:1101:111656930:111666930,SYNTHESIZER:1:REGRESSION:3:1101:117297590:117307590,SYNTHESIZER:1:REGRESSION:3:1101:129022200:129032200,SYNTHESIZER:1:REGRESSION:3:1101:129056400:129066400,SYNTHESIZER:1:REGRESSION:3:1101:137538680:137548680,SYNTHESIZER:1:REGRESSION:3:1101:146366250:146376250,SYNTHESIZER:1:REGRESSION:3:1101:152968590:152978590,SYNTHESIZER:1:REGRESSION:3:1101:163973920:163983920,SYNTHESIZER:1:REGRESSION:3:1101:176636800:176646800,SYNTHESIZER:1:REGRESSION:3:1101:177154880:177164880,SYNTHESIZER:1:REGRESSION:3:1101:185351960:185361960,SYNTHESIZER:1:REGRESSION:3:1101:187516920:187526920,SYNTHESIZER:1:REGRESSION:3:1101:191137600:191147600,SYNTHESIZER:1:REGRESSION:3:1101:195222900:195232900,SYNTHESIZER:1:REGRESSION:3:1101:195861240:195871240,SYNTHESIZER:1:REGRESSION:4:1101:103869670:103879670,SYNTHESIZER:1:REGRESSION:4:1101:105035070:105045070,SYNTHESIZER:1:REGRESSION:4:1101:106459260:106469260,SYNTHESIZER:1:REGRESSION:4:1101:115272560:115282560,SYNTHESIZER:1:REGRESSION:4:1101:121678600:121688600,SYNTHESIZER:1:REGRESSION:4:1101:124636450:124646450,SYNTHESIZER:1:REGRESSION:4:1101:129444890:129454890,SYNTHESIZER:1:REGRESSION:4:1101:143353870:143363870,SYNTHESIZER:1:REGRESSION:4:1101:145435230:145445230,SYNTHESIZER:1:REGRESSION:4:1101:145830570:145840570,SYNTHESIZER:1:REGRESSION:4:1101:150513300:150523300,SYNTHESIZER:1:REGRESSION:4:1101:154490280:154500280,SYNTHESIZER:1:REGRESSION:4:1101:158881780:158891780,SYNTHESIZER:1:REGRESSION:4:1101:161767560:161777560,SYNTHESIZER:1:REGRESSION:4:1101:170877680:170887680,SYNTHESIZER:1:REGRESSION:4:1101:171195840:171205840,SYNTHESIZER:1:REGRESSION:4:1101:174259640:174269640,SYNTHESIZER:1:REGRESSION:4:1101:175427840:175437840,SYNTHESIZER:1:REGRESSION:4:1101:181343860:181353860,SYNTHESIZER:1:REGRESSION:4:1101:190464500:190474500,SYNTHESIZER:1:REGRESSION:4:1101:196519680:196529680	chr14:23079590-chr14:23079595	0.20588235294117646	0.2893401015228426	0.24761122723200954	78	True	aih_curated_blacklist score(3)	FAIL	confidence_below_min(medium<high);aih_curated_blacklist
KIF5B	RET	-/-	+/+	chr10:32017143	chr10:43114480	CDS/splice-site	CDS/splice-site	inversion	0	15	0	147	44	medium	in-frame	.	Kinesin_motor_domain(100%)|Protein_kinase_domain(100%)	.	.	ENSG00000170759.11	ENSG00000165731.20	ENST00000302418.5	ENST00000355710.8	upstream	upstream	duplicates(4)	CTCGTGATCGCAAACGCTATCAGCAAGAAGTAGATCGCATAAAGGAAGCAGTCAGGTCAAAGAATATGGCCAGAAGAGGGCATTCTGCACAGATTG|ATCCACTGTGCGACGAGCTGTGCCGCACGGTGATCGCAGCCGCTGTCCTCTTCTCCTTCATCGTCTCGGTGCTGCTGTCTGCCTTCTGCATCCACTGCTACCACAAGTTTGCCCACAAGCCACC	RDRKRYQQEVDRIKEAVRSKNMARRGHSAQI|dPLCDELCRTVIAAAVLFSFIVSVLLSAFCIHCYHKFAHKP	SYNTHESIZER:1:REGRESSION:1:1101:103070150:103080150,SYNTHESIZER:1:REGRESSION:1:1101:107479970:107489970,SYNTHESIZER:1:REGRESSION:1:1101:176792320:176802320,SYNTHESIZER:1:REGRESSION:1:1101:185165200:185175200,SYNTHESIZER:1:REGRESSION:2:1101:101734440:101744440,SYNTHESIZER:1:REGRESSION:2:1101:103771410:103781410,SYNTHESIZER:1:REGRESSION:2:1101:125250910:125260910,SYNTHESIZER:1:REGRESSION:2:1101:150086940:150096940,SYNTHESIZER:1:REGRESSION:2:1101:170177900:170187900,SYNTHESIZER:1:REGRESSION:2:1101:177425480:177435480,SYNTHESIZER:1:REGRESSION:3:1101:105829190:105839190,SYNTHESIZER:1:REGRESSION:3:1101:113956240:113966240,SYNTHESIZER:1:REGRESSION:3:1101:119669980:119679980,SYNTHESIZER:1:REGRESSION:3:1101:131014380:131024380,SYNTHESIZER:1:REGRESSION:3:1101:162137330:162147330,SYNTHESIZER:1:REGRESSION:3:1101:185301520:185311520,SYNTHESIZER:1:REGRESSION:4:1101:135013380:135023380,SYNTHESIZER:1:REGRESSION:4:1101:160998930:161008930,SYNTHESIZER:1:REGRESSION:4:1101:162137130:162147130	chr10:32017143-chr10:43114480	0.0	0.2542372881355932	0.1271186440677966	15	False		FAIL	confidence_below_min(medium<high)
CD74	ROS1	-/-	-/-	chr5:150404680	chr6:117324415	CDS/splice-site	CDS/splice-site	translocation	8	4	1	3405	12	medium	in-frame	.	CLIP__MHC2_interacting(100%),Class_II_MHC-associated_invariant_chain_trimerisation_domain(100%)|Protein_kinase_domain(100%)	.	.	ENSG00000019582.16	ENSG00000047936.11	ENST00000009530.12	ENST00000368507.8	upstream	downstream	duplicates(1)	GGGAGCTTCCCGGAGAACCTGAGACACCTTAAGAACACCATGGAGACCATAGACTGGAAG___GTCTTTGAGAGCTGGATGCACCATTGGCTCCTGTTTGAAATGAGCAGGCACTCCTTGGAGCAAAAGCCCACTGACGCTCCACCGAAAG|ATGATTTTTGGATACCAGAAACAAGTTTCATACTTACTATTATAGTTGGAATATTTCTGGTTGTTACAATCCCACTGACCTTTG___TCTGGCATAGAAGATTAAAGAATCAAAAAAGTGCCAAGGAAGGGGTGACAGTGCTTATAAACGAA	GSFPENLRHLKNTMETIDWKVFESWMHHWLLFEMSRHSLEQKPTDAPPK|dDFWIPETSFILTIIVGIFLVVTIPLTFVWHRRLKNQKSAKEGVTVLIN	SYNTHESIZER:1:REGRESSION:1:1101:165849850:165859850,SYNTHESIZER:1:REGRESSION:2:1101:141458070:141468070,SYNTHESIZER:1:REGRESSION:2:1101:155946520:155956520,SYNTHESIZER:1:REGRESSION:2:1101:163839600:163849600,SYNTHESIZER:1:REGRESSION:2:1101:177099000:177109000,SYNTHESIZER:1:REGRESSION:4:1101:147556630:147566630,SYNTHESIZER:1:REGRESSION:4:1101:165006360:165016360,SYNTHESIZER:1:REGRESSION:4:1101:185288800:185298800,SYNTHESIZER:1:REGRESSION:1:1101:123501700:123511700,SYNTHESIZER:1:REGRESSION:2:1101:163939440:163949440,SYNTHESIZER:1:REGRESSION:3:1101:168414720:168424720,SYNTHESIZER:1:REGRESSION:4:1101:167689610:167699610,SYNTHESIZER:1:REGRESSION:2:1101:159296320:159306320,SYNTHESIZER:1:REGRESSION:4:1101:139409330:139419330	chr5:150404680-chr6:117324415	0.0024901127874615496	0.2727272727272727	0.13760869275736712	13	False		FAIL	confidence_below_min(medium<high)
ZNF814	ZNF814	-/+	-/+	chr19:57874584	chr19:57874502	CDS	CDS	duplication/ITD	4	6	0	56	43	medium	.	.	.	.	.	ENSG00000204514.10	ENSG00000204514.10	.	.	downstream	upstream	duplicates(14)	ATGTTTTTTTTCAGTGTGAACTCTCTGATGATTACTGAAGCTAACATATTTGCTAAAGGATTTCCCACATTCTCCACATTCAT|ATGTTTTTTTTCAGTGTGAACTCTCTGATGATTACTGAAGCTAACATATTTGCTAAAGGATTTCCCACATTCTCCACATTCATGTTTTTTTTCAGTGTGAACTCTCTGATGATTACTCAAGCTAGCATATTTGCTAAAGGACTTCCC	.	SYNTHESIZER:1:REGRESSION:1:1101:118571770:118581770,SYNTHESIZER:1:REGRESSION:1:1101:118571770:118581770,SYNTHESIZER:1:REGRESSION:3:1101:111603970:111613970,SYNTHESIZER:1:REGRESSION:3:1101:111603970:111613970,SYNTHESIZER:1:REGRESSION:4:1101:111862970:111872970,SYNTHESIZER:1:REGRESSION:4:1101:173906820:173916820,SYNTHESIZER:1:REGRESSION:4:1101:173906820:173916820,SYNTHESIZER:1:REGRESSION:1:1101:145238390:145248390,SYNTHESIZER:1:REGRESSION:1:1101:179968480:179978480,SYNTHESIZER:1:REGRESSION:4:1101:111862970:111872970,SYNTHESIZER:1:REGRESSION:4:1101:175836680:175846680,SYNTHESIZER:1:REGRESSION:4:1101:175836680:175846680,SYNTHESIZER:1:REGRESSION:4:1101:175836680:175846680,SYNTHESIZER:1:REGRESSION:1:1101:118571770:118581770,SYNTHESIZER:1:REGRESSION:3:1101:111603970:111613970,SYNTHESIZER:1:REGRESSION:4:1101:173906820:173916820,SYNTHESIZER:1:REGRESSION:1:1101:100925280:100935280,SYNTHESIZER:1:REGRESSION:1:1101:157774900:157784900,SYNTHESIZER:1:REGRESSION:1:1101:167291740:167301740,SYNTHESIZER:1:REGRESSION:1:1101:179968480:179978480,SYNTHESIZER:1:REGRESSION:1:1101:157774900:157784900,SYNTHESIZER:1:REGRESSION:1:1101:167291740:167301740,SYNTHESIZER:1:REGRESSION:1:1101:179968480:179978480,SYNTHESIZER:1:REGRESSION:1:1101:179968480:179978480	chr19:57874584-chr19:57874502	0.06666666666666667	0.12244897959183673	0.0945578231292517	10	False		FAIL	confidence_below_min(medium<high)
NCOR2	NCOR2	-/-	-/-	chr12:124402513	chr12:124402515	CDS	CDS	duplication/ITD	49	0	0	497	405	low	in-frame	.	G-protein_pathway_suppressor_2-interacting_domain(100%)|Myb-like_DNA-binding_domain(100%)	.	.	ENSG00000196498.13	ENSG00000196498.13	ENST00000458234.5	ENST00000458234.5	upstream	downstream	duplicates(16),low_entropy(52),mismappers(1)	TCTATTACTACCTGACTAAGAAGAATGAGAACTATAAGAGCCTGGTGAGACGGAGCTATCGGCGCCGCGGCAAGAGCCAG___CAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC|AGCCCATGCCCCGCAGCAGCCAGGAGGAGAAAGATGAGAAGGAGAAGGAAAAGGAGGCGGAGAAGGAGGA	YYYLTKKNENYKSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQ|qPMPRSSQEEKDEKEKEKEAEKE	SYNTHESIZER:1:REGRESSION:1:1101:102278550:102288550,SYNTHESIZER:1:REGRESSION:1:1101:103087880:103097880,SYNTHESIZER:1:REGRESSION:1:1101:103784990:103794990,SYNTHESIZER:1:REGRESSION:1:1101:106363680:106373680,SYNTHESIZER:1:REGRESSION:1:1101:110209060:110219060,SYNTHESIZER:1:REGRESSION:1:1101:111728240:111738240,SYNTHESIZER:1:REGRESSION:1:1101:114420360:114430360,SYNTHESIZER:1:REGRESSION:1:1101:133988000:133998000,SYNTHESIZER:1:REGRESSION:1:1101:139600830:139610830,SYNTHESIZER:1:REGRESSION:1:1101:142314270:142324270,SYNTHESIZER:1:REGRESSION:1:1101:144645310:144655310,SYNTHESIZER:1:REGRESSION:1:1101:146911280:146921280,SYNTHESIZER:1:REGRESSION:1:1101:148112980:148122980,SYNTHESIZER:1:REGRESSION:1:1101:150990180:151000180,SYNTHESIZER:1:REGRESSION:1:1101:153772760:153782760,SYNTHESIZER:1:REGRESSION:1:1101:154339040:154349040,SYNTHESIZER:1:REGRESSION:1:1101:158244560:158254560,SYNTHESIZER:1:REGRESSION:1:1101:158691540:158701540,SYNTHESIZER:1:REGRESSION:1:1101:160655900:160665900,SYNTHESIZER:1:REGRESSION:1:1101:162290710:162300710,SYNTHESIZER:1:REGRESSION:1:1101:170743640:170753640,SYNTHESIZER:1:REGRESSION:1:1101:175166320:175176320,SYNTHESIZER:1:REGRESSION:1:1101:176099600:176109600,SYNTHESIZER:1:REGRESSION:1:1101:184219480:184229480,SYNTHESIZER:1:REGRESSION:1:1101:185421920:185431920,SYNTHESIZER:1:REGRESSION:2:1101:110415010:110425010,SYNTHESIZER:1:REGRESSION:2:1101:111191770:111201770,SYNTHESIZER:1:REGRESSION:2:1101:112356140:112366140,SYNTHESIZER:1:REGRESSION:2:1101:115633850:115643850,SYNTHESIZER:1:REGRESSION:2:1101:115920500:115930500,SYNTHESIZER:1:REGRESSION:2:1101:117257090:117267090,SYNTHESIZER:1:REGRESSION:2:1101:119060660:119070660,SYNTHESIZER:1:REGRESSION:2:1101:127583400:127593400,SYNTHESIZER:1:REGRESSION:2:1101:128659390:128669390,SYNTHESIZER:1:REGRESSION:2:1101:134085680:134095680,SYNTHESIZER:1:REGRESSION:2:1101:140189350:140199350,SYNTHESIZER:1:REGRESSION:2:1101:143297350:143307350,SYNTHESIZER:1:REGRESSION:2:1101:146465960:146475960,SYNTHESIZER:1:REGRESSION:2:1101:149254090:149264090,SYNTHESIZER:1:REGRESSION:2:1101:160535420:160545420,SYNTHESIZER:1:REGRESSION:2:1101:161393630:161403630,SYNTHESIZER:1:REGRESSION:2:1101:164289190:164299190,SYNTHESIZER:1:REGRESSION:2:1101:173687160:173697160,SYNTHESIZER:1:REGRESSION:2:1101:175327640:175337640,SYNTHESIZER:1:REGRESSION:2:1101:175493000:175503000,SYNTHESIZER:1:REGRESSION:2:1101:175847140:175857140,SYNTHESIZER:1:REGRESSION:2:1101:177208600:177218600,SYNTHESIZER:1:REGRESSION:2:1101:184776260:184786260,SYNTHESIZER:1:REGRESSION:2:1101:188780140:188790140,SYNTHESIZER:1:REGRESSION:2:1101:193532700:193542700,SYNTHESIZER:1:REGRESSION:2:1101:196740780:196750780,SYNTHESIZER:1:REGRESSION:2:1101:198029580:198039580,SYNTHESIZER:1:REGRESSION:3:1101:108399000:108409000,SYNTHESIZER:1:REGRESSION:3:1101:108598980:108608980,SYNTHESIZER:1:REGRESSION:3:1101:109664690:109674690,SYNTHESIZER:1:REGRESSION:3:1101:122138690:122148690,SYNTHESIZER:1:REGRESSION:3:1101:127503490:127513490,SYNTHESIZER:1:REGRESSION:3:1101:128512150:128522150,SYNTHESIZER:1:REGRESSION:3:1101:130731240:130741240,SYNTHESIZER:1:REGRESSION:3:1101:132262610:132272610,SYNTHESIZER:1:REGRESSION:3:1101:132364420:132374420,SYNTHESIZER:1:REGRESSION:3:1101:143369950:143379950,SYNTHESIZER:1:REGRESSION:3:1101:146607470:146617470,SYNTHESIZER:1:REGRESSION:3:1101:148396350:148406350,SYNTHESIZER:1:REGRESSION:3:1101:153242500:153252500,SYNTHESIZER:1:REGRESSION:3:1101:154458340:154468340,SYNTHESIZER:1:REGRESSION:3:1101:158251450:158261450,SYNTHESIZER:1:REGRESSION:3:1101:161118690:161128690,SYNTHESIZER:1:REGRESSION:3:1101:162670200:162680200,SYNTHESIZER:1:REGRESSION:3:1101:165293910:165303910,SYNTHESIZER:1:REGRESSION:3:1101:167244030:167254030,SYNTHESIZER:1:REGRESSION:3:1101:169107240:169117240,SYNTHESIZER:1:REGRESSION:3:1101:170760020:170770020,SYNTHESIZER:1:REGRESSION:3:1101:175442240:175452240,SYNTHESIZER:1:REGRESSION:3:1101:175500360:175510360,SYNTHESIZER:1:REGRESSION:3:1101:176441820:176451820,SYNTHESIZER:1:REGRESSION:3:1101:180129200:180139200,SYNTHESIZER:1:REGRESSION:3:1101:181980680:181990680,SYNTHESIZER:1:REGRESSION:3:1101:183794240:183804240,SYNTHESIZER:1:REGRESSION:3:1101:184391420:184401420,SYNTHESIZER:1:REGRESSION:3:1101:191952320:191962320,SYNTHESIZER:1:REGRESSION:3:1101:193445360:193455360,SYNTHESIZER:1:REGRESSION:3:1101:197166420:197176420,SYNTHESIZER:1:REGRESSION:3:1101:199761720:199771720,SYNTHESIZER:1:REGRESSION:4:1101:102100170:102110170,SYNTHESIZER:1:REGRESSION:4:1101:103370170:103380170,SYNTHESIZER:1:REGRESSION:4:1101:105386010:105396010,SYNTHESIZER:1:REGRESSION:4:1101:115630300:115640300,SYNTHESIZER:1:REGRESSION:4:1101:120034580:120044580,SYNTHESIZER:1:REGRESSION:4:1101:120280020:120290020,SYNTHESIZER:1:REGRESSION:4:1101:121045830:121055830,SYNTHESIZER:1:REGRESSION:4:1101:126377230:126387230,SYNTHESIZER:1:REGRESSION:4:1101:128178850:128188850,SYNTHESIZER:1:REGRESSION:4:1101:133439710:133449710,SYNTHESIZER:1:REGRESSION:4:1101:144516110:144526110,SYNTHESIZER:1:REGRESSION:4:1101:147101580:147111580,SYNTHESIZER:1:REGRESSION:4:1101:148012120:148022120,SYNTHESIZER:1:REGRESSION:4:1101:148386590:148396590,SYNTHESIZER:1:REGRESSION:4:1101:148545510:148555510,SYNTHESIZER:1:REGRESSION:4:1101:148811660:148821660,SYNTHESIZER:1:REGRESSION:4:1101:157665940:157675940,SYNTHESIZER:1:REGRESSION:4:1101:157814590:157824590,SYNTHESIZER:1:REGRESSION:4:1101:158843910:158853910,SYNTHESIZER:1:REGRESSION:4:1101:161290090:161300090,SYNTHESIZER:1:REGRESSION:4:1101:165145950:165155950,SYNTHESIZER:1:REGRESSION:4:1101:165858630:165868630,SYNTHESIZER:1:REGRESSION:4:1101:166472950:166482950,SYNTHESIZER:1:REGRESSION:4:1101:166491170:166501170,SYNTHESIZER:1:REGRESSION:4:1101:169956380:169966380,SYNTHESIZER:1:REGRESSION:4:1101:173262880:173272880,SYNTHESIZER:1:REGRESSION:4:1101:185496600:185506600,SYNTHESIZER:1:REGRESSION:4:1101:190599520:190609520,SYNTHESIZER:1:REGRESSION:4:1101:190686720:190696720,SYNTHESIZER:1:REGRESSION:4:1101:191099560:191109560,SYNTHESIZER:1:REGRESSION:4:1101:194983200:194993200,SYNTHESIZER:1:REGRESSION:4:1101:195744120:195754120,SYNTHESIZER:1:REGRESSION:4:1101:199977040:199987040,SYNTHESIZER:1:REGRESSION:1:1101:170193660:170203660	chr12:124402513-chr12:124402515	0.08974358974358974	0.0	0.04487179487179487	49	False		FAIL	confidence_below_min(low<high)
BAZ1B	BAZ1B	-/-	-/-	chr7:73477031	chr7:73477090	CDS	CDS	duplication/ITD	11	2	0	144	175	low	in-frame	.	ATP-utilising_chromatin_assembly_and_remodelling_N-terminal(100%),WSTF__HB1__Itc1p__MBD9_motif_1(100%)|Bromodomain(100%),PHD-finger(100%),Williams-Beuren_syndrome_DDT_(WSD)__D-TOX_E_motif(100%)	.	.	ENSG00000009954.11	ENSG00000009954.11	ENST00000339594.9	ENST00000339594.9	upstream	downstream	duplicates(4),low_entropy(1)	CTAGAAAAGCTGGAGACCTCTGAATTTTTTGAGCTGACGTCAGAGGAGAAGCTACAGATCTTGACAGCACTGTGCCACCGGATCCTCATGACATACTCAGTGCAAGACCACATGGAGACCAGACAGCAGATGTCTGCAGAGTTGTGGAAGGAACGGCTTGCTGTGTTGAAGGAAGAAAATGATAAGAAGAGAGCAGAGAAACAGAAACGGAAAGAAATGGAAGCCAAAAATAAAGAAAATGatAA|g|AAGAGAGCAGAGAAACAGAAACGGAAAGAAATGGAAGCCAAAAATAAAGAAAATGatAAg	LEKLETSEFFELTSEEKLQILTALCHRILMTYSVQDHMETRQQMSAELWKERLAVLKEENDKKRAEKQKRKEMEAKNKENdk|KRAEKQKRKEMEAKNKENd	SYNTHESIZER:1:REGRESSION:1:1101:147960690:147970690,SYNTHESIZER:1:REGRESSION:1:1101:147960690:147970690,SYNTHESIZER:1:REGRESSION:2:1101:111891100:111901100,SYNTHESIZER:1:REGRESSION:2:1101:111891100:111901100,SYNTHESIZER:1:REGRESSION:2:1101:132026350:132036350,SYNTHESIZER:1:REGRESSION:2:1101:132026350:132036350,SYNTHESIZER:1:REGRESSION:3:1101:161982140:161992140,SYNTHESIZER:1:REGRESSION:3:1101:163374320:163384320,SYNTHESIZER:1:REGRESSION:3:1101:163374320:163384320,SYNTHESIZER:1:REGRESSION:3:1101:168675600:168685600,SYNTHESIZER:1:REGRESSION:4:1101:143931060:143941060,SYNTHESIZER:1:REGRESSION:1:1101:157643810:157653810,SYNTHESIZER:1:REGRESSION:4:1101:105875590:105885590,SYNTHESIZER:1:REGRESSION:4:1101:164159770:164169770,SYNTHESIZER:1:REGRESSION:4:1101:192638900:192648900,SYNTHESIZER:1:REGRESSION:3:1101:161982140:161992140,SYNTHESIZER:1:REGRESSION:3:1101:168675600:168685600,SYNTHESIZER:1:REGRESSION:4:1101:143931060:143941060	chr7:73477031-chr7:73477090	0.07096774193548387	0.011299435028248588	0.041133588481866226	13	False		FAIL	confidence_below_min(low<high)
STX16	NPEPL1	+/+	+/+	chr20:58673711	chr20:58691724	CDS/splice-site	5'UTR/splice-site	deletion/read-through	2	7	0	95	30	low	out-of-frame	.	SNARE_domain(49%),Syntaxin(100%)|Cytosol_aminopeptidase_family__catalytic_domain(100%),M17_aminopeptidase_N-terminal_domain_2(100%)	.	.	ENSG00000124222.22	ENSG00000215440.12	ENST00000361830.7	ENST00000525967.5	downstream	upstream	duplicates(2)	GACGATAACACTCTTTACCATCGG___GGTTTTACAGAGGACCAGTTAGTTCTGGTGGAGCAGAACACACTGATGGTGGAAGAGCGGGAACGAGAGATTCGCCAGATTGTACAGTCCATTTCTGACCTGAATGAAATATTCAGGGACTTAGGGGCGATGATTGTAGAACAG___GGTACAGTCCTTGACAGAATTGACTATAACGTTGAACAGTCCTGTATCAAAACTGAAGATGGTTTGAAACAGCTTCACAAG|GtTGGTTATGAAGAAGAAACTCAAAATAACAGGAGTGGCTTATGGAACTACATGGAGGTAACAGAGGAGGGTACCAACCAAAGGCCCTTGAGCAATCAGGATGTTGGGTAACAGATTTTTGCTTTTAAATGACcCCTGGGTGGAGCTTCCCC	DDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHK|vgyeeetqnnrsglwnymevteegtnqrplsnqdvg*	SYNTHESIZER:1:REGRESSION:2:1101:156478760:156488760,SYNTHESIZER:1:REGRESSION:3:1101:138839090:138849090,SYNTHESIZER:1:REGRESSION:1:1101:178250240:178260240,SYNTHESIZER:1:REGRESSION:2:1101:116375130:116385130,SYNTHESIZER:1:REGRESSION:2:1101:151707580:151717580,SYNTHESIZER:1:REGRESSION:3:1101:101732110:101742110,SYNTHESIZER:1:REGRESSION:3:1101:149900710:149910710,SYNTHESIZER:1:REGRESSION:3:1101:185804560:185814560,SYNTHESIZER:1:REGRESSION:3:1101:195071800:195081800,SYNTHESIZER:1:REGRESSION:3:1101:196533860:196543860,SYNTHESIZER:1:REGRESSION:4:1101:142063050:142073050	chr20:58673711-chr20:58691724	0.020618556701030927	0.1891891891891892	0.10490387294511007	9	False		FAIL	confidence_below_min(low<high)
STX16	NPEPL1	+/+	+/+	chr20:58673711	chr20:58693737	CDS/splice-site	CDS/splice-site	deletion/read-through	0	1	0	95	75	low	in-frame	.	SNARE_domain(49%),Syntaxin(100%)|Cytosol_aminopeptidase_family__catalytic_domain(100%),M17_aminopeptidase_N-terminal_domain_2(74%)	.	.	ENSG00000124222.22	ENSG00000215440.12	ENST00000361830.7	ENST00000525967.5	downstream	upstream	.	GTCCTGTATCAAAACTGAAGATGGTTTGAAACAGCTTCACAAG|CTCTGGCAGGCTGCCCTGAGCACGCTCAACCCCAACCCCACGGACAGCTGTCCCCTCTACCTGAACTACGCC	SCIKTEDGLKQLHK|LWQAALSTLNPNPTDSCPLYLNY	SYNTHESIZER:1:REGRESSION:2:1101:153648890:153658890	chr20:58673711-chr20:58693737	0.0	0.013157894736842105	0.006578947368421052	1	False		FAIL	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)
SOGA3	KIAA0408	-/-	-/-	chr6:127473080	chr6:127454101	3'UTR	5'UTR/splice-site	deletion/read-through	3	4	0	14	13	low	stop-codon	.	Protein_SOGA_(100%)|Domain_of_unknown_function_(DUF4482)(100%)	.	.	ENSG00000214338.10	ENSG00000189367.15	ENST00000525778.5	ENST00000483725.8	upstream	downstream	duplicates(3),mismappers(1)	CTTCTCTTTGTCTTTGCATTTACCTTCCCAGATGTTCCAGCCTATCATTTTACTTATTCTCATTCTTGTATTATTTTCATCACTTTCTTACACAACAATATTTAAACTTGTCTTCCTTTTTACACTGTTTTTTGTACTGTAAATCTTTCATCATTTACCATTCATTGTAGTATTTTCAGTTTGTTTATTTTGTTCACCCTTCAAGACAAGAAGTAAAAGAAGTATAATTTCTGTAGTAACCAATGCTATAAAAACACTGAAGACTGCTTATTTCTTTA?AAAGATACAACTCATCTTACCAAGACCAAATTCAATAAGAAGCCCAAACACTAAAATATTTCAG|GCTTTATTTTAAAGGCAAGTGAGACTGCTTCAAATAAAACAACTTCAAGCTTCCAAGAAACAGTTAAGAGGAGGCAGAGAAGAGCAGAAACACTTCTTTGCTGACACTTACACTGTTGCCATGGACCTACATAAGCAGTGGGAGAACACAGAGACTAACTGGCATAAGGAAAAGATGGAATTACTGGACCAGTTTGACAATGAAAGAAAGGAATGGGAAAGTCAATGGAAGATTATGCAGAAGAAAATAGAAGAG___CTTTGCCGGGAAGTAAAGCTTTGGAGGAAAATCAATATCAATGAAcGTGCTAAGATCATTGATCTTTACCATGAGAAGACCAT	.	SYNTHESIZER:1:REGRESSION:1:1101:139942030:139952030,SYNTHESIZER:1:REGRESSION:1:1101:161927700:161937700,SYNTHESIZER:1:REGRESSION:1:1101:174053320:174063320,SYNTHESIZER:1:REGRESSION:2:1101:102758480:102768480,SYNTHESIZER:1:REGRESSION:2:1101:173391320:173401320,SYNTHESIZER:1:REGRESSION:3:1101:126265830:126275830,SYNTHESIZER:1:REGRESSION:4:1101:114576320:114586320,SYNTHESIZER:1:REGRESSION:4:1101:182634880:182644880,SYNTHESIZER:1:REGRESSION:1:1101:135817310:135827310,SYNTHESIZER:1:REGRESSION:3:1101:170471320:170481320,SYNTHESIZER:1:REGRESSION:3:1101:198861220:198871220	chr6:127473080-chr6:127454101	0.17647058823529413	0.23529411764705882	0.20588235294117646	7	False		FAIL	confidence_below_min(low<high);total_reads_below_min(7.0<8.0)
TUBA4B	TUBA4A	+/+	-/-	chr2:219271539	chr2:219250947	CDS	CDS	inversion	1	1	0	109	1374	low	out-of-frame	.	Tubulin/FtsZ_family__GTPase_domain(100%)|Tubulin_C-terminal_domain(100%)	.	.	ENSG00000243910.8	ENSG00000127824.14	ENST00000490341.3	ENST00000398989.2	downstream	downstream	.	AGCTTCTCTGCGCTTTGACGGGGCCCTCAATGT|ACCTGACAGAGTTCCAGACCAACCTGGTGCCCTACCCTCGCATCCACTTCCCCCTGG	ASLRFDGALNv|pdrvpdqpgalpshplpp	SYNTHESIZER:1:REGRESSION:4:1101:132613500:132623500	chr2:219271539-chr2:219250947	0.00909090909090909	0.0007272727272727272	0.004909090909090909	2	False		FAIL	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)
RBM14	RBM4	+/+	+/+	chr11:66617057	chr11:66643450	CDS/splice-site	CDS/splice-site	deletion/read-through	0	2	0	162	204	low	in-frame	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(72%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(6%),Zinc_knuckle(100%)	.	.	ENSG00000239306.5	ENSG00000173933.21	ENST00000310137.5	ENST00000408993.6	downstream	upstream	duplicates(1)	ACGAGCCAGGAACTGCGCAGCCTCTTCGAGCGCCGCGGACGCGTCATCGAGTGTGACGTGGTGAAAG|GCAAACGAATGCACGTGCAGTTGTCCACCAGCCGGCTTAGGACTGCGCCCGGGATGGGAGACCAGAGCGGCTGCTATCGGTGCGGGAAAGAGGGGCACTGGTCCAAAGAGTGTCCGATAGATCGTTCAGGCCGCGTGGCAGACTTGAaCGAGC	TSQELRSLFERRGRVIECDVVK|gKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLnE	SYNTHESIZER:1:REGRESSION:2:1101:186046680:186056680,SYNTHESIZER:1:REGRESSION:3:1101:163118200:163128200,SYNTHESIZER:1:REGRESSION:4:1101:169427560:169437560	chr11:66617057-chr11:66643450	0.0	0.009708737864077669	0.0048543689320388345	2	False		FAIL	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)
RBM14	RBM4	+/+	+/+	chr11:66617057	chr11:66646027	CDS/splice-site	CDS/splice-site	deletion/read-through	0	1	0	162	185	low	in-frame	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(72%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(2%)	.	.	ENSG00000239306.5	ENSG00000173933.21	ENST00000310137.5	ENST00000398692.8	downstream	upstream	duplicates(1)	GTCGGCTGCATGCACGAGCCAGGAACTGCGCAGCCTCTTCGAGCGCCGCGGACGCGTCATCGAGTGTGACGTGGTGAAAG|GTGGGATGTGTGTGGGCTGAAATTCCGAGCTGCGGTTGTGCATGAGAATACACCCTTCGTGGTACCCCAT...GGGACGTTCTCGGCTCTGTGCGTTCAGTCCCTCAGGAACCGTGGACCTTAATTTACCTTGCTAAGTTCAGACCTTCTCTTCCTTTCCTTTCCTTTCCTCTCCTGCCCATTTTCCTGTTCTTCTGTCCTTCAATACTTCTGTAGCTTCCCA	SAACTSQELRSLFERRGRVIECDVVK|gGMCVG*	SYNTHESIZER:1:REGRESSION:4:1101:107837050:107847050,SYNTHESIZER:1:REGRESSION:4:1101:178501800:178511800	chr11:66617057-chr11:66646027	0.0	0.005376344086021506	0.002688172043010753	1	False		FAIL	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)
RBM14	RBM4	+/+	+/+	chr11:66617057	chr11:66639700	CDS/splice-site	5'UTR/splice-site	deletion/read-through	0	0	0	162	257	low	out-of-frame	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(72%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%),Zinc_knuckle(100%)	.	.	ENSG00000239306.5	ENSG00000173933.21	ENST00000310137.5	ENST00000396053.9	downstream	upstream	duplicates(6),read_through(33)	ACGGTCATGAGCTGCGCCGTCATGAAACAGTTCGCCTTCGTGCACATGCGCGAGAACGCGGGCGCGCTGCGCGCCATCGAAGCCCTGCACGGCCACGAGCTGCGGCCGGGGCGCGCGCTCGTGGTGGAGATGTCGCGCCCAAGGCCTCTTAATACTTGGAAGATTTTCGTGGGCAATGTGTCGGCTGCATGCACGAGCCAGGAACTGCGCAGCCTCTTCGAGCGCCGCGGACGCGTCATCGAGTGTGACGTGGTGAAAG|GCTCTTGTCAGGATGGTGAAGCTGTTCATCGGAAACCTGCCCCGGGAGGCTACAGAGCAGGAGATTCGCTCACTCTTCGAGCAGTATGGGAAGGTGCTGGAATGTGACATCATTAAGAATTACGGCTTTGTGCACATAGAAGACAAGACGGCAGCTGAGGATGCCATACGCAACCTGCACCATTACAAGCTTCATGGGGTGAACATCAACGTGGAAGCCAGC	TVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK|gscqdgeavhrkpapggyragdsltlravwegagm*	SYNTHESIZER:1:REGRESSION:1:1101:134675920:134685920,SYNTHESIZER:1:REGRESSION:1:1101:176814280:176824280,SYNTHESIZER:1:REGRESSION:2:1101:104001560:104011560,SYNTHESIZER:1:REGRESSION:2:1101:126569310:126579310,SYNTHESIZER:1:REGRESSION:2:1101:130574640:130584640,SYNTHESIZER:1:REGRESSION:2:1101:135811210:135821210,SYNTHESIZER:1:REGRESSION:2:1101:146092470:146102470,SYNTHESIZER:1:REGRESSION:2:1101:167070800:167080800,SYNTHESIZER:1:REGRESSION:2:1101:193335460:193345460,SYNTHESIZER:1:REGRESSION:3:1101:119802240:119812240,SYNTHESIZER:1:REGRESSION:4:1101:194339120:194349120,SYNTHESIZER:1:REGRESSION:1:1101:107110750:107120750,SYNTHESIZER:1:REGRESSION:1:1101:116371920:116381920,SYNTHESIZER:1:REGRESSION:1:1101:139837070:139847070,SYNTHESIZER:1:REGRESSION:1:1101:157164450:157174450,SYNTHESIZER:1:REGRESSION:1:1101:162247920:162257920,SYNTHESIZER:1:REGRESSION:1:1101:166884950:166894950,SYNTHESIZER:1:REGRESSION:1:1101:199012080:199022080,SYNTHESIZER:1:REGRESSION:2:1101:105147080:105157080,SYNTHESIZER:1:REGRESSION:2:1101:129299300:129309300,SYNTHESIZER:1:REGRESSION:2:1101:132357180:132367180,SYNTHESIZER:1:REGRESSION:2:1101:136246760:136256760,SYNTHESIZER:1:REGRESSION:2:1101:144006140:144016140,SYNTHESIZER:1:REGRESSION:2:1101:156183740:156193740,SYNTHESIZER:1:REGRESSION:2:1101:175114780:175124780,SYNTHESIZER:1:REGRESSION:2:1101:194392420:194402420,SYNTHESIZER:1:REGRESSION:2:1101:198445180:198455180,SYNTHESIZER:1:REGRESSION:3:1101:110334560:110344560,SYNTHESIZER:1:REGRESSION:3:1101:116804060:116814060,SYNTHESIZER:1:REGRESSION:3:1101:122269700:122279700,SYNTHESIZER:1:REGRESSION:3:1101:137698890:137708890,SYNTHESIZER:1:REGRESSION:3:1101:149001470:149011470,SYNTHESIZER:1:REGRESSION:3:1101:153603870:153613870,SYNTHESIZER:1:REGRESSION:3:1101:153604070:153614070,SYNTHESIZER:1:REGRESSION:3:1101:181744040:181754040,SYNTHESIZER:1:REGRESSION:3:1101:194003200:194013200,SYNTHESIZER:1:REGRESSION:4:1101:169832480:169842480,SYNTHESIZER:1:REGRESSION:4:1101:172472820:172482820,SYNTHESIZER:1:REGRESSION:4:1101:180286560:180296560	chr11:66617057-chr11:66639700	0.0	0.0	0.0	0	False		FAIL	confidence_below_min(low<high);total_reads_below_min(0.0<8.0)
MALT1	MALT1	+/+	+/+	chr18:58723251	chr18:58709378	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	2	0	0	126	253	low	in-frame	.	Caspase_domain(31%),Immunoglobulin_domain(100%)|Caspase_domain(100%),Immunoglobulin_domain(53%),MALT1_Ig-like_domain(100%)	.	.	ENSG00000172175.15	ENSG00000172175.15	ENST00000649217.2	ENST00000649217.2	downstream	upstream	.	ATTACCGGGAGCACCCCAAGCTCAAAGCTCCTTTGGTGGATGTGTACGAATTGACTAACTTACTGAGACAGCTGGACTTCAAAGTGGTTTCACTGTTGGATCTTACTGAATATGAGATGCGTAATGCTGTGGATGAGTTTTTACTCCTTTTAGACAAGGGAGTATATG|GAAGTGTTGATGGCGTCTCTGAATCCAAGTTGCAAATCTGTGTTGAACCAACTTCCCAAAAGCTGAT	YREHPKLKAPLVDVYELTNLLRQLDFKVVSLLDLTEYEMRNAVDEFLLLLDKGVY|gSVDGVSESKLQICVEPTSQKL	SYNTHESIZER:1:REGRESSION:2:1101:157873470:157883470,SYNTHESIZER:1:REGRESSION:3:1101:135785870:135795870	chr18:58723251-chr18:58709378	0.015625	0.0	0.0078125	2	False		FAIL	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)
TMPRSS2	ERG	-/-	-/-	chr21:41508081	chr21:38584945	5'UTR/splice-site	5'UTR/splice-site	deletion	0	1	0	0	7	low	.	.	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	.	.	ENSG00000184012.14	ENSG00000157554.19	ENST00000332149.10	ENST00000442448.5	upstream	downstream	.	AGCGCCGCCTGGAGCGCGGCAG|GTTATTCCAGGATCTTTGGAGACCCGAGGAAAGCCGTGTTGACCAAAAGCAAGACAAATGACTCtCAGAGAAAAAAGATGGCAGAACCAAGGGCAACTAAAG___CCGTCAGGTTCTGAACAGCTGGTAGATGGGCTGGCTTACTGAAGGACATGATTCAGACTGTCCCGGACCCAGCAGCTCATATCAAGG	.	SYNTHESIZER:1:REGRESSION:1:1101:169432080:169442080	chr21:41508081-chr21:38584945		0.125		1	False		FAIL	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)