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- Filename
- rna_s1200_S21.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
- Full Path
- s3://natera-rnd-pltf-dev-s3-gitlab-results/rnafusion/build2803284/baseline-run/63723377/starfusion/rna_s1200_S21.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
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- 11.5 KB
- Workflow Run
- gitlab-rnafusion-build2803284-baseline-run-63723377
- Published
- Jun 05, 2026 5:23 PM
Content
View in new tab| #FusionName | JunctionReadCount | SpanningFragCount | est_J | est_S | SpliceType | LeftGene | LeftBreakpoint | RightGene | RightBreakpoint | JunctionReads | SpanningFrags | LargeAnchorSupport | FFPM | LeftBreakDinuc | LeftBreakEntropy | RightBreakDinuc | RightBreakEntropy | annots | breakpoint_ID | blacklisted | blacklist_reasons | aih_curated_reason | CALL | filter_reason | FILTER | total_reads |
| FGFR3--TACC3 | 46 | 1 | 46.0 | 1.0 | ONLY_REF_SPLICE | FGFR3^ENSG00000068078.20 | chr4:1806934:+ | TACC3^ENSG00000013810.20 | chr4:1739702:+ | &rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:28051130:28061130,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:34880460:34890460,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:41244120:41254120,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:41260000:41270000,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:49350600:49360600,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:49402150:49412150,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:50174490:50184490,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:52961340:52971340,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:6243410:6253410,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:68040290:68050290,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:80529760:80539760,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:83249940:83259940,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:8425410:8435410,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:87889880:87899880,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:97233870:97243870,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:99213420:99223420,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:27149600:27159600,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:30722060:30732060,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:44764460:44774460,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:54154280:54164280,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:56369770:56379770,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:57524010:57534010,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:61323240:61333240,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:65879710:65889710,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:90495290:90505290,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:9544450:9554450,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:26578090:26588090,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:33716140:33726140,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:35280880:35290880,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:41854800:41864800,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:49608860:49618860,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:60441500:60451500,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:61200620:61210620,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:65504970:65514970,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:69111040:69121040,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:72481000:72491000,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:93427820:93437820,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:13036270:13046270,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:21171910:21181910,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:22353200:22363200,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:28479970:28489970,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:4577000:4587000,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:52511650:52521650,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:67524780:67534780,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:69995900:70005900,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:79947230:79957230 | &rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:6194060:6204060 | YES_LDAS | 4.7294 | GT | 1.8892 | AG | 1.7819 | ["ChimerKB","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","Klijn_CellLines","DEEPEST2019","GUO2018CR_TCGA","ChimerPub","TumorFusionsNAR2018","Cosmic","INTRACHROMOSOMAL[chr4:0.05Mb]","LOCAL_REARRANGEMENT:+:[48122]"] | chr4:1806934-chr4:1739702 | False | 1 | PASS | 47 | |||
| LMNA--NTRK1 | 26 | 0 | 26.0 | 0.0 | ONLY_REF_SPLICE | LMNA^ENSG00000160789.23 | chr1:156130773:+ | NTRK1^ENSG00000198400.13 | chr1:156874906:+ | &rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:36363320:36373320,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:51281320:51291320,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:60878880:60888880,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:63699200:63709200,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:67566700:67576700,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:74283100:74293100,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:93263280:93273280,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:31411120:31421120,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:48911230:48921230,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:49502720:49512720,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:53244670:53254670,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:58614140:58624140,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:837380:847380,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:96068060:96078060,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:10266310:10276310,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:28659750:28669750,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:61339670:61349670,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:71272030:71282030,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:7999190:8009190,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:91269240:91279240,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:13375770:13385770,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:19005640:19015640,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:22891390:22901390,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:50758220:50768220,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:83123410:83133410,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:96862140:96872140 | . | YES_LDAS | 2.6163 | GT | 1.7465 | AG | 1.5058 | ["ChimerKB","ChimerPub","Cosmic","TCGA_StarF2019","INTRACHROMOSOMAL[chr1:0.68Mb]"] | chr1:156130773-chr1:156874906 | False | 1 | PASS | 26 | |||
| FGFR3--BAIAP2L1 | 21 | 1 | 21.0 | 1.0 | ONLY_REF_SPLICE | FGFR3^ENSG00000068078.20 | chr4:1806934:+ | BAIAP2L1^ENSG00000006453.14 | chr7:98362432:- | &rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:10416680:10426680,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:11271270:11281270,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:35109030:35119030,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:38838690:38848690,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:40392150:40402150,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:42849500:42859500,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:46057530:46067530,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:54511420:54521420,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:66861940:66871940,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:84946680:84956680,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:42089380:42099380,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:55616890:55626890,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:56578990:56588990,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:76883530:76893530,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:39082850:39092850,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:58463390:58473390,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:74943610:74953610,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:87706670:87716670,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:4348500:4358500,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:5140310:5150310,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:8342020:8352020 | &rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:20960190:20970190 | YES_LDAS | 2.2138 | GT | 1.8892 | AG | 1.8062 | ["ChimerKB","Klijn_CellLines","ChimerPub","Cosmic","CCLE_StarF2019","INTERCHROMOSOMAL[chr4--chr7]"] | chr4:1806934-chr7:98362432 | False | 1 | PASS | 22 | |||
| ETV6--NTRK3 | 11 | 0 | 11.0 | 0.0 | ONLY_REF_SPLICE | ETV6^ENSG00000139083.11 | chr12:11869969:+ | NTRK3^ENSG00000140538.16 | chr15:87940753:- | &rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:46890280:46900280,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:62249160:62259160,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:83615090:83625090,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:89693730:89703730,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:30913640:30923640,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:54231830:54241830,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:96422090:96432090,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:14366840:14376840,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:46242410:46252410,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:83513290:83523290,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:98267340:98277340 | . | YES_LDAS | 1.1069 | GT | 1.7819 | AG | 1.9656 | ["ChimerKB","Larsson_TCGA","ChimerSeq","TCGA_StarF2019","YOSHIHARA_TCGA","HaasMedCancer","chimerdb_pubmed","chimerdb_omim","DEEPEST2019","GUO2018CR_TCGA","ChimerPub","TumorFusionsNAR2018","Cosmic","INTERCHROMOSOMAL[chr12--chr15]"] | chr12:11869969-chr15:87940753 | False | 1 | PASS | 11 | |||
| KIF5B--RET | 10 | 0 | 10.0 | 0.0 | ONLY_REF_SPLICE | KIF5B^ENSG00000170759.11 | chr10:32017143:- | RET^ENSG00000165731.20 | chr10:43114480:+ | &rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:50600840:50610840,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:62528620:62538620,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:61557770:61567770,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:1751670:1761670,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:90250180:90260180,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:98713850:98723850,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:10754780:10764780,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:22443210:22453210,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:89687090:89697090,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:96585540:96595540 | . | YES_LDAS | 1.0063 | GT | 1.9656 | AG | 1.9656 | ["ChimerKB","ChimerPub","Cosmic","ChimerSeq","INTRACHROMOSOMAL[chr10:11.02Mb]"] | chr10:32017143-chr10:43114480 | False | 1 | PASS | 10 | |||
| CD74--ROS1 | 10 | 0 | 10.0 | 0.0 | ONLY_REF_SPLICE | CD74^ENSG00000019582.16 | chr5:150404680:- | ROS1^ENSG00000047936.11 | chr6:117324415:- | &rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:45221450:45231450,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:65779580:65789580,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:12516850:12526850,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:26182540:26192540,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:57529150:57539150,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:59193120:59203120,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:56356590:56366590,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:78948620:78958620,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:81680000:81690000,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:88080800:88090800 | . | YES_LDAS | 1.0063 | GT | 1.7819 | AG | 1.7465 | ["ChimerKB","ChimerSeq","TCGA_StarF2019","Klijn_CellLines","chimerdb_pubmed","DEEPEST2019","GUO2018CR_TCGA","ChimerPub","TumorFusionsNAR2018","Cosmic","INTERCHROMOSOMAL[chr5--chr6]"] | chr5:150404680-chr6:117324415 | False | 1 | PASS | 10 | |||
| PAX8--PPARG | 8 | 0 | 8.0 | 0.0 | ONLY_REF_SPLICE | PAX8^ENSG00000125618.18 | chr2:113235394:- | PPARG^ENSG00000132170.23 | chr3:12379704:+ | &rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:16887500:16897500,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:1:1101:37680630:37690630,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:81157010:81167010,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:2:1101:84478580:84488580,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:14604220:14614220,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:3:1101:81025040:81035040,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:32146510:32156510,&rna_s1200_S21@SYNTHESIZER:1:REGRESSION:4:1101:84808600:84818600 | . | YES_LDAS | 0.805 | GT | 1.8295 | AG | 1.9329 | ["Mitelman","ChimerKB","ChimerSeq","TCGA_StarF2019","YOSHIHARA_TCGA","HaasMedCancer","chimerdb_pubmed","chimerdb_omim","DEEPEST2019","GUO2018CR_TCGA","ChimerPub","TumorFusionsNAR2018","Cosmic","INTERCHROMOSOMAL[chr2--chr3]"] | chr2:113235394-chr3:12379704 | False | 1 | PASS | 8 |
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