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Filename
rna_s1200_S21_seqtool_mqc.tsv
Full Path
s3://natera-rnd-pltf-dev-s3-gitlab-results/rnafusion/build2803284/baseline-run/63723377/QC/seqtool/rna_s1200_S21_seqtool_mqc.tsv
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4.7 KB
Workflow Run
gitlab-rnafusion-build2803284-baseline-run-63723377
Published
Jun 05, 2026 5:23 PM

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#id: 'seqtools_metrics'
#plot_type: 'generalstats'
#pconfig:
# reads:
# namespace: 'SeqTools (general stats)'
# title: 'Reads'
# description: 'SeqTools (general stats) — reads'
# format: '{:,.0f}'
# min: 0
# frac_unmapped:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Unmapped'
# description: 'SeqTools (general stats) — frac unmapped'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# frac_dupes:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Dupes'
# description: 'SeqTools (general stats) — frac dupes'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# unique_reads:
# namespace: 'SeqTools (general stats)'
# title: 'Unique Reads'
# description: 'SeqTools (general stats) — unique reads'
# format: '{:,.0f}'
# min: 0
# frac_reads_on_target:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Reads On Target'
# description: 'SeqTools (general stats) — frac reads on target'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# frac_pairs_on_target:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Pairs On Target'
# description: 'SeqTools (general stats) — frac pairs on target'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# frac_reads_off_target:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Reads Off Target'
# description: 'SeqTools (general stats) — frac reads off target'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# frac_pairs_off_target:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Pairs Off Target'
# description: 'SeqTools (general stats) — frac pairs off target'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# reads_on_target:
# namespace: 'SeqTools (general stats)'
# title: 'Reads On Target'
# description: 'SeqTools (general stats) — reads on target'
# format: '{:,.0f}'
# min: 0
# pairs_on_target:
# namespace: 'SeqTools (general stats)'
# title: 'Pairs On Target'
# description: 'SeqTools (general stats) — pairs on target'
# format: '{:,.0f}'
# min: 0
# reads_off_target:
# namespace: 'SeqTools (general stats)'
# title: 'Reads Off Target'
# description: 'SeqTools (general stats) — reads off target'
# format: '{:,.0f}'
# min: 0
# pairs_off_target:
# namespace: 'SeqTools (general stats)'
# title: 'Pairs Off Target'
# description: 'SeqTools (general stats) — pairs off target'
# format: '{:,.0f}'
# min: 0
# mean_depth:
# namespace: 'SeqTools (general stats)'
# title: 'Mean Depth'
# description: 'SeqTools (general stats) — mean depth'
# format: '{:,.2f}'
# q50_depth:
# namespace: 'SeqTools (general stats)'
# title: 'Q50 Depth'
# description: 'SeqTools (general stats) — q50 depth'
# format: '{:,.2f}'
# frac_bases_gt30x:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Bases Gt30X'
# description: 'SeqTools (general stats) — frac bases gt30x'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# frac_bases_gt100x:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Bases Gt100X'
# description: 'SeqTools (general stats) — frac bases gt100x'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# n_q30:
# namespace: 'SeqTools (general stats)'
# title: 'N Q30'
# description: 'SeqTools (general stats) — n q30'
# format: '{:,.2f}'
# gc_bias:
# namespace: 'SeqTools (general stats)'
# title: 'GC Bias'
# description: 'SeqTools (general stats) — Ratio of high GC (63-100%) to low GC (0-43%) reads'
# format: '{:,.3f}'
# min: 0
# scale: 'RdYlGn'
Sample reads frac_unmapped frac_dupes unique_reads frac_reads_on_target frac_pairs_on_target frac_reads_off_target frac_pairs_off_target reads_on_target pairs_on_target reads_off_target pairs_off_target mean_depth q50_depth frac_bases_gt30x frac_bases_gt100x n_q30 gc_bias
'rna_s1200_S21' 19875412 0.003853 0.183621 16225876 0.945347 0.972121 0.049933 0.027879 15339088 7832369 810206 224622 34.559207 5.0 0.293198 0.084685 0.985625 0.0
135 rows