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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/baa990f411c1f13d4606cd0d8d4dbe/rna_s1221_S42.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/76237e13b680c7e412ae0fad56c0d4/rna_s1200_S21.fastp.html
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/a39f53c523a3277980fd9061114316/rna_s1200_S21.ReadsPerGene.out.tab
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/3aed541a071be94d65fa1e25dcd577/rna_s1221_S42.fastp.html
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/dee80bb1b28d6b5f14532311216acf/rna_s1221_S42.Log.final.out
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/c6/dbe6aebf177853722aeb8c8df36fec/workflow_summary_mqc.yaml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/b5cc9d6bff1092a346018164a3bd4d/rna_s1200_S21_combined_fusions_arriba_visualisation.pdf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/1f7e99326a0e36f1ae65fde8c69213/rna_s1200_S21.pos.DupRate.xls
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/a39f53c523a3277980fd9061114316/rna_s1200_S21.Log.final.out
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/3aed541a071be94d65fa1e25dcd577/rna_s1221_S42.fastp.json
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/ed7e995687d40171ca2a0ecaf6a810/rna_s1221_S42_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/1aef2397d524f7b1bd832cea2c66f2/rna_s1221_S42.bam_stat.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/62eb15b6a03bd1cfa3d89cf924d53d/rna_s1221_S42.pos.DupRate.xls
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/07b09202f5ed49b7aaebbb2d6be800/rna_s1200_S21_contamination_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/dee80bb1b28d6b5f14532311216acf/rna_s1221_S42.ReadsPerGene.out.tab
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/95dec36bce7cf73fea420d27bef0b0/rna_s1221_S42.read_distribution.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/0e60a95290b232a234559f036e799f/rna_s1221_S42_preseq_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-s3-gitlab-results/rnafusion/build2803284/baseline-run/63723377/pipeline_info/nf_core_pipeline_software_mqc_versions.yml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/a0dae76550f5c2dbb595fe9900ed2c/rna_s1200_S21.read_distribution.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/d874b7cee1b227e5f86c8b17f18cce/rna_s1200_S21_trimmed_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/51/3f86514c11debbd03e2603e62c2c60/methods_description_mqc.yaml
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/cbb257561801e1e555ca7e7d2046e9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/be0fccdbb32dcc059fab409ad03ee2/rna_s1200_S21.bam_stat.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/b189cdfc4e5e4eadaa9ee0e359f7a9/rna_s1200_S21.junction_annotation.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/e0d27b0f879f2b41650cad9ad14aaa/rna_s1221_S42_seqtool_mqc.tsv
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/9a614bbaef1756f3dfbc7af6c65fbd/rna_s1200_S21_preseq_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/9c32e4d58d13ab5dea9148f0f4391b/rna_s1200_S21_seqtool_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/cb06da50c2c148d1c95be9a2fef77b/rna_s1200_S21.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/ed7e995687d40171ca2a0ecaf6a810/rna_s1221_S42_2_fastqc.zip
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/12bfe04853dce7ff640e5b211c1773/rna_s1200_S21.attempt1.command.log
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/032201f733c227ed05db5d01fa8a11/rna_s1221_S42_rseqc_extra_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/0fb312ceb3fe36e24d6ddc81721642/rna_s1200_S21_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/f9b1854a586c27900c174f0ad4dded/rna_s1221_S42.log
==> STAGING COMPLETE (56 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.7KyajFarz3
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 91/91  
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|    custom_content | rna_contamination: Found 2 General Statistics columns
|    custom_content | preseq_metrics: Found 2 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | seqtools_metrics: Found 2 General Statistics columns
|    custom_content | kallisto_qc_metrics: Found 2 General Statistics columns
|    custom_content | rseqc_extra_metrics: Found 2 General Statistics columns
|          kallisto | Found 2 reports
|            picard | Found 2 MarkDuplicates reports
|            preseq | Found 2 reports
|             rseqc | Found 2 read_distribution reports
|             rseqc | Found 2 inner_distance reports
|             rseqc | Found 2 read_duplication reports
|             rseqc | Found 2 junction_annotation reports
|             rseqc | Found 2 junction_saturation reports
|             rseqc | Found 2 infer_experiment reports
|             rseqc | Found 2 bam_stat reports
|              star | Found 2 reports and 2 gene count files
|             fastp | Found 2 reports
|            fastqc | Found 8 reports
|            fastqc | Found 4 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete