File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/139db269ba30aa6b81a5b42d17d0ad/output/Logs/Info.log
Size
2.8 KB
Attempt
2026-06-06T00:07:22Z thread 406 Sample sheet being processed by common lib? Yes
2026-06-06T00:07:22Z thread 406 SampleSheet Settings: 
2026-06-06T00:07:22Z thread 406   OverrideCycles = Y150;I8;I8;Y150
2026-06-06T00:07:22Z thread 406 
2026-06-06T00:07:22Z thread 406 shared-thread-linux-native-asio output is disabled
2026-06-06T00:07:22Z thread 406 bcl-convert Version 4.4.6
2026-06-06T00:07:22Z thread 406 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-06T00:07:22Z thread 406 Command Line: --tiles s_4 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-06T00:07:23Z thread 406 Conversion Begins.
2026-06-06T00:07:23Z thread 406 Input BCL Information:
2026-06-06T00:07:23Z thread 406     Read Structure: 2026-06-06T00:07:23Z thread 406 Y1502026-06-06T00:07:23Z thread 406 ;2026-06-06T00:07:23Z thread 406 I82026-06-06T00:07:23Z thread 406 ;2026-06-06T00:07:23Z thread 406 I82026-06-06T00:07:23Z thread 406 ;2026-06-06T00:07:23Z thread 406 Y1502026-06-06T00:07:23Z thread 406 
2026-06-06T00:07:23Z thread 406     RunInfo.xml file lists: 4 lanes, 4 tiles
2026-06-06T00:07:23Z thread 406     BCL file format: bcl.gz
2026-06-06T00:07:23Z thread 406     Positions file format: locs
2026-06-06T00:07:23Z thread 406     Filter file format: filter
2026-06-06T00:07:23Z thread 406 Conversion Information:
2026-06-06T00:07:23Z thread 406     Tile filtering: converting 1/4 tiles
2026-06-06T00:07:23Z thread 406     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-06T00:07:23Z thread 406     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-06T00:07:23Z thread 406     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-06T00:07:23Z thread 406     Sample Count: 2
2026-06-06T00:07:23Z thread 406     Expected number of sample FASTQ files to be created: 4
2026-06-06T00:07:23Z thread 406 # CPU hw threads available: 64
2026-06-06T00:07:23Z thread 406 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-06T00:07:23Z thread 406 SW compressors: 64
2026-06-06T00:07:23Z thread 406 SW decompressors: 32
2026-06-06T00:07:23Z thread 406 SW FASTQ compression level: 1
2026-06-06T00:07:26Z thread 406 Lane 4 Post-run Information:
2026-06-06T00:07:26Z thread 406     Total clusters: 5000000
2026-06-06T00:07:26Z thread 406     Total Genomic Reads: 10000000
2026-06-06T00:07:26Z thread 406     Total Genomic Input Gigabases 1.50
2026-06-06T00:07:26Z thread 406     Minimum reads for a sample: 4999702
2026-06-06T00:07:26Z thread 406     Maximum reads for a sample: 5000298
2026-06-06T00:07:26Z thread 406     Average reads per sample: 5000000.00
2026-06-06T00:07:26Z thread 406     Undetermined reads: 0
2026-06-06T00:07:26Z thread 406 Conversion Complete.