|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (Sig_18_Blood)
|
20s |
16s |
2s |
2s |
221.5 MB |
339% |
95.5 MB |
797.4 KB |
0 bytes |
800.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (Sig_18_tissue)
|
23s |
18s |
3s |
2s |
214.0 MB |
349% |
95.5 MB |
797.4 KB |
0 bytes |
800.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (HCC1395_BL)
|
6s |
2s |
2s |
2s |
217.4 MB |
272% |
95.4 MB |
692.0 KB |
0 bytes |
700.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (Sig_18_Blood)
|
7s |
3s |
3s |
1s |
213.2 MB |
264% |
95.4 MB |
692.0 KB |
0 bytes |
700.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:FILTERMUTECTCALLS (HCC1395_BL)
|
16s |
4s |
3s |
9s |
344.5 MB |
316% |
153.1 MB |
744.5 KB |
0 bytes |
756.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:FILTERMUTECTCALLS (Sig_18_Blood)
|
15s |
3s |
3s |
9s |
343.4 MB |
322% |
154.6 MB |
744.7 KB |
0 bytes |
756.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GATHERPILEUPSUMMARIES (HCC1395_BL)
|
15s |
11s |
2s |
2s |
208.8 MB |
263% |
95.6 MB |
710.6 KB |
0 bytes |
712.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GATHERPILEUPSUMMARIES (Sig_18_Blood)
|
8s |
4s |
3s |
1s |
212.4 MB |
268% |
95.6 MB |
710.8 KB |
0 bytes |
712.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (HCC1395_BL;chr21_44120631-44120778)
|
25s |
3s |
9s |
13s |
728.4 MB |
312% |
166.8 MB |
701.4 KB |
0 bytes |
712.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (HCC1395_BL;chr21_5117103-5117231)
|
34s |
3s |
16s |
15s |
722.0 MB |
201% |
224.4 MB |
706.4 KB |
0 bytes |
720.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (Sig_18_Blood;chr21_44120631-44120778)
|
29s |
3s |
9s |
17s |
803.8 MB |
270% |
170.4 MB |
701.6 KB |
0 bytes |
712.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (Sig_18_Blood;chr21_5117103-5117231)
|
38s |
3s |
19s |
16s |
848.2 MB |
178% |
237.0 MB |
706.4 KB |
0 bytes |
720.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:LEARNREADORIENTATIONMODEL (HCC1395_BL)
|
21s |
14s |
7s |
0s |
423.2 MB |
220% |
96.0 MB |
1.2 MB |
0 bytes |
1.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:LEARNREADORIENTATIONMODEL (Sig_18_Blood)
|
22s |
15s |
7s |
0s |
427.7 MB |
225% |
96.0 MB |
1.2 MB |
0 bytes |
1.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MERGE_MUTECT2 (HCC1395_BL)
|
18s |
13s |
3s |
2s |
271.8 MB |
313% |
95.8 MB |
722.8 KB |
0 bytes |
732.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MERGE_MUTECT2 (Sig_18_Blood)
|
19s |
14s |
4s |
1s |
255.2 MB |
299% |
95.8 MB |
723.0 KB |
0 bytes |
732.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MERGEMUTECTSTATS (HCC1395_BL)
|
7s |
3s |
3s |
1s |
251.2 MB |
264% |
95.0 MB |
691.0 KB |
0 bytes |
696.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MERGEMUTECTSTATS (Sig_18_Blood)
|
19s |
15s |
3s |
1s |
244.0 MB |
263% |
95.0 MB |
691.0 KB |
0 bytes |
696.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2 (HCC1395_BL;chr21_44120631-44120778)
|
41s |
3s |
13s |
25s |
961.9 MB |
304% |
175.7 MB |
1.3 MB |
0 bytes |
1.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2 (HCC1395_BL;chr21_5117103-5117231)
|
1m 5s |
3s |
38s |
24s |
903.3 MB |
197% |
290.3 MB |
1.4 MB |
0 bytes |
1.4 MB |
1 |