succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES (G1000_alleles_hg38.zip) 5s 3s - - 11.3 MB 96% 9.8 MB 30.0 MB 0 bytes 30.0 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC (GC_G1000_hg38.zip) 13s 3s 3s 7s 10.8 MB 74% 100.1 MB 345.6 MB 0 bytes 345.6 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI (G1000_loci_hg38.zip) 6s 3s - - 11.1 MB 101% 8.3 MB 33.1 MB 0 bytes 33.1 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT (RT_G1000_hg38.zip) 14s 4s 3s 7s 11.0 MB 100% 101.6 MB 387.4 MB 0 bytes 387.5 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed) 5s 3s - - 2.9 MB 164% 95.3 KB 49.9 KB 0 bytes 64.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21;null) 6s 4s - - 3.2 MB 83% 167.6 KB 21.4 KB 0 bytes 28.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr21_44120631-44120778;null) 3s 2s - - 3.3 MB 50% 120.0 KB 7.2 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr21_5117103-5117231;null) 4s 3s - - 3.3 MB 99% 151.9 KB 17.3 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 24s 17s 6s 1s 162.5 MB 296% 112.6 MB 84.6 KB 0 bytes 96.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 33s 3s 21s 9s 180.0 MB 136% 3.2 GB 494.0 KB 0 bytes 508.0 KB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 6s 5s 0s 0s 0 bytes 178% 73.1 KB 1.3 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_FASTQ_QC (fastq_qc_aggregation) 21s 18s 0s 2s 16.9 MB 99% 5.3 MB 8.3 KB 0 bytes 16.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_POSTDEDUP_QC (postdedup_qc_aggregation) 20s 16s 0s 3s 14.9 MB 107% 3.0 MB 18.0 KB 0 bytes 24.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (HCC1395_tumor) 6s 3s - - 10.5 MB 102% 170.3 MB 10.9 KB 0 bytes 12.0 KB 1
aborted NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (HCC1395_BL) - 59s - - - - - - - - 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (HCC1395_tumor) 1m 57s 10s 17s 1m 30s 129.3 MB 158% 333.9 MB 170.2 MB 0 bytes 170.2 MB 1
aborted NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (Sig_18_Blood) - 59s - - - - - - - - 1
aborted NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (Sig_18_tissue) - 59s - - - - - - - - 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (HCC1395_BL;chr21_44120631-44120778) 5m 0s 7s 15s 4m 38s 766.7 MB 239% 195.6 MB 22.3 MB 0 bytes 22.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (HCC1395_BL;chr21_5117103-5117231) 3m 43s 7s 40s 2m 56s 737.9 MB 165% 218.8 MB 80.9 MB 0 bytes 81.0 MB 1
141 items found |
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