succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed) 7s 4s - - 5.3 MB 107% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity;null) 4s 2s - - 5.9 MB 102% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr14_64122012-64122133;null) 5s 3s - - 6.0 MB 101% 1.5 MB 401.1 KB 0 bytes 408.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null) 5s 3s - - 6.2 MB 108% 1.6 MB 442.8 KB 0 bytes 448.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr19_47340800-47341813;null) 5s 3s - - 3.2 MB 68% 398.2 KB 84.1 KB 0 bytes 88.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_30730753-30730788;null) 5s 3s - - 6.1 MB 109% 1.4 MB 422.1 KB 0 bytes 428.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_93795409-93795507;null) 5s 3s - - 6.1 MB 85% 1.6 MB 432.2 KB 0 bytes 444.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 26s 17s 7s 2s 258.4 MB 389% 117.1 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 1m 24s 15s 58s 11s 271.7 MB 142% 5.9 GB 10.5 MB 0 bytes 10.7 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 7s 5s 0s 1s 0 bytes 167% 80.1 KB 3.0 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 19s 16s 0s 2s 15.5 MB 104% 3.5 MB 19.0 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_BIT) 18m 35s 14s 16m 15s 2m 5s 913.8 MB 226% 401.9 GB 369.0 GB 0 bytes 25.5 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_BU7) 13m 50s 14s 11m 53s 1m 42s 834.7 MB 230% 279.3 GB 253.1 GB 0 bytes 17.5 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_ELU) 12m 30s 15s 10m 45s 1m 29s 2.1 GB 229% 243.5 GB 220.7 GB 0 bytes 15.3 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_WTZ) 19m 31s 15s 17m 15s 2m 0s 3.0 GB 226% 473.8 GB 431.5 GB 274.7 MB 29.9 GB 2
succeeded NFCORE_SAREK:SAREK:AIH_CNV:ClusterPanelRegions (aih_cnv_cohort_cluster_panel_regions) 2m 34s 14s 2m 15s 4s 1.1 GB 111% 218.5 MB 15.4 MB 0 bytes 15.4 MB 1
failed NFCORE_SAREK:SAREK:AIH_CNV:ProcessBatch (aih_cnv_cohort_aih_cnv_process_batch) 5m 48s 2s 5m 46s 0s - - - - - - 3
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (869_BIT-N1-BDNA-1_B23H3TCLT3_1) 9s 2s 7s 0s 463.9 MB 218% 97.1 MB 696.3 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (869_BU7-N1-BDNA-1_B23H3TCLT3_1) 11s 3s 7s 1s 623.4 MB 220% 97.0 MB 698.7 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (869_ELU-N1-BDNA-1_B23H3TCLT3_1) 11s 3s 6s 2s 489.9 MB 224% 97.1 MB 699.2 KB 0 bytes 700.0 KB 1
1093 items found |
1 2 3 ... 54 55