succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed) 7s 3s - - 5.5 MB 101% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity;null) 4s 3s - - 6.3 MB 104% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr14_64122012-64122133;null) 4s 3s - - 6.3 MB 113% 1.5 MB 401.1 KB 0 bytes 412.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null) 4s 3s - - 6.2 MB 118% 1.6 MB 442.7 KB 0 bytes 448.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr19_47340800-47341813;null) 4s 2s - - 3.1 MB 107% 398.4 KB 84.1 KB 0 bytes 88.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_30730753-30730788;null) 3s 2s - - 6.3 MB 92% 1.4 MB 422.1 KB 0 bytes 432.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_93795409-93795507;null) 4s 3s - - 6.0 MB 96% 1.6 MB 432.2 KB 0 bytes 440.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 26s 17s 8s 1s 260.5 MB 404% 117.1 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 1m 25s 13s 1m 2s 10s 273.5 MB 131% 5.9 GB 10.5 MB 0 bytes 10.5 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 6s 4s 0s 1s 0 bytes 187% 80.0 KB 3.0 KB 0 bytes 4.0 KB 1
aborted NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_BIT) - 41s - - - - - - - - 1
aborted NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_BU7) - 41s - - - - - - - - 1
aborted NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_ELU) - 41s - - - - - - - - 1
aborted NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_WTZ) - 41s - - - - - - - - 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:ClusterPanelRegions (aih_cnv_cohort_cluster_panel_regions) 2m 44s 2s 2m 37s 4s 1.1 GB 106% 218.5 MB 15.4 MB 0 bytes 15.4 MB 1
aborted NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (869_BIT-N1-BDNA-1_B23H3TCLT3_1;chr14_64122012-64122133) - 1m 0s - - - - - - - - 1
aborted NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (869_BIT-N1-BDNA-1_B23H3TCLT3_1;chr1_69091-70008) - 57s - - - - - - - - 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (869_BIT-N1-BDNA-1_B23H3TCLT3_1;chr19_47340800-47341813) 4m 1s 3s 2m 44s 1m 14s 568.9 MB 111% 1.4 GB 801.6 KB 208.5 MB 812.0 KB 1
aborted NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (869_BIT-N1-BDNA-1_B23H3TCLT3_1;chr4_30730753-30730788) - 56s - - - - - - - - 1
aborted NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (869_BIT-N1-BDNA-1_B23H3TCLT3_1;chr8_93795409-93795507) - 55s - - - - - - - - 1
264 items found |
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