succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES (G1000_alleles_hg38.zip) 5s 4s 1s 0s 10.8 MB 101% 9.8 MB 30.0 MB 0 bytes 30.0 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC (GC_G1000_hg38.zip) 12s 3s 2s 7s 11.0 MB 100% 100.1 MB 345.6 MB 0 bytes 345.6 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI (G1000_loci_hg38.zip) 5s 3s - - 11.0 MB 98% 8.3 MB 33.1 MB 0 bytes 33.1 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT (RT_G1000_hg38.zip) 13s 3s 2s 8s 11.0 MB 101% 101.6 MB 387.4 MB 0 bytes 387.5 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed) 4s 2s - - 2.8 MB 102% 98.2 KB 49.9 KB 0 bytes 64.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21;null) 4s 2s - - 3.1 MB 89% 172.7 KB 21.4 KB 0 bytes 28.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr21_44120631-44120778;null) 5s 4s - - 3.3 MB 94% 125.1 KB 7.2 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr21_5117103-5117231;null) 4s 2s - - 3.3 MB 84% 158.0 KB 17.4 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 20s 13s 6s 1s 178.7 MB 482% 112.6 MB 84.6 KB 0 bytes 96.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 35s 4s 21s 10s 179.9 MB 184% 3.2 GB 494.0 KB 0 bytes 548.0 KB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 5s 4s 0s 0s 0 bytes 120% 109.1 KB 1.3 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_FASTQ_QC (fastq_qc_aggregation) 9s 6s 0s 2s 15.6 MB 111% 5.3 MB 8.3 KB 0 bytes 16.0 KB 1
aborted NFCORE_SAREK:SAREK:AGGREGATE_POSTDEDUP_QC (postdedup_qc_aggregation) - - - - - - - - - - 1
aborted NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (HCC1395_BL) - - - - - - - - - - 1
aborted NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (Sig_18_Blood) - - - - - - - - - - 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (HCC1395_BL;chr21_44120631-44120778) 26s 3s 11s 12s 1.2 GB 220% 195.6 MB 22.3 MB 5.4 MB 22.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (HCC1395_BL;chr21_5117103-5117231) 45s 3s 29s 13s 894.0 MB 153% 218.9 MB 80.9 MB 4.0 KB 81.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (HCC1395_tumor;chr21_44120631-44120778) 41s 3s 26s 12s 858.6 MB 159% 210.3 MB 71.1 MB 4.0 KB 71.1 MB 1
aborted NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (HCC1395_tumor;chr21_5117103-5117231) - 58s - - - - - - - - 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (Sig_18_Blood;chr21_44120631-44120778) 30s 3s 14s 13s 950.0 MB 205% 197.4 MB 27.4 MB 4.0 KB 27.5 MB 1
130 items found |
1 2 3 4 5 6 7