succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed) 33s 29s - - 5.5 MB 106% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity;null) 52s 50s - - 6.1 MB 103% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr14_64122012-64122133;null) 41s 40s - - 6.3 MB 81% 1.5 MB 401.1 KB 0 bytes 408.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null) 42s 40s - - 6.1 MB 112% 1.6 MB 442.7 KB 0 bytes 448.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr19_47340800-47341813;null) 22s 20s - - 3.3 MB 56% 396.8 KB 84.1 KB 0 bytes 88.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_30730753-30730788;null) 31s 29s - - 6.2 MB 91% 1.4 MB 422.1 KB 0 bytes 428.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_93795409-93795507;null) 54s 51s - - 6.1 MB 97% 1.6 MB 432.2 KB 0 bytes 440.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 54s 44s 8s 2s 259.3 MB 374% 117.1 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 1m 46s 38s 56s 12s 273.3 MB 138% 5.9 GB 10.5 MB 0 bytes 10.5 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 52s 50s 0s 1s 0 bytes 102% 78.5 KB 3.0 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_BIT) 19m 40s 37s 16m 21s 2m 41s 911.3 MB 226% 401.9 GB 369.0 GB 0 bytes 25.5 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_BU7) 14m 34s 36s 11m 42s 2m 15s 1.8 GB 232% 279.3 GB 253.1 GB 0 bytes 17.5 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_ELU) 13m 1s 37s 10m 30s 1m 53s 1.3 GB 231% 243.5 GB 220.7 GB 0 bytes 15.3 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_WTZ) 21m 9s 1m 4s 18m 24s 1m 40s 929.9 MB 220% 473.8 GB 431.5 GB 160.0 KB 29.9 GB 2
succeeded NFCORE_SAREK:SAREK:AIH_CNV:ClusterPanelRegions (aih_cnv_cohort_cluster_panel_regions) 2m 52s 37s 2m 10s 4s 1.1 GB 113% 218.4 MB 15.4 MB 0 bytes 15.4 MB 1
aborted NFCORE_SAREK:SAREK:AIH_CNV:ProcessBatch (aih_cnv_cohort_aih_cnv_process_batch) - 1m 0s - - - - - - - - 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (869_BIT-N1-BDNA-1_B23H3TCLT3_1) 9s 2s 6s 1s 392.6 MB 223% 97.0 MB 696.2 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (869_BU7-N1-BDNA-1_B23H3TCLT3_1) 10s 2s 6s 2s 438.8 MB 225% 97.0 MB 698.6 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (869_ELU-N1-BDNA-1_B23H3TCLT3_1) 8s 2s 6s 0s 425.6 MB 237% 97.0 MB 699.2 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (869_WTZ-N1-BDNA-1_B23H3TCLT3_1) 9s 2s 6s 1s 469.0 MB 222% 97.0 MB 699.2 KB 0 bytes 700.0 KB 1
566 items found |
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