succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES (G1000_alleles_hg38.zip) 6s 4s - - 11.0 MB 99% 9.9 MB 30.0 MB 0 bytes 30.0 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC (GC_G1000_hg38.zip) 14s 3s 2s 9s 10.8 MB 104% 100.1 MB 345.6 MB 0 bytes 345.6 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI (G1000_loci_hg38.zip) 5s 3s 1s 1s 11.1 MB 100% 8.3 MB 33.1 MB 0 bytes 33.1 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT (RT_G1000_hg38.zip) 13s 3s 2s 8s 11.0 MB 103% 101.6 MB 387.4 MB 0 bytes 387.5 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed) 5s 3s - - 3.0 MB 70% 101.6 KB 49.9 KB 0 bytes 64.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21;null) 4s 3s - - 3.2 MB 89% 173.9 KB 21.4 KB 0 bytes 28.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr21_44120631-44120778;null) 5s 3s - - 3.3 MB 81% 126.3 KB 7.2 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr21_5117103-5117231;null) 5s 3s - - 3.3 MB 86% 158.2 KB 17.4 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 29s 21s 6s 2s 179.0 MB 448% 112.6 MB 84.6 KB 0 bytes 96.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 39s 3s 25s 11s 178.1 MB 186% 3.2 GB 494.0 KB 0 bytes 512.0 KB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 4s 3s 0s 0s 0 bytes 163% 80.3 KB 2.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 23s 17s 0s 5s 17.8 MB 102% 2.5 MB 36.3 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (HCC1395_BL) 7s 3s 3s 1s 208.0 MB 282% 95.4 MB 692.0 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (Sig_18_Blood) 7s 3s 3s 1s 207.6 MB 265% 95.4 MB 692.0 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:FILTERMUTECTCALLS (HCC1395_BL) 15s 3s 3s 9s 236.6 MB 288% 145.1 MB 743.0 KB 0 bytes 756.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:FILTERMUTECTCALLS (Sig_18_Blood) 15s 3s 3s 9s 337.1 MB 288% 141.1 MB 742.7 KB 0 bytes 756.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GATHERPILEUPSUMMARIES (HCC1395_BL) 29s 24s 3s 2s 204.7 MB 258% 95.6 MB 710.6 KB 0 bytes 712.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GATHERPILEUPSUMMARIES (Sig_18_Blood) 27s 23s 3s 1s 211.3 MB 270% 95.6 MB 710.8 KB 0 bytes 712.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (HCC1395_BL;chr21_44120631-44120778) 27s 3s 9s 15s 496.7 MB 215% 132.6 MB 701.3 KB 37.0 MB 712.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (HCC1395_BL;chr21_5117103-5117231) 33s 3s 14s 16s 490.9 MB 178% 223.3 MB 706.2 KB 124.8 MB 720.0 KB 1
498 items found |
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