|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_tissue)
|
29s |
2s |
17s |
10s |
9.4 MB |
129% |
694.7 MB |
132.8 KB |
0 bytes |
132.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:GENERATE_CHIP_REPORT (HCC1395_BL)
|
3s |
2s |
0s |
0s |
16.6 MB |
4355% |
11.1 MB |
21.6 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:GENERATE_CHIP_REPORT (Sig_18_Blood)
|
3s |
1s |
0s |
1s |
18.2 MB |
4405% |
11.1 MB |
21.6 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:MULTIQC
|
43s |
18s |
14s |
10s |
1.0 GB |
209% |
84.4 MB |
25.0 MB |
0 bytes |
24.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VARIANT_QC_TO_CSV (variant_qc_csv)
|
3s |
1s |
0s |
1s |
17.9 MB |
105% |
1.7 MB |
1.3 KB |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta)
|
4s |
2s |
- |
- |
17.6 MB |
8024% |
174.8 KB |
19.4 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta)
|
3s |
2s |
- |
- |
18.0 MB |
7508% |
176.4 KB |
20.6 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;strelka)
|
5s |
3s |
- |
- |
3.2 MB |
7562% |
203.3 KB |
34.5 KB |
0 bytes |
44.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;strelka)
|
5s |
3s |
- |
- |
3.2 MB |
7986% |
190.1 KB |
26.8 KB |
0 bytes |
40.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_BL;germline_cnv)
|
4s |
3s |
1s |
0s |
17.6 MB |
7360% |
137.0 KB |
3.4 KB |
0 bytes |
16.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_BL;sentieon_haplotyper_rf)
|
3s |
1s |
- |
- |
3.2 MB |
7648% |
221.5 KB |
43.5 KB |
0 bytes |
52.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_BL;snv_indel)
|
3s |
1s |
- |
- |
3.2 MB |
7792% |
348.7 KB |
108.3 KB |
0 bytes |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;manta)
|
3s |
2s |
1s |
0s |
16.3 MB |
7665% |
175.3 KB |
19.8 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;manta)
|
3s |
1s |
- |
- |
3.1 MB |
8413% |
176.1 KB |
20.3 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;strelka)
|
3s |
1s |
- |
- |
3.1 MB |
7397% |
207.5 KB |
36.4 KB |
0 bytes |
48.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;strelka)
|
4s |
2s |
- |
- |
17.9 MB |
7358% |
185.1 KB |
23.4 KB |
0 bytes |
36.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (Sig_18_Blood;germline_cnv)
|
3s |
1s |
- |
- |
17.7 MB |
7167% |
136.8 KB |
3.4 KB |
0 bytes |
16.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (Sig_18_Blood;sentieon_haplotyper_rf)
|
4s |
2s |
- |
- |
3.3 MB |
8227% |
228.7 KB |
46.2 KB |
0 bytes |
56.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (Sig_18_Blood;snv_indel)
|
4s |
2s |
- |
- |
3.3 MB |
8294% |
378.2 KB |
123.9 KB |
0 bytes |
132.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_LOWDEPTH:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta)
|
4s |
2s |
- |
- |
3.1 MB |
6929% |
220.3 KB |
19.6 KB |
0 bytes |
32.0 KB |
1 |