succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:ENSEMBLVEP_VEP (HCC1395_tumor_vs_HCC1395_BL;snv_indel) 52s 3s 10s 39s 255.1 MB 108% 3.1 GB 1.5 MB 3.0 GB 260.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:EXTRACT_CHROMOSOMES (custom_Sig_18_tumor_normal) 5s 4s 0s 0s 3.6 MB 892% 109.6 KB 655 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:EXTRACT_CHROMOSOMES (HCC1395_tumor_vs_HCC1395_BL) 21s 19s 0s 1s 3.7 MB 480% 109.1 KB 653 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:HARD_FILTER_VCF (custom_Sig_18_tumor_normal) 5s 2s 0s 2s 12.1 MB 101% 8.5 MB 833.1 KB 0 bytes 844.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:HARD_FILTER_VCF (HCC1395_tumor_vs_HCC1395_BL) 5s 2s 0s 2s 12.5 MB 100% 8.4 MB 651.2 KB 0 bytes 660.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:LABEL_HOTSPOTS (custom_Sig_18_tumor_normal) 8s 6s 0s 1s 12.3 MB 94% 2.0 MB 818.3 KB 0 bytes 828.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:LABEL_HOTSPOTS (HCC1395_tumor_vs_HCC1395_BL) 8s 7s 0s 0s 14.1 MB 104% 1.8 MB 638.7 KB 0 bytes 648.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:PREP_STRELKA_INDEL (custom_Sig_18_tumor_normal) 22s 4s 8s 9s 31.6 MB 169% 3.0 GB 599.1 KB 0 bytes 228.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:PREP_STRELKA_INDEL (HCC1395_tumor_vs_HCC1395_BL) 22s 4s 8s 9s 50.5 MB 281% 3.0 GB 564.1 KB 0 bytes 220.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:PREP_TNSEQ_SNV (custom_Sig_18_tumor_normal) 54s 37s 8s 8s 85.8 MB 377% 3.0 GB 1.2 MB 0 bytes 244.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:PREP_TNSEQ_SNV (HCC1395_tumor_vs_HCC1395_BL) 26s 7s 9s 9s 86.0 MB 376% 3.0 GB 1.1 MB 0 bytes 244.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:TABIX_VEP (custom_Sig_18_tumor_normal;snv_indel) 8s 5s - - 3.1 MB 54% 183.0 KB 4.8 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:TABIX_VEP (HCC1395_tumor_vs_HCC1395_BL;snv_indel) 6s 4s - - 3.2 MB 109% 168.5 KB 4.5 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:TMB_SNV_INDEL (custom_Sig_18_tumor_normal) 12s 10s 0s 1s 12.6 MB 102% 2.1 MB 833.6 KB 0 bytes 856.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:TMB_SNV_INDEL (HCC1395_tumor_vs_HCC1395_BL) 10s 8s 0s 1s 12.6 MB 96% 1.9 MB 651.9 KB 0 bytes 672.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:WHATSHAP (custom_Sig_18_tumor_normal:chr21) 1m 32s 2s 1m 21s 9s 302.8 MB 100% 776.1 MB 407.3 KB 0 bytes 416.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:WHATSHAP (HCC1395_tumor_vs_HCC1395_BL:chr21) 43s 1s 34s 8s 157.5 MB 100% 414.9 MB 370.9 KB 0 bytes 376.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_TMB:TMB (custom_Sig_18_tumor_normal) 15s 13s 0s 1s 13.0 MB 97% 1.7 MB 822 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_TMB:TMB (HCC1395_tumor_vs_HCC1395_BL) 9s 8s 0s 0s 13.0 MB 99% 1.7 MB 728 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_TMB:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (custom_Sig_18_tumor_normal;tnseq) 1m 46s 1m 22s 21s 3s 5.9 GB 566% 170.9 MB 3.6 MB 0 bytes 756.0 KB 1
304 items found |
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