succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_Blood) 52s 36s 4s 11s 447.2 MB 294% 157.7 MB 1.5 MB 0 bytes 1.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_tissue) 55s 37s 7s 10s 741.2 MB 231% 260.1 MB 4.5 MB 17.9 MB 4.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_BL;SNP_GRCh38_hg38_wChr) 29s 4s 14s 11s 421.9 MB 278% 4.1 GB 832.8 KB 0 bytes 208.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_tumor;SNP_GRCh38_hg38_wChr) 37s 10s 18s 9s 494.4 MB 308% 4.5 GB 847.2 KB 0 bytes 216.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (Sig_18_Blood;SNP_GRCh38_hg38_wChr) 27s 4s 13s 10s 331.9 MB 330% 3.9 GB 830.3 KB 604.7 MB 212.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (Sig_18_tissue;SNP_GRCh38_hg38_wChr) 33s 5s 19s 9s 496.4 MB 228% 4.8 GB 851.1 KB 71.0 MB 216.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:NGSCHECKMATE_NCM (1) 24s 13s 1s 10s 3.3 MB 1043% 12.1 MB 859.2 KB 0 bytes 900.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL) 44s 4s 31s 9s 1.9 GB 107% 167.0 MB 6.1 MB 154.2 MB 6.2 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_tumor) 41s 4s 26s 11s 1.9 GB 117% 333.6 MB 9.7 MB 317.8 MB 9.7 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_Blood) 42s 5s 25s 12s 1.9 GB 111% 213.5 MB 7.4 MB 187.6 MB 7.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_tissue) 42s 4s 28s 10s 2.8 GB 129% 721.2 MB 14.8 MB 694.5 MB 14.8 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_BL) 22s 5s 4s 13s 9.0 MB 131% 155.6 MB 125.8 KB 0 bytes 128.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_tumor) 22s 3s 9s 10s 8.9 MB 128% 318.0 MB 131.5 KB 237.9 MB 132.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_Blood) 21s 4s 5s 12s 9.0 MB 136% 199.3 MB 128.0 KB 0 bytes 128.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_tissue) 33s 4s 19s 10s 9.3 MB 126% 694.7 MB 132.8 KB 0 bytes 132.0 KB 1
succeeded NFCORE_SAREK:SAREK:GENERATE_CHIP_REPORT (HCC1395_BL) 5s 3s 0s 1s 13.5 MB 1993% 11.1 MB 21.6 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:GENERATE_CHIP_REPORT (Sig_18_Blood) 4s 2s 0s 1s 14.4 MB 2118% 11.1 MB 21.6 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:MULTIQC 1m 19s 37s 30s 11s 1.0 GB 46% 83.4 MB 24.2 MB 0 bytes 23.9 MB 1
succeeded NFCORE_SAREK:SAREK:VARIANT_QC_TO_CSV (variant_qc_csv) 15s 14s 0s 0s 18.0 MB 97% 1.7 MB 1.3 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta) 5s 3s - - 3.2 MB 3500% 174.3 KB 20.6 KB 0 bytes 32.0 KB 1
304 items found |
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