succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:ENSEMBLVEP_VEP (HCC1395_tumor_vs_HCC1395_BL;snv_indel) 41s 17s 9s 15s 365.1 MB 109% 3.1 GB 1.5 MB 2.4 GB 256.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:EXTRACT_CHROMOSOMES (custom_Sig_18_tumor_normal) 4s 2s 0s 1s 3.5 MB 1477% 111.0 KB 659 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:EXTRACT_CHROMOSOMES (HCC1395_tumor_vs_HCC1395_BL) 4s 3s 0s 0s 3.6 MB 1217% 110.8 KB 659 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:HARD_FILTER_VCF (custom_Sig_18_tumor_normal) 4s 2s 0s 1s 14.2 MB 100% 8.6 MB 830.9 KB 0 bytes 840.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:HARD_FILTER_VCF (HCC1395_tumor_vs_HCC1395_BL) 4s 2s 0s 1s 13.1 MB 98% 8.4 MB 650.2 KB 0 bytes 660.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:LABEL_HOTSPOTS (custom_Sig_18_tumor_normal) 6s 5s 0s 0s 17.2 MB 94% 2.0 MB 816.2 KB 0 bytes 828.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:LABEL_HOTSPOTS (HCC1395_tumor_vs_HCC1395_BL) 7s 5s 0s 1s 11.9 MB 107% 1.8 MB 637.5 KB 0 bytes 648.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:PREP_STRELKA_INDEL (custom_Sig_18_tumor_normal) 23s 7s 7s 8s 36.3 MB 182% 3.0 GB 596.5 KB 0 bytes 228.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:PREP_STRELKA_INDEL (HCC1395_tumor_vs_HCC1395_BL) 19s 3s 7s 8s 59.9 MB 389% 3.0 GB 562.7 KB 0 bytes 220.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:PREP_TNSEQ_SNV (custom_Sig_18_tumor_normal) 19s 3s 7s 8s 85.8 MB 467% 3.0 GB 1.2 MB 0 bytes 244.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:PREP_TNSEQ_SNV (HCC1395_tumor_vs_HCC1395_BL) 20s 3s 7s 9s 85.6 MB 435% 3.0 GB 1.1 MB 0 bytes 244.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:TABIX_VEP (custom_Sig_18_tumor_normal;snv_indel) 5s 3s - - 3.3 MB 178% 181.1 KB 4.9 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:TABIX_VEP (HCC1395_tumor_vs_HCC1395_BL;snv_indel) 4s 3s - - 3.3 MB 100% 162.2 KB 4.4 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:TMB_SNV_INDEL (custom_Sig_18_tumor_normal) 6s 5s 0s 0s 12.5 MB 112% 2.1 MB 831.4 KB 0 bytes 852.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:TMB_SNV_INDEL (HCC1395_tumor_vs_HCC1395_BL) 3s 2s 0s 0s 15.0 MB 103% 1.9 MB 650.7 KB 0 bytes 672.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:WHATSHAP (custom_Sig_18_tumor_normal:chr21) 1m 14s 2s 1m 3s 9s 277.8 MB 100% 776.1 MB 404.5 KB 0 bytes 412.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:WHATSHAP (HCC1395_tumor_vs_HCC1395_BL:chr21) 36s 2s 25s 9s 154.0 MB 100% 414.9 MB 369.4 KB 0 bytes 376.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_TMB:TMB (custom_Sig_18_tumor_normal) 3s 1s 0s 1s 13.3 MB 95% 1.7 MB 842 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_TMB:TMB (HCC1395_tumor_vs_HCC1395_BL) 3s 2s 0s 0s 14.3 MB 80% 1.7 MB 749 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_TMB:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (custom_Sig_18_tumor_normal;tnseq) 36s 8s 25s 3s 3.8 GB 211% 170.9 MB 3.6 MB 0 bytes 756.0 KB 1
304 items found |
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